Wall clock time and date at job start Fri Apr 10 2020 18:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46904 * 2 1 4 4 C 1.42899 * 113.99841 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47078 * 29.99808 * 4 3 2 6 6 C 1.52992 * 109.47135 * 149.99697 * 4 3 2 7 7 C 1.50700 * 109.47257 * 294.99778 * 6 4 3 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 4 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99635 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47011 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99914 * 180.02562 * 11 10 9 14 14 C 1.37104 * 119.99647 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00062 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47017 * 60.00263 * 18 16 14 20 20 H 1.48498 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47114 * 300.00455 * 18 16 14 22 22 C 1.50699 * 109.46930 * 269.99779 * 4 3 2 23 23 C 1.30527 * 124.44757 * 125.02282 * 22 4 3 24 24 C 1.51103 * 111.10476 * 179.97438 * 23 22 4 25 25 C 1.54641 * 104.72301 * 16.44423 * 24 23 22 26 26 C 1.51104 * 124.44954 * 304.72347 * 22 4 3 27 27 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47428 * 300.00506 * 1 2 3 29 29 H 1.08997 * 109.46944 * 60.00553 * 1 2 3 30 30 H 1.08995 * 109.47051 * 239.99626 * 2 1 3 31 31 H 1.09005 * 109.46691 * 119.99637 * 2 1 3 32 32 H 1.09004 * 109.47330 * 174.99800 * 6 4 3 33 33 H 1.08997 * 109.47279 * 55.00287 * 6 4 3 34 34 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 35 35 H 1.09005 * 109.47306 * 299.99972 * 10 9 7 36 36 H 1.09002 * 109.47518 * 60.00210 * 10 9 7 37 37 H 0.97000 * 120.00556 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99972 * 179.97438 * 17 16 14 39 39 H 1.08001 * 124.44792 * 0.02562 * 23 22 4 40 40 H 1.09004 * 110.38717 * 135.24500 * 24 23 22 41 41 H 1.08995 * 110.39197 * 257.62810 * 24 23 22 42 42 H 1.08999 * 111.04215 * 93.39554 * 25 24 23 43 43 H 1.09003 * 111.03301 * 217.29285 * 25 24 23 44 44 H 1.09003 * 110.38154 * 282.39858 * 26 22 4 45 45 H 1.08997 * 110.38356 * 44.77177 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8403 2.7458 -0.7218 7 6 3.4471 2.6543 -2.1738 8 8 2.8934 1.6590 -2.5905 9 7 3.7107 3.6786 -3.0092 10 6 3.3280 3.5898 -4.4205 11 6 3.7325 4.8556 -5.1313 12 8 4.2865 5.7443 -4.5192 13 7 3.4787 5.0002 -6.4470 14 6 3.8463 6.1520 -7.0934 15 1 4.3388 6.9436 -6.5483 16 6 3.5851 6.3009 -8.4501 17 7 2.9853 5.3379 -9.1133 18 14 4.0853 7.8705 -9.3307 19 1 5.5558 8.0493 -9.2268 20 1 3.6969 7.7807 -10.7612 21 1 3.4002 9.0295 -8.7041 22 6 3.9322 1.4996 1.4200 23 6 4.8279 0.6863 1.9098 24 6 5.1068 0.9950 3.3624 25 6 3.9197 1.8786 3.8114 26 6 3.4686 2.4901 2.4628 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.9196 2.8774 -0.6454 33 1 3.3372 3.5963 -0.2620 34 1 4.1500 4.4762 -2.6751 35 1 3.8304 2.7388 -4.8804 36 1 2.2485 3.4590 -4.4967 37 1 3.0360 4.2894 -6.9365 38 1 2.8027 5.4421 -10.0602 39 1 5.3074 -0.1031 1.3500 40 1 5.1379 0.0754 3.9469 41 1 6.0451 1.5407 3.4613 42 1 3.1285 1.2747 4.2557 43 1 4.2495 2.6561 4.5006 44 1 3.9434 3.4584 2.3042 45 1 2.3835 2.5894 2.4363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343515147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:34 Heat of formation + Delta-G solvation = -119.131972 kcal Electronic energy + Delta-G solvation = -25284.135589 eV Core-core repulsion = 21494.394097 eV Total energy + Delta-G solvation = -3789.741492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.98843 -39.01773 -38.07069 -37.30151 -34.41091 -33.61640 -32.92365 -31.37941 -30.42947 -29.35190 -28.40422 -27.20180 -24.62114 -23.21415 -22.81661 -21.04598 -20.01849 -19.52210 -18.56386 -18.09227 -17.17790 -16.88825 -16.20721 -15.73295 -15.55826 -15.28768 -15.21471 -14.83043 -14.39057 -14.22465 -14.00128 -13.74826 -13.24607 -13.01265 -12.89385 -12.55442 -12.36763 -12.17006 -12.14101 -11.89965 -11.67231 -11.64474 -11.60370 -11.46081 -11.31011 -11.21729 -11.09912 -10.81299 -10.50592 -10.31140 -9.66367 -9.62270 -9.55503 -9.01483 -8.73600 -8.62230 -8.09761 -6.50986 -3.93099 1.87534 2.91117 3.14124 3.21544 3.24526 3.40188 3.69092 3.75137 4.11745 4.32414 4.38608 4.77704 4.81183 4.88585 4.89655 4.97121 5.06883 5.14786 5.17372 5.23597 5.31408 5.38418 5.43081 5.46054 5.51256 5.59294 5.65610 5.73196 5.78217 5.80759 5.92947 5.94120 5.98026 5.99309 6.08105 6.09078 6.27926 6.60114 6.73444 7.25290 7.46115 7.86423 7.92521 8.45145 8.52620 9.04900 9.39869 9.87888 10.65868 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002362 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.843298 B =11853.875392 C =12644.493131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.365 6.365 4 C 0.158 3.842 5 H 0.074 0.926 6 C -0.135 4.135 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.110 3.890 11 C 0.428 3.572 12 O -0.598 6.598 13 N -0.550 5.550 14 C -0.306 4.306 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.090 4.090 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -10.688 21.809 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.099 3.901 5 H 0.092 0.908 6 C -0.175 4.175 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.364 5.364 10 C -0.018 4.018 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.184 5.184 14 C -0.435 4.435 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.136 4.136 25 C -0.163 4.163 26 C -0.127 4.127 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.191 -10.645 21.664 24.139 hybrid contribution 0.368 0.461 -0.782 0.980 sum 0.559 -10.184 20.881 23.239 Atomic orbital electron populations 1.21709 0.94064 1.01863 1.02969 1.22398 0.95266 0.83932 0.99680 1.87914 1.19396 1.26427 1.94672 1.20330 0.82447 0.97408 0.89882 0.90825 1.21748 1.03301 0.99873 0.92559 1.20395 0.78885 0.82942 0.87741 1.90670 1.42233 1.31240 1.77923 1.45718 1.61413 1.20248 1.09043 1.20922 1.01102 0.97961 0.81796 1.19774 0.86200 0.89021 0.83616 1.90492 1.48370 1.43474 1.66118 1.41798 1.51535 1.18201 1.06896 1.19682 1.36600 0.95333 0.91877 0.87740 1.25328 0.96672 0.99101 0.96629 1.69605 1.40896 1.32801 1.10223 0.85869 0.79162 0.81036 0.77875 1.19777 1.20858 1.19769 1.22542 0.98450 0.97887 0.96369 1.23200 0.98635 0.99251 0.96746 1.21336 0.98860 0.99729 0.93638 1.22478 0.97788 0.98991 0.97027 1.21245 1.01780 0.97630 0.92025 0.91472 0.92285 0.91652 0.92942 0.94150 0.87643 0.87902 0.75216 0.89998 0.89951 0.77037 0.91539 0.85942 0.91303 0.90661 0.91260 0.91029 0.90585 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.74 6.46 37.16 0.24 0.98 16 3 O -0.37 -4.89 9.19 -49.66 -0.46 -5.35 16 4 C 0.16 1.85 2.05 -27.89 -0.06 1.80 16 5 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 6 C -0.13 -1.58 5.35 -27.89 -0.15 -1.73 16 7 C 0.51 8.08 7.71 -10.98 -0.08 7.99 16 8 O -0.54 -10.06 15.42 -8.87 -0.14 -10.19 16 9 N -0.71 -11.87 5.53 -61.47 -0.34 -12.21 16 10 C 0.11 2.06 6.15 -5.19 -0.03 2.03 16 11 C 0.43 9.90 7.85 -10.98 -0.09 9.81 16 12 O -0.60 -15.36 15.24 5.55 0.08 -15.28 16 13 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 14 C -0.31 -8.34 9.68 -14.93 -0.14 -8.49 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 18 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.15 -1.49 5.03 -100.74 -0.51 -2.00 16 23 C -0.16 -1.39 10.55 -35.70 -0.38 -1.77 16 24 C -0.10 -0.71 6.81 -26.82 -0.18 -0.89 16 25 C -0.13 -0.91 7.20 -24.92 -0.18 -1.09 16 26 C -0.09 -0.79 6.70 -26.74 -0.18 -0.97 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.41 6.68 7.44 -40.82 -0.30 6.38 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -31.54 380.38 -8.21 -39.76 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.29 Total: 13.92 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.45 Total: 5.12 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.33 Total: -49.29 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.51 Total: -30.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.54 -8.21 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343515147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.373 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds