Wall clock time and date at job start Fri Apr 10 2020 18:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99579 * 2 1 4 4 C 1.52992 * 112.85423 * 299.28326 * 3 2 1 5 5 C 1.50697 * 109.47356 * 295.27992 * 4 3 2 6 6 O 1.21283 * 120.00142 * 4.96572 * 5 4 3 7 7 N 1.34775 * 120.00313 * 184.97239 * 5 4 3 8 8 C 1.46968 * 120.59450 * 359.71168 * 7 5 4 9 9 C 1.53367 * 108.63298 * 125.05288 * 8 7 5 10 10 N 1.46965 * 108.63693 * 49.42537 * 9 8 7 11 11 C 1.34781 * 120.59117 * 124.74957 * 10 9 8 12 12 O 1.21684 * 120.00157 * 354.81277 * 11 10 9 13 13 C 1.46372 * 119.99699 * 174.81078 * 11 10 9 14 14 H 1.08003 * 120.00217 * 5.05275 * 13 11 10 15 15 C 1.40045 * 119.99867 * 185.06183 * 13 11 10 16 16 N 1.30673 * 120.00028 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99991 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47269 * 89.99606 * 17 15 13 19 19 H 1.48503 * 109.46688 * 209.99792 * 17 15 13 20 20 H 1.48497 * 109.46763 * 329.99120 * 17 15 13 21 21 C 1.46958 * 118.81149 * 304.77670 * 10 9 8 22 22 C 1.46963 * 120.59357 * 180.02562 * 7 5 4 23 23 C 1.53782 * 113.61187 * 70.48461 * 3 2 1 24 24 C 1.53952 * 87.02277 * 89.22630 * 23 3 2 25 25 C 1.53783 * 113.61011 * 168.08833 * 3 2 1 26 26 H 1.08999 * 109.46463 * 185.29229 * 1 2 3 27 27 H 1.09000 * 109.46736 * 305.28478 * 1 2 3 28 28 H 1.08996 * 109.47209 * 65.28421 * 1 2 3 29 29 H 1.08998 * 109.47779 * 175.27132 * 4 3 2 30 30 H 1.09007 * 109.46895 * 55.27294 * 4 3 2 31 31 H 1.08996 * 109.61052 * 244.80197 * 8 7 5 32 32 H 1.09003 * 109.60563 * 5.31118 * 8 7 5 33 33 H 1.09011 * 109.60954 * 289.68210 * 9 8 7 34 34 H 1.09000 * 109.61047 * 169.17431 * 9 8 7 35 35 H 0.97001 * 120.00098 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.61095 * 295.47567 * 21 10 9 37 37 H 1.09004 * 109.61157 * 174.97269 * 21 10 9 38 38 H 1.09001 * 109.61305 * 354.68770 * 22 7 5 39 39 H 1.09003 * 109.61362 * 115.20612 * 22 7 5 40 40 H 1.09002 * 113.61042 * 203.74229 * 23 3 2 41 41 H 1.08999 * 113.61604 * 334.64601 * 23 3 2 42 42 H 1.08998 * 113.53762 * 270.81262 * 24 23 3 43 43 H 1.09003 * 113.74677 * 139.93575 * 24 23 3 44 44 H 1.08997 * 113.61669 * 25.35269 * 25 3 2 45 45 H 1.09000 * 113.61308 * 156.16964 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6218 2.1288 -1.2297 5 6 2.1854 1.4796 -2.4674 6 8 2.7562 0.4125 -2.3861 7 7 2.0551 2.0846 -3.6646 8 6 1.3605 3.3747 -3.7791 9 6 2.2979 4.3768 -4.4641 10 7 2.8425 3.7554 -5.6795 11 6 2.7070 4.3576 -6.8776 12 8 2.0491 5.3766 -6.9755 13 6 3.3513 3.7859 -8.0610 14 1 3.8665 2.8392 -7.9912 15 6 3.2997 4.4665 -9.2839 16 7 2.6761 5.6117 -9.3685 17 14 4.1213 3.7365 -10.7945 18 1 3.1522 2.8741 -11.5170 19 1 4.5731 4.8316 -11.6900 20 1 5.2920 2.9238 -10.3770 21 6 3.5370 2.4653 -5.5650 22 6 2.5992 1.4628 -4.8800 23 6 1.8306 2.0597 1.3281 24 6 3.1535 1.4149 1.7805 25 6 3.5203 1.3075 0.2908 26 1 -0.3632 -1.0233 0.0948 27 1 -0.3633 0.5936 0.8389 28 1 -0.3633 0.4297 -0.9335 29 1 2.0236 3.1375 -1.1334 30 1 0.5355 2.1763 -1.3069 31 1 0.4569 3.2519 -4.3760 32 1 1.0989 3.7387 -2.7855 33 1 3.1134 4.6357 -3.7887 34 1 1.7412 5.2753 -4.7306 35 1 2.6407 6.0833 -10.2154 36 1 4.4407 2.5880 -4.9680 37 1 3.7987 2.1013 -6.5586 38 1 3.1557 0.5642 -4.6136 39 1 1.7836 1.2043 -5.5553 40 1 1.8858 3.1435 1.2257 41 1 0.9648 1.7314 1.9031 42 1 3.0225 0.4492 2.2686 43 1 3.8007 2.0887 2.3419 44 1 4.0165 0.3729 0.0296 45 1 4.0384 2.1846 -0.0969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332475460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:26 Heat of formation + Delta-G solvation = -76.586804 kcal Electronic energy + Delta-G solvation = -26822.819353 eV Core-core repulsion = 23034.922758 eV Total energy + Delta-G solvation = -3787.896595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65920 -39.29205 -37.76737 -35.76823 -35.70001 -33.13464 -32.60056 -31.28835 -30.16600 -27.39618 -27.12632 -25.98078 -25.66292 -23.74424 -22.97285 -21.81351 -19.99607 -19.52597 -18.45019 -17.19825 -16.57153 -16.23107 -16.07671 -15.69566 -15.26635 -15.23464 -14.94804 -14.56539 -14.31792 -14.28647 -14.07733 -13.86744 -13.45972 -13.06752 -12.64324 -12.54122 -12.22111 -12.01494 -11.78092 -11.68186 -11.57446 -11.40931 -11.18969 -11.13687 -11.01268 -10.98215 -10.91422 -10.70230 -10.29672 -10.27501 -10.14115 -9.67226 -9.37517 -8.94265 -8.59611 -7.68920 -7.27817 -6.27689 -4.73010 2.81337 3.09838 3.10677 3.17571 3.20319 3.56613 4.02527 4.21008 4.40765 4.43260 4.48642 4.53163 4.66164 4.79351 5.06351 5.12354 5.17497 5.20219 5.31364 5.33677 5.35623 5.49821 5.51897 5.53293 5.55236 5.58277 5.63949 5.69227 5.90454 5.95868 6.03584 6.04149 6.08026 6.11635 6.28996 6.31410 6.50458 6.75464 7.16024 7.38363 7.46673 7.61274 8.03149 8.24619 8.38251 8.94652 9.31133 10.47950 10.66558 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.030498 B = 0.003000 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.881033 B = 9329.609246 C = 9568.767838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.112 3.888 4 C -0.160 4.160 5 C 0.514 3.486 6 O -0.530 6.530 7 N -0.609 5.609 8 C 0.093 3.907 9 C 0.106 3.894 10 N -0.642 5.642 11 C 0.559 3.441 12 O -0.577 6.577 13 C -0.544 4.544 14 H 0.074 0.926 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.111 3.889 22 C 0.096 3.904 23 C -0.165 4.165 24 C -0.136 4.136 25 C -0.116 4.116 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.269 0.731 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 -6.970 18.330 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.263 6.263 3 C 0.071 3.929 4 C -0.200 4.200 5 C 0.301 3.699 6 O -0.406 6.406 7 N -0.343 5.343 8 C -0.031 4.031 9 C -0.019 4.019 10 N -0.381 5.381 11 C 0.366 3.634 12 O -0.460 6.460 13 C -0.581 4.581 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.015 4.015 22 C -0.027 4.027 23 C -0.203 4.203 24 C -0.173 4.173 25 C -0.154 4.154 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.464 -6.969 18.176 19.622 hybrid contribution 0.016 -0.034 -0.824 0.825 sum -2.447 -7.003 17.352 18.871 Atomic orbital electron populations 1.22731 0.81900 1.02559 0.99783 1.88030 1.18812 1.24996 1.94441 1.22212 0.95758 0.83655 0.91282 1.22254 1.02849 1.01043 0.93850 1.20376 0.80049 0.85348 0.84093 1.90698 1.42652 1.21521 1.85718 1.48134 1.56841 1.22018 1.07328 1.22237 0.96101 0.83677 1.01073 1.21486 0.96220 0.96397 0.87766 1.48175 1.61040 1.22015 1.06888 1.18280 0.80534 0.83519 0.81111 1.90589 1.44333 1.26769 1.84263 1.20966 1.36690 1.07644 0.92755 0.90846 1.25728 0.93672 0.94080 0.99732 1.70006 1.31877 1.11983 1.25688 0.86376 0.80053 0.79275 0.81143 1.19664 1.20422 1.18794 1.21814 0.93381 0.84580 1.01686 1.22121 0.98261 0.97005 0.85301 1.23610 0.99006 1.00387 0.97255 1.22807 0.96698 1.01102 0.96726 1.22899 0.93722 1.03512 0.95219 0.89688 0.94068 0.94240 0.87964 0.88875 0.91072 0.90039 0.93557 0.88575 0.92005 0.93508 0.87762 0.88894 0.91395 0.89174 0.90981 0.89894 0.91311 0.89862 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.47 101.05 1.06 1.32 16 2 O -0.34 -4.47 9.83 -49.35 -0.49 -4.95 16 3 C 0.11 1.23 0.38 -89.81 -0.03 1.20 16 4 C -0.16 -1.75 3.31 -27.89 -0.09 -1.84 16 5 C 0.51 7.61 7.45 -10.99 -0.08 7.53 16 6 O -0.53 -9.48 14.35 -8.56 -0.12 -9.60 16 7 N -0.61 -9.29 2.95 -172.46 -0.51 -9.79 16 8 C 0.09 1.33 6.50 -3.60 -0.02 1.31 16 9 C 0.11 1.91 6.60 -3.60 -0.02 1.89 16 10 N -0.64 -13.95 2.95 -174.12 -0.51 -14.47 16 11 C 0.56 15.29 7.62 -12.99 -0.10 15.19 16 12 O -0.58 -17.92 14.45 5.20 0.08 -17.85 16 13 C -0.54 -14.74 8.86 -35.63 -0.32 -15.06 16 14 H 0.07 1.81 5.67 -52.48 -0.30 1.51 16 15 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 16 N -0.77 -22.36 11.84 55.55 0.66 -21.71 16 17 Si 0.91 19.58 29.56 -169.99 -5.02 14.56 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 C 0.11 2.03 6.48 -3.58 -0.02 2.01 16 22 C 0.10 1.58 6.60 -3.57 -0.02 1.56 16 23 C -0.16 -1.38 7.21 -25.83 -0.19 -1.57 16 24 C -0.14 -1.20 8.02 -25.83 -0.21 -1.41 16 25 C -0.12 -1.29 6.55 -25.91 -0.17 -1.45 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.32 6.87 -51.93 -0.36 -0.04 16 28 H 0.04 0.38 6.89 -51.93 -0.36 0.03 16 29 H 0.10 0.93 7.41 -51.93 -0.38 0.55 16 30 H 0.09 0.89 6.73 -51.93 -0.35 0.54 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.87 5.89 -51.93 -0.31 0.56 16 33 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 34 H 0.10 1.90 6.99 -51.93 -0.36 1.54 16 35 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.98 5.34 -51.93 -0.28 1.70 16 38 H 0.09 1.49 6.99 -51.93 -0.36 1.13 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 41 H 0.07 0.56 7.02 -51.93 -0.36 0.20 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -35.09 354.18 -7.68 -42.76 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.77 Total: 2.75 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -0.32 Total: 12.95 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.36 Total: -45.97 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.53 Total: -32.40 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.09 -7.68 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332475460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.824 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds