Wall clock time and date at job start Fri Apr 10 2020 18:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46904 * 2 1 4 4 C 1.42899 * 113.99841 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47078 * 29.99808 * 4 3 2 6 6 C 1.52992 * 109.47135 * 149.99697 * 4 3 2 7 7 C 1.50700 * 109.47257 * 294.99778 * 6 4 3 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 4 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99635 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47011 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99914 * 180.02562 * 11 10 9 14 14 C 1.37104 * 119.99647 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00062 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47017 * 60.00263 * 18 16 14 20 20 H 1.48498 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47114 * 300.00455 * 18 16 14 22 22 C 1.50699 * 109.46930 * 269.99779 * 4 3 2 23 23 C 1.30527 * 124.44757 * 125.02282 * 22 4 3 24 24 C 1.51103 * 111.10476 * 179.97438 * 23 22 4 25 25 C 1.54641 * 104.72301 * 16.44423 * 24 23 22 26 26 C 1.51104 * 124.44954 * 304.72347 * 22 4 3 27 27 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47428 * 300.00506 * 1 2 3 29 29 H 1.08997 * 109.46944 * 60.00553 * 1 2 3 30 30 H 1.08995 * 109.47051 * 239.99626 * 2 1 3 31 31 H 1.09005 * 109.46691 * 119.99637 * 2 1 3 32 32 H 1.09004 * 109.47330 * 174.99800 * 6 4 3 33 33 H 1.08997 * 109.47279 * 55.00287 * 6 4 3 34 34 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 35 35 H 1.09005 * 109.47306 * 299.99972 * 10 9 7 36 36 H 1.09002 * 109.47518 * 60.00210 * 10 9 7 37 37 H 0.97000 * 120.00556 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99972 * 179.97438 * 17 16 14 39 39 H 1.08001 * 124.44792 * 0.02562 * 23 22 4 40 40 H 1.09004 * 110.38717 * 135.24500 * 24 23 22 41 41 H 1.08995 * 110.39197 * 257.62810 * 24 23 22 42 42 H 1.08999 * 111.04215 * 93.39554 * 25 24 23 43 43 H 1.09003 * 111.03301 * 217.29285 * 25 24 23 44 44 H 1.09003 * 110.38154 * 282.39858 * 26 22 4 45 45 H 1.08997 * 110.38356 * 44.77177 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8403 2.7458 -0.7218 7 6 3.4471 2.6543 -2.1738 8 8 2.8934 1.6590 -2.5905 9 7 3.7107 3.6786 -3.0092 10 6 3.3280 3.5898 -4.4205 11 6 3.7325 4.8556 -5.1313 12 8 4.2865 5.7443 -4.5192 13 7 3.4787 5.0002 -6.4470 14 6 3.8463 6.1520 -7.0934 15 1 4.3388 6.9436 -6.5483 16 6 3.5851 6.3009 -8.4501 17 7 2.9853 5.3379 -9.1133 18 14 4.0853 7.8705 -9.3307 19 1 5.5558 8.0493 -9.2268 20 1 3.6969 7.7807 -10.7612 21 1 3.4002 9.0295 -8.7041 22 6 3.9322 1.4996 1.4200 23 6 4.8279 0.6863 1.9098 24 6 5.1068 0.9950 3.3624 25 6 3.9197 1.8786 3.8114 26 6 3.4686 2.4901 2.4628 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.9196 2.8774 -0.6454 33 1 3.3372 3.5963 -0.2620 34 1 4.1500 4.4762 -2.6751 35 1 3.8304 2.7388 -4.8804 36 1 2.2485 3.4590 -4.4967 37 1 3.0360 4.2894 -6.9365 38 1 2.8027 5.4421 -10.0602 39 1 5.3074 -0.1031 1.3500 40 1 5.1379 0.0754 3.9469 41 1 6.0451 1.5407 3.4613 42 1 3.1285 1.2747 4.2557 43 1 4.2495 2.6561 4.5006 44 1 3.9434 3.4584 2.3042 45 1 2.3835 2.5894 2.4363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343515147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:33 Heat of formation + Delta-G solvation = -139.377866 kcal Electronic energy + Delta-G solvation = -25285.013517 eV Core-core repulsion = 21494.394097 eV Total energy + Delta-G solvation = -3790.619420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16845 -40.27675 -39.55870 -38.18303 -36.24318 -35.23734 -33.83799 -33.37502 -31.35208 -30.25380 -29.24194 -28.47899 -26.42614 -24.24333 -23.68398 -21.75866 -21.38165 -21.17877 -20.06716 -19.37008 -18.39503 -17.85815 -17.33381 -17.22500 -16.75867 -16.68450 -16.32867 -16.10057 -15.83650 -15.64066 -15.42940 -14.98887 -14.60078 -14.00450 -13.89899 -13.64770 -13.54813 -13.50317 -13.29160 -13.08454 -12.91703 -12.77310 -12.57042 -12.47955 -12.42257 -12.14020 -12.05530 -12.03463 -11.89317 -11.68053 -11.56910 -10.95485 -10.57446 -10.47541 -10.17676 -10.08076 -9.69210 -8.51631 -6.02166 1.16817 1.37621 1.42261 1.53382 1.65302 1.90559 2.06520 2.32449 2.79633 3.12728 3.15360 3.56307 3.71658 3.85987 4.02451 4.13555 4.18920 4.22601 4.24715 4.37204 4.39893 4.40920 4.49274 4.51810 4.52889 4.57591 4.79240 4.86180 4.90945 4.96135 5.04931 5.06362 5.08697 5.23091 5.25798 5.30848 5.37776 5.40742 5.60765 5.90015 5.90924 6.36098 6.45679 6.56575 7.02393 7.21651 7.43539 7.93281 8.65082 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002362 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.843298 B =11853.875392 C =12644.493131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 O -0.386 6.386 4 C 0.158 3.842 5 H 0.063 0.937 6 C -0.127 4.127 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.711 5.711 10 C 0.122 3.878 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.098 4.098 25 C -0.122 4.122 26 C -0.091 4.091 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.414 0.586 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.398 0.602 38 H 0.280 0.720 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -10.778 23.093 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 O -0.306 6.306 4 C 0.099 3.901 5 H 0.081 0.919 6 C -0.167 4.167 7 C 0.302 3.698 8 O -0.452 6.452 9 N -0.365 5.365 10 C -0.005 4.005 11 C 0.220 3.780 12 O -0.512 6.512 13 N -0.196 5.196 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.168 4.168 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.160 4.160 26 C -0.128 4.128 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.799 -10.751 22.966 25.371 hybrid contribution 0.182 0.421 -1.133 1.222 sum 0.981 -10.331 21.833 24.174 Atomic orbital electron populations 1.21715 0.93168 1.03088 1.02274 1.22476 0.96048 0.83340 0.99605 1.87882 1.20453 1.27416 1.94847 1.20350 0.81787 0.96777 0.91162 0.91881 1.21813 1.04945 1.00556 0.89375 1.21082 0.77818 0.81886 0.88987 1.90660 1.43514 1.32285 1.78722 1.45760 1.61697 1.20837 1.08236 1.20726 1.01482 0.95592 0.82749 1.20438 0.84650 0.89865 0.83062 1.90467 1.49192 1.44899 1.66594 1.41859 1.52154 1.17932 1.07618 1.19711 1.38221 0.96050 0.92759 0.89531 1.26152 0.96137 1.02150 0.96765 1.69675 1.41094 1.34214 1.10681 0.84918 0.78835 0.77147 0.77028 1.19397 1.19626 1.19470 1.22401 0.99591 0.99270 0.95526 1.23455 0.97513 0.98446 0.97611 1.21386 0.99186 1.00377 0.92569 1.22490 0.97821 0.99305 0.96371 1.21259 1.01032 0.97795 0.92674 0.89341 0.91732 0.93474 0.94403 0.92725 0.85116 0.86752 0.74835 0.88968 0.89321 0.76754 0.91049 0.85383 0.90172 0.89669 0.91217 0.89727 0.90142 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.06 1.41 6.46 71.98 0.46 1.87 16 3 O -0.39 -10.27 9.19 -135.19 -1.24 -11.51 16 4 C 0.16 3.58 2.05 29.85 0.06 3.64 16 5 H 0.06 1.53 7.52 -2.38 -0.02 1.52 16 6 C -0.13 -2.84 5.35 29.85 0.16 -2.68 16 7 C 0.51 15.85 7.71 87.66 0.68 16.52 16 8 O -0.57 -21.19 15.42 10.77 0.17 -21.02 16 9 N -0.71 -23.36 5.53 -466.77 -2.58 -25.94 16 10 C 0.12 4.56 6.15 85.64 0.53 5.09 16 11 C 0.43 20.17 7.85 87.66 0.69 20.86 16 12 O -0.62 -32.32 15.24 -3.07 -0.05 -32.37 16 13 N -0.56 -28.45 5.29 -306.97 -1.62 -30.07 16 14 C -0.34 -18.74 9.68 84.04 0.81 -17.92 16 15 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 17 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 18 Si 1.00 41.86 29.55 68.60 2.03 43.88 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 C -0.17 -3.03 5.03 -15.87 -0.08 -3.11 16 23 C -0.15 -2.33 10.55 26.26 0.28 -2.05 16 24 C -0.10 -1.16 6.81 30.53 0.21 -0.95 16 25 C -0.12 -1.50 7.20 31.77 0.23 -1.27 16 26 C -0.09 -1.45 6.70 30.59 0.21 -1.25 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.41 13.20 7.44 -92.71 -0.69 12.51 16 35 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 36 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 38 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.31 380.38 2.00 -65.32 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -0.42 Total: 43.97 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.44 Total: 16.48 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -3.92 Total: -104.75 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -1.12 Total: -64.90 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.31 2.00 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343515147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.058 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds