Wall clock time and date at job start Fri Apr 10 2020 18:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99579 * 2 1 4 4 C 1.52992 * 112.85423 * 299.28326 * 3 2 1 5 5 C 1.50697 * 109.47356 * 295.27992 * 4 3 2 6 6 O 1.21283 * 120.00142 * 4.96572 * 5 4 3 7 7 N 1.34775 * 120.00313 * 184.97239 * 5 4 3 8 8 C 1.46968 * 120.59450 * 359.71168 * 7 5 4 9 9 C 1.53367 * 108.63298 * 125.05288 * 8 7 5 10 10 N 1.46965 * 108.63693 * 49.42537 * 9 8 7 11 11 C 1.34781 * 120.59117 * 124.74957 * 10 9 8 12 12 O 1.21684 * 120.00157 * 354.81277 * 11 10 9 13 13 C 1.46372 * 119.99699 * 174.81078 * 11 10 9 14 14 H 1.08003 * 120.00217 * 5.05275 * 13 11 10 15 15 C 1.40045 * 119.99867 * 185.06183 * 13 11 10 16 16 N 1.30673 * 120.00028 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99991 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47269 * 89.99606 * 17 15 13 19 19 H 1.48503 * 109.46688 * 209.99792 * 17 15 13 20 20 H 1.48497 * 109.46763 * 329.99120 * 17 15 13 21 21 C 1.46958 * 118.81149 * 304.77670 * 10 9 8 22 22 C 1.46963 * 120.59357 * 180.02562 * 7 5 4 23 23 C 1.53782 * 113.61187 * 70.48461 * 3 2 1 24 24 C 1.53952 * 87.02277 * 89.22630 * 23 3 2 25 25 C 1.53783 * 113.61011 * 168.08833 * 3 2 1 26 26 H 1.08999 * 109.46463 * 185.29229 * 1 2 3 27 27 H 1.09000 * 109.46736 * 305.28478 * 1 2 3 28 28 H 1.08996 * 109.47209 * 65.28421 * 1 2 3 29 29 H 1.08998 * 109.47779 * 175.27132 * 4 3 2 30 30 H 1.09007 * 109.46895 * 55.27294 * 4 3 2 31 31 H 1.08996 * 109.61052 * 244.80197 * 8 7 5 32 32 H 1.09003 * 109.60563 * 5.31118 * 8 7 5 33 33 H 1.09011 * 109.60954 * 289.68210 * 9 8 7 34 34 H 1.09000 * 109.61047 * 169.17431 * 9 8 7 35 35 H 0.97001 * 120.00098 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.61095 * 295.47567 * 21 10 9 37 37 H 1.09004 * 109.61157 * 174.97269 * 21 10 9 38 38 H 1.09001 * 109.61305 * 354.68770 * 22 7 5 39 39 H 1.09003 * 109.61362 * 115.20612 * 22 7 5 40 40 H 1.09002 * 113.61042 * 203.74229 * 23 3 2 41 41 H 1.08999 * 113.61604 * 334.64601 * 23 3 2 42 42 H 1.08998 * 113.53762 * 270.81262 * 24 23 3 43 43 H 1.09003 * 113.74677 * 139.93575 * 24 23 3 44 44 H 1.08997 * 113.61669 * 25.35269 * 25 3 2 45 45 H 1.09000 * 113.61308 * 156.16964 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6218 2.1288 -1.2297 5 6 2.1854 1.4796 -2.4674 6 8 2.7562 0.4125 -2.3861 7 7 2.0551 2.0846 -3.6646 8 6 1.3605 3.3747 -3.7791 9 6 2.2979 4.3768 -4.4641 10 7 2.8425 3.7554 -5.6795 11 6 2.7070 4.3576 -6.8776 12 8 2.0491 5.3766 -6.9755 13 6 3.3513 3.7859 -8.0610 14 1 3.8665 2.8392 -7.9912 15 6 3.2997 4.4665 -9.2839 16 7 2.6761 5.6117 -9.3685 17 14 4.1213 3.7365 -10.7945 18 1 3.1522 2.8741 -11.5170 19 1 4.5731 4.8316 -11.6900 20 1 5.2920 2.9238 -10.3770 21 6 3.5370 2.4653 -5.5650 22 6 2.5992 1.4628 -4.8800 23 6 1.8306 2.0597 1.3281 24 6 3.1535 1.4149 1.7805 25 6 3.5203 1.3075 0.2908 26 1 -0.3632 -1.0233 0.0948 27 1 -0.3633 0.5936 0.8389 28 1 -0.3633 0.4297 -0.9335 29 1 2.0236 3.1375 -1.1334 30 1 0.5355 2.1763 -1.3069 31 1 0.4569 3.2519 -4.3760 32 1 1.0989 3.7387 -2.7855 33 1 3.1134 4.6357 -3.7887 34 1 1.7412 5.2753 -4.7306 35 1 2.6407 6.0833 -10.2154 36 1 4.4407 2.5880 -4.9680 37 1 3.7987 2.1013 -6.5586 38 1 3.1557 0.5642 -4.6136 39 1 1.7836 1.2043 -5.5553 40 1 1.8858 3.1435 1.2257 41 1 0.9648 1.7314 1.9031 42 1 3.0225 0.4492 2.2686 43 1 3.8007 2.0887 2.3419 44 1 4.0165 0.3729 0.0296 45 1 4.0384 2.1846 -0.0969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332475460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:25 Heat of formation + Delta-G solvation = -100.379300 kcal Electronic energy + Delta-G solvation = -26823.851073 eV Core-core repulsion = 23034.922758 eV Total energy + Delta-G solvation = -3788.928315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.66340 -40.48647 -39.36560 -37.41725 -36.49128 -34.81354 -34.56109 -32.63488 -31.26887 -29.00624 -27.94429 -27.68765 -26.40536 -24.92352 -24.24795 -23.16478 -21.52748 -20.37433 -19.85587 -18.61423 -18.00681 -17.50359 -17.37237 -16.99608 -16.47176 -16.27073 -16.12032 -15.95328 -15.91070 -15.64985 -15.06358 -14.91328 -14.68373 -14.40271 -14.23370 -13.62390 -13.48237 -13.27294 -13.15545 -13.05243 -12.84660 -12.74514 -12.57810 -12.34455 -12.26906 -12.20588 -12.00444 -11.99989 -11.86912 -11.66472 -11.07768 -10.94275 -10.73426 -10.28810 -10.02084 -9.79853 -8.99239 -8.30489 -6.84830 1.40600 1.40764 1.55956 1.67161 1.91206 2.23965 2.45030 2.77778 2.84514 3.35469 3.57676 3.67560 3.70145 3.81020 3.95355 3.96229 4.07459 4.21796 4.28935 4.35507 4.42547 4.44631 4.49046 4.51724 4.59993 4.64668 4.71255 4.76022 4.80807 4.86108 4.88568 4.90740 5.05243 5.08024 5.18282 5.29503 5.35701 5.42048 5.47322 5.70724 6.10423 6.32222 6.40597 6.46947 6.87647 7.21327 7.36108 8.44236 8.65372 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.030498 B = 0.003000 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.881033 B = 9329.609246 C = 9568.767838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.377 6.377 3 C 0.100 3.900 4 C -0.156 4.156 5 C 0.513 3.487 6 O -0.563 6.563 7 N -0.612 5.612 8 C 0.106 3.894 9 C 0.102 3.898 10 N -0.645 5.645 11 C 0.544 3.456 12 O -0.627 6.627 13 C -0.570 4.570 14 H 0.092 0.908 15 C 0.032 3.968 16 N -0.820 5.820 17 Si 0.992 3.008 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.249 1.249 21 C 0.113 3.887 22 C 0.105 3.895 23 C -0.149 4.149 24 C -0.131 4.131 25 C -0.127 4.127 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.274 0.726 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 -7.400 19.793 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.296 6.296 3 C 0.060 3.940 4 C -0.196 4.196 5 C 0.302 3.698 6 O -0.442 6.442 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.022 4.022 10 N -0.382 5.382 11 C 0.350 3.650 12 O -0.514 6.514 13 C -0.606 4.606 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.450 5.450 17 Si 0.811 3.189 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.172 1.172 21 C -0.011 4.011 22 C -0.019 4.019 23 C -0.186 4.186 24 C -0.168 4.168 25 C -0.164 4.164 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.454 -7.434 19.703 21.202 hybrid contribution 0.033 0.055 -1.189 1.191 sum -2.421 -7.379 18.514 20.077 Atomic orbital electron populations 1.22871 0.80531 1.03426 1.00534 1.87991 1.20494 1.26443 1.94684 1.22400 0.95440 0.83512 0.92631 1.22360 1.03964 1.01811 0.91450 1.21096 0.79116 0.84868 0.84681 1.90693 1.44130 1.23198 1.86158 1.48208 1.56907 1.22264 1.07193 1.22178 0.94316 0.82242 1.03020 1.21690 0.97287 0.96549 0.86715 1.48006 1.60740 1.22766 1.06709 1.18585 0.80172 0.83205 0.82999 1.90541 1.46331 1.28859 1.85643 1.21502 1.37013 1.08617 0.93506 0.88981 1.26918 0.93844 0.94164 1.03437 1.70167 1.33822 1.13980 1.27012 0.85100 0.79187 0.78479 0.76100 1.18747 1.19892 1.17212 1.21866 0.93981 0.83513 1.01726 1.21896 0.97680 0.96472 0.85857 1.23570 0.98792 1.01237 0.95043 1.22772 0.97464 1.01288 0.95288 1.22970 0.94024 1.02186 0.97222 0.89261 0.91865 0.94500 0.85308 0.86828 0.91943 0.85347 0.91692 0.90831 0.91589 0.92500 0.88670 0.88513 0.92007 0.86982 0.90067 0.90689 0.89653 0.93020 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.47 113.37 1.19 1.57 16 2 O -0.38 -9.24 9.83 -135.48 -1.33 -10.57 16 3 C 0.10 1.97 0.38 -10.27 0.00 1.97 16 4 C -0.16 -2.87 3.31 29.84 0.10 -2.78 16 5 C 0.51 14.15 7.45 87.66 0.65 14.80 16 6 O -0.56 -19.74 14.35 10.46 0.15 -19.59 16 7 N -0.61 -17.54 2.95 -817.93 -2.41 -19.95 16 8 C 0.11 2.79 6.50 86.41 0.56 3.35 16 9 C 0.10 3.57 6.60 86.41 0.57 4.14 16 10 N -0.65 -28.18 2.95 -823.02 -2.43 -30.61 16 11 C 0.54 30.58 7.62 86.36 0.66 31.23 16 12 O -0.63 -40.52 14.45 -4.30 -0.06 -40.58 16 13 C -0.57 -31.36 8.86 24.83 0.22 -31.14 16 14 H 0.09 4.54 5.67 -2.91 -0.02 4.52 16 15 C 0.03 1.73 5.50 85.30 0.47 2.20 16 16 N -0.82 -49.21 11.84 21.83 0.26 -48.95 16 17 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 21 C 0.11 4.13 6.48 86.43 0.56 4.69 16 22 C 0.10 3.36 6.60 86.43 0.57 3.93 16 23 C -0.15 -1.94 7.21 31.18 0.22 -1.72 16 24 C -0.13 -2.01 8.02 31.18 0.25 -1.76 16 25 C -0.13 -2.63 6.55 31.12 0.20 -2.42 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 0.78 6.87 -2.39 -0.02 0.77 16 28 H 0.04 0.64 6.89 -2.39 -0.02 0.62 16 29 H 0.13 1.71 7.41 -2.39 -0.02 1.69 16 30 H 0.11 1.67 6.73 -2.38 -0.02 1.66 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.13 2.20 5.89 -2.39 -0.01 2.18 16 33 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.07 2.95 6.99 -2.39 -0.02 2.93 16 35 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 3.61 5.34 -2.38 -0.01 3.60 16 38 H 0.10 3.06 6.99 -2.39 -0.02 3.04 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 1.00 8.06 -2.39 -0.02 0.98 16 41 H 0.08 0.94 7.02 -2.39 -0.02 0.93 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -80.03 354.18 3.43 -76.60 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.00 Total: 23.32 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.22 Total: 28.08 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -4.58 Total: -99.51 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -1.24 Total: -70.73 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -80.03 3.43 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332475460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.777 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds