Wall clock time and date at job start Fri Apr 10 2020 18:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.77624 * 2 1 4 4 C 1.51274 * 109.62484 * 239.52725 * 2 1 3 5 5 O 1.20760 * 120.84811 * 8.92103 * 4 2 1 6 6 C 1.51267 * 118.29976 * 188.93598 * 4 2 1 7 7 C 1.53226 * 108.53850 * 51.34771 * 6 4 2 8 8 C 1.52961 * 109.40563 * 305.37364 * 7 6 4 9 9 H 1.09004 * 109.41319 * 303.56705 * 8 7 6 10 10 C 1.50699 * 109.41561 * 183.70086 * 8 7 6 11 11 O 1.21276 * 119.99880 * 326.32315 * 10 8 7 12 12 N 1.34780 * 119.99894 * 146.31958 * 10 8 7 13 13 C 1.46496 * 119.99747 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46983 * 179.97438 * 13 12 10 15 15 O 1.21303 * 120.00181 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00355 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00429 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00087 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00201 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47264 * 179.97438 * 21 19 17 23 23 H 1.48507 * 109.47111 * 299.99363 * 21 19 17 24 24 H 1.48499 * 109.47464 * 59.99449 * 21 19 17 25 25 C 1.52963 * 109.75862 * 63.63129 * 8 7 6 26 26 C 1.52997 * 109.48460 * 56.34843 * 25 8 7 27 27 C 1.53001 * 109.48046 * 176.39044 * 25 8 7 28 28 H 1.09004 * 109.46964 * 180.47149 * 1 2 3 29 29 H 1.09000 * 109.47215 * 300.46584 * 1 2 3 30 30 H 1.08996 * 109.47357 * 60.47585 * 1 2 3 31 31 H 1.09004 * 109.62382 * 291.63244 * 6 4 2 32 32 H 1.09000 * 109.62535 * 171.06858 * 6 4 2 33 33 H 1.08995 * 109.48324 * 185.39554 * 7 6 4 34 34 H 1.09003 * 109.48023 * 65.35339 * 7 6 4 35 35 H 0.97001 * 119.99650 * 0.02562 * 12 10 8 36 36 H 1.09003 * 109.47012 * 60.00372 * 13 12 10 37 37 H 1.08991 * 109.47215 * 299.99925 * 13 12 10 38 38 H 0.97001 * 119.99783 * 0.02562 * 16 14 13 39 39 H 0.96998 * 119.99352 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.46925 * 59.99755 * 26 25 8 41 41 H 1.08998 * 109.47336 * 180.02562 * 26 25 8 42 42 H 1.09006 * 109.47079 * 300.00143 * 26 25 8 43 43 H 1.08993 * 109.47460 * 55.10145 * 27 25 8 44 44 H 1.09001 * 109.46975 * 175.10416 * 27 25 8 45 45 H 1.09004 * 109.46690 * 295.09862 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0381 -0.7226 -1.2281 5 8 1.2813 -1.0543 -2.1087 6 6 3.5182 -1.0194 -1.3245 7 6 3.9609 -1.7145 -0.0327 8 6 3.5677 -0.8529 1.1685 9 1 4.0039 0.1402 1.0603 10 6 4.0826 -1.4912 2.4328 11 8 4.1361 -2.6994 2.5238 12 7 4.4838 -0.7194 3.4623 13 6 4.9849 -1.3399 4.6911 14 6 5.3651 -0.2658 5.6773 15 8 5.2302 0.9032 5.3829 16 7 5.8549 -0.6039 6.8866 17 6 6.2003 0.3733 7.7840 18 1 6.0802 1.4141 7.5218 19 6 6.7058 0.0247 9.0305 20 7 6.8523 -1.2417 9.3492 21 14 7.1770 1.3562 10.2529 22 1 7.6855 0.7273 11.4983 23 1 8.2351 2.2163 9.6646 24 1 5.9848 2.1835 10.5678 25 6 2.0446 -0.7338 1.2430 26 6 1.4258 -2.1316 1.3049 27 6 1.6550 0.0530 2.4960 28 1 -0.3633 -1.0277 0.0085 29 1 -0.3633 0.5210 0.8858 30 1 -0.3634 0.5064 -0.8942 31 1 4.0711 -0.0880 -1.4470 32 1 3.7057 -1.6742 -2.1754 33 1 5.0424 -1.8495 -0.0447 34 1 3.4737 -2.6867 0.0423 35 1 4.4408 0.2469 3.3895 36 1 5.8602 -1.9473 4.4606 37 1 4.2080 -1.9711 5.1223 38 1 5.9631 -1.5386 7.1219 39 1 7.2049 -1.4850 10.2195 40 1 1.7931 -2.6527 2.1891 41 1 0.3404 -2.0465 1.3576 42 1 1.7031 -2.6917 0.4118 43 1 2.1651 1.0162 2.4935 44 1 0.5768 0.2129 2.5041 45 1 1.9455 -0.5097 3.3833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:37 Heat of formation + Delta-G solvation = -154.320151 kcal Electronic energy + Delta-G solvation = -26557.561775 eV Core-core repulsion = 22766.294409 eV Total energy + Delta-G solvation = -3791.267366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.22716 -40.67715 -39.87863 -38.11923 -36.23093 -35.28054 -34.55900 -33.35915 -32.04021 -29.79507 -28.34321 -28.21818 -26.48109 -26.30452 -23.28441 -21.75045 -21.34996 -20.96183 -20.03731 -19.15369 -18.36085 -17.30292 -17.24587 -17.00894 -16.66821 -16.64921 -16.27401 -16.21811 -15.77058 -15.51472 -14.97367 -14.89153 -14.46891 -14.34904 -13.93463 -13.75018 -13.54107 -13.53203 -13.47152 -13.08452 -12.90795 -12.86485 -12.76492 -12.72098 -12.45554 -12.38854 -12.24197 -12.13475 -11.75839 -11.56804 -11.54205 -11.40282 -10.71268 -10.52254 -10.31660 -10.13185 -10.04443 -8.49857 -5.99839 0.97309 1.38983 1.43670 1.54233 1.62922 1.93642 2.06900 2.33487 3.06242 3.16038 3.17716 3.46188 3.53613 3.61371 3.84195 4.09557 4.12945 4.20866 4.25622 4.27913 4.37190 4.42867 4.45906 4.48844 4.59895 4.64832 4.75959 4.81869 4.91755 4.95746 4.99475 5.02309 5.10040 5.12151 5.19758 5.24511 5.34293 5.39958 5.43940 5.47423 5.93340 6.48211 6.53218 6.60147 7.04996 7.23927 7.46843 7.96251 8.66863 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.002724 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.689207 B =10275.677824 C =10561.316073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 H 0.135 0.865 4 C 0.367 3.633 5 O -0.490 6.490 6 C -0.162 4.162 7 C -0.096 4.096 8 C -0.098 4.098 9 H 0.125 0.875 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.120 3.880 14 C 0.434 3.566 15 O -0.621 6.621 16 N -0.562 5.562 17 C -0.336 4.336 18 H 0.088 0.912 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.995 3.005 22 H -0.274 1.274 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.031 4.031 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.398 0.602 39 H 0.279 0.721 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 1.821 -17.478 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 H 0.152 0.848 4 C 0.245 3.755 5 O -0.366 6.366 6 C -0.200 4.200 7 C -0.134 4.134 8 C -0.119 4.119 9 H 0.143 0.857 10 C 0.311 3.689 11 O -0.454 6.454 12 N -0.358 5.358 13 C -0.008 4.008 14 C 0.221 3.779 15 O -0.509 6.509 16 N -0.197 5.197 17 C -0.465 4.465 18 H 0.106 0.894 19 C -0.211 4.211 20 N -0.558 5.558 21 Si 0.818 3.182 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.031 4.031 26 C -0.208 4.208 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.495 1.454 -17.855 19.826 hybrid contribution 0.465 0.088 1.132 1.226 sum -8.030 1.542 -16.723 18.615 Atomic orbital electron populations 1.21777 0.92983 1.02464 1.02793 1.21943 0.98134 1.01901 0.92350 0.84762 1.25267 0.91467 0.73404 0.85392 1.90387 1.61047 1.44033 1.41096 1.22338 0.93905 1.04599 0.99144 1.21389 1.02660 0.98529 0.90850 1.21519 0.96666 1.02247 0.91451 0.85730 1.20928 0.76217 0.86836 0.84922 1.90675 1.56174 1.15689 1.82901 1.45842 1.64572 1.11593 1.13821 1.20738 1.00880 0.93897 0.85252 1.20436 0.83451 0.90038 0.83933 1.90472 1.60980 1.20865 1.78551 1.41861 1.55390 1.09811 1.12637 1.19704 1.41502 0.90106 0.95238 0.89438 1.26112 0.96360 0.99341 0.99334 1.69676 1.45085 1.17275 1.23749 0.84950 0.78789 0.77502 0.76910 1.19832 1.19427 1.19449 1.20307 0.91707 0.95852 0.95261 1.22082 1.01312 0.95617 1.01794 1.22064 1.03203 1.00346 0.95266 0.92933 0.90220 0.92253 0.85214 0.88711 0.89679 0.91476 0.74725 0.89051 0.89237 0.76833 0.91137 0.93299 0.91166 0.92937 0.90567 0.90447 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.87 71.98 0.57 -1.55 16 2 C -0.12 -1.75 2.26 -11.28 -0.03 -1.77 16 3 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.37 6.32 5.60 29.46 0.17 6.48 16 5 O -0.49 -11.90 16.86 -1.45 -0.02 -11.93 16 6 C -0.16 -2.10 6.17 30.10 0.19 -1.91 16 7 C -0.10 -1.60 4.53 30.66 0.14 -1.47 16 8 C -0.10 -1.74 1.77 -11.57 -0.02 -1.76 16 9 H 0.12 1.55 8.12 -2.38 -0.02 1.53 16 10 C 0.52 13.78 5.14 87.66 0.45 14.23 16 11 O -0.57 -18.96 15.13 -3.02 -0.05 -19.01 16 12 N -0.70 -20.24 4.84 -466.81 -2.26 -22.50 16 13 C 0.12 4.10 6.15 85.63 0.53 4.62 16 14 C 0.43 19.02 7.85 87.66 0.69 19.71 16 15 O -0.62 -30.21 15.24 -3.10 -0.05 -30.26 16 16 N -0.56 -27.33 5.29 -306.97 -1.62 -28.95 16 17 C -0.34 -18.05 9.68 84.04 0.81 -17.23 16 18 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.13 13.05 21.66 0.28 -47.85 16 21 Si 1.00 40.92 29.55 68.60 2.03 42.94 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 C -0.03 -0.52 0.32 -52.11 -0.02 -0.53 16 26 C -0.15 -3.13 7.05 71.98 0.51 -2.62 16 27 C -0.15 -2.65 7.76 71.98 0.56 -2.09 16 28 H 0.05 0.90 6.31 -2.38 -0.02 0.89 16 29 H 0.08 0.96 6.55 -2.39 -0.02 0.94 16 30 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 31 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.38 6.02 -2.39 -0.01 1.37 16 35 H 0.41 11.52 7.42 -92.71 -0.69 10.83 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 39 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 40 H 0.05 1.24 6.60 -2.39 -0.02 1.23 16 41 H 0.07 1.31 6.34 -2.39 -0.02 1.29 16 42 H 0.05 1.13 5.60 -2.38 -0.01 1.11 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.16 6.41 -2.39 -0.02 1.15 16 45 H 0.04 0.96 6.95 -2.38 -0.02 0.95 16 Total: -1.00 -67.00 353.67 2.93 -64.07 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.39 Total: 39.46 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.01 Total: 14.02 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -3.60 Total: -99.30 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -0.12 Total: -61.19 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -67.00 2.93 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.250 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds