Wall clock time and date at job start Fri Apr 10 2020 18:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.77606 * 2 1 4 4 C 1.51264 * 109.62738 * 120.47814 * 2 1 3 5 5 O 1.20762 * 120.84850 * 248.34612 * 4 2 1 6 6 C 1.51265 * 118.29920 * 68.62136 * 4 2 1 7 7 C 1.52790 * 108.76536 * 51.03759 * 6 4 2 8 8 C 1.52962 * 109.48196 * 305.60949 * 7 6 4 9 9 H 1.08999 * 109.35614 * 303.39249 * 8 7 6 10 10 C 1.50711 * 109.41121 * 183.57570 * 8 7 6 11 11 O 1.21284 * 119.99577 * 263.37626 * 10 8 7 12 12 N 1.34768 * 120.00289 * 83.38019 * 10 8 7 13 13 C 1.46497 * 120.00114 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47215 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99879 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99841 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99717 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99941 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99925 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99950 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99869 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46691 * 90.00069 * 21 19 17 23 23 H 1.48498 * 109.47001 * 209.99859 * 21 19 17 24 24 H 1.48497 * 109.46937 * 330.00146 * 21 19 17 25 25 C 1.52950 * 109.81758 * 63.46694 * 8 7 6 26 26 C 1.53008 * 109.48241 * 176.42270 * 25 8 7 27 27 C 1.53000 * 109.49819 * 56.38940 * 25 8 7 28 28 H 1.09000 * 109.46873 * 299.52039 * 1 2 3 29 29 H 1.08998 * 109.47142 * 59.52251 * 1 2 3 30 30 H 1.09000 * 109.47008 * 179.52108 * 1 2 3 31 31 H 1.09006 * 109.62362 * 170.81126 * 6 4 2 32 32 H 1.08999 * 109.62909 * 291.37578 * 6 4 2 33 33 H 1.09000 * 109.55405 * 185.53752 * 7 6 4 34 34 H 1.09003 * 109.33886 * 65.54433 * 7 6 4 35 35 H 0.97007 * 119.99904 * 0.02562 * 12 10 8 36 36 H 1.09007 * 109.47033 * 299.99839 * 13 12 10 37 37 H 1.08997 * 109.47487 * 59.99844 * 13 12 10 38 38 H 0.96994 * 120.00084 * 0.02562 * 16 14 13 39 39 H 0.96999 * 119.99561 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.47297 * 178.51031 * 26 25 8 41 41 H 1.09003 * 109.47159 * 298.51086 * 26 25 8 42 42 H 1.09002 * 109.46911 * 58.50979 * 26 25 8 43 43 H 1.09006 * 109.46609 * 300.06430 * 27 25 8 44 44 H 1.09000 * 109.47072 * 60.05812 * 27 25 8 45 45 H 1.08995 * 109.47433 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0258 0.0000 4 6 2.0381 -0.7226 1.2279 5 8 2.6065 -0.1228 2.1085 6 6 1.8217 -2.2168 1.3215 7 6 2.3209 -2.8675 0.0323 8 6 1.6430 -2.2058 -1.1687 9 1 0.5611 -2.2815 -1.0599 10 6 2.0693 -2.9064 -2.4332 11 8 2.9771 -2.4558 -3.0994 12 7 1.4419 -4.0334 -2.8235 13 6 1.8559 -4.7140 -4.0529 14 6 1.0018 -5.9379 -4.2616 15 8 0.1324 -6.2142 -3.4623 16 7 1.2034 -6.7250 -5.3370 17 6 0.4266 -7.8387 -5.5266 18 1 -0.3470 -8.0851 -4.8144 19 6 0.6347 -8.6504 -6.6350 20 7 -0.1101 -9.7176 -6.8170 21 14 1.9733 -8.2245 -7.8665 22 1 3.2446 -8.8761 -7.4608 23 1 1.5779 -8.7069 -9.2141 24 1 2.1616 -6.7520 -7.9033 25 6 2.0447 -0.7319 -1.2438 26 6 1.4347 -0.1000 -2.4967 27 6 3.5693 -0.6207 -1.3070 28 1 -0.3633 0.5064 0.8943 29 1 -0.3633 0.5212 -0.8856 30 1 -0.3633 -1.0276 -0.0086 31 1 2.3779 -2.6148 2.1703 32 1 0.7592 -2.4258 1.4461 33 1 2.0821 -3.9309 0.0442 34 1 3.4006 -2.7380 -0.0428 35 1 0.7156 -4.3935 -2.2908 36 1 1.7358 -4.0388 -4.9002 37 1 2.9016 -5.0101 -3.9698 38 1 1.8984 -6.5038 -5.9764 39 1 0.0350 -10.2840 -7.5910 40 1 1.6991 0.9567 -2.5362 41 1 1.8204 -0.6044 -3.3827 42 1 0.3499 -0.2021 -2.4638 43 1 4.0037 -1.0714 -0.4146 44 1 3.9353 -1.1414 -2.1919 45 1 3.8551 0.4298 -1.3601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:48 Heat of formation + Delta-G solvation = -121.377150 kcal Electronic energy + Delta-G solvation = -26579.675591 eV Core-core repulsion = 22789.836741 eV Total energy + Delta-G solvation = -3789.838850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47041 -39.55499 -38.51806 -37.20651 -34.66925 -33.96829 -33.42555 -31.85970 -31.57422 -29.18332 -27.48193 -27.09889 -24.95786 -24.36178 -22.96487 -21.10421 -20.21516 -19.68455 -18.80428 -18.07095 -17.37659 -16.37070 -15.97002 -15.66186 -15.57535 -15.38913 -15.00402 -14.88770 -14.59856 -14.46441 -14.12255 -13.78143 -13.38452 -13.19543 -13.09698 -12.79793 -12.67066 -12.56058 -12.30509 -12.22532 -12.02773 -11.93803 -11.89869 -11.71512 -11.43408 -11.27392 -11.03488 -10.85478 -10.68973 -10.51612 -10.11270 -9.75081 -9.59044 -9.39469 -8.96284 -8.83630 -8.35852 -6.45706 -3.98569 1.68342 2.62451 2.95152 2.99925 3.08162 3.16978 3.50131 3.76661 3.98908 4.13772 4.31553 4.44115 4.52409 4.56020 4.71236 4.82547 4.92562 5.02942 5.06456 5.09023 5.16303 5.22752 5.35211 5.41089 5.53287 5.56163 5.60854 5.61510 5.67547 5.71040 5.71768 5.74130 5.80752 5.87892 5.91152 6.07030 6.21101 6.31323 6.65403 7.21295 7.38634 7.64520 7.95002 8.29407 8.40525 8.76513 9.24475 9.57444 10.66387 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.002848 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.413187 B = 9828.403018 C =10138.322073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 H 0.097 0.903 4 C 0.370 3.630 5 O -0.459 6.459 6 C -0.168 4.168 7 C -0.108 4.108 8 C -0.104 4.104 9 H 0.100 0.900 10 C 0.521 3.479 11 O -0.539 6.539 12 N -0.705 5.705 13 C 0.105 3.895 14 C 0.436 3.564 15 O -0.579 6.579 16 N -0.575 5.575 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.873 5.873 21 Si 0.879 3.121 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.030 4.030 26 C -0.150 4.150 27 C -0.167 4.167 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.374 0.626 39 H 0.276 0.724 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 17.731 10.578 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 H 0.115 0.885 4 C 0.245 3.755 5 O -0.332 6.332 6 C -0.206 4.206 7 C -0.146 4.146 8 C -0.125 4.125 9 H 0.118 0.882 10 C 0.307 3.693 11 O -0.417 6.417 12 N -0.359 5.359 13 C -0.022 4.022 14 C 0.222 3.778 15 O -0.464 6.464 16 N -0.213 5.213 17 C -0.440 4.440 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.512 5.512 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.031 4.031 26 C -0.207 4.207 27 C -0.224 4.224 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.208 0.792 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.293 17.942 10.946 21.451 hybrid contribution 0.542 -0.127 -0.923 1.078 sum 4.835 17.815 10.023 21.005 Atomic orbital electron populations 1.21877 0.92569 1.03059 1.02991 1.22046 0.97911 1.00908 0.94072 0.88507 1.24871 0.73773 0.91258 0.85574 1.90401 1.32198 1.70767 1.39836 1.22227 1.04379 0.94122 0.99869 1.21467 1.01616 1.00373 0.91161 1.21442 1.02443 0.95349 0.93267 0.88166 1.20358 0.82175 0.80206 0.86524 1.90550 1.29982 1.65185 1.56002 1.45781 1.38216 1.25914 1.25981 1.20983 0.99065 0.94113 0.88076 1.19639 0.87768 0.86020 0.84325 1.90539 1.36190 1.73946 1.45714 1.42132 1.32956 1.24285 1.21917 1.19439 1.15263 0.99308 1.09951 0.86068 1.25071 0.97666 0.95633 0.97489 1.69616 1.38354 1.13952 1.29281 0.86674 0.82205 0.78880 0.81746 1.19372 1.19952 1.19236 1.20265 0.97028 0.91802 0.93972 1.22041 1.00423 1.00837 0.97447 1.22398 0.93423 1.02082 1.04456 0.92239 0.90689 0.91492 0.88862 0.87920 0.89634 0.90121 0.75002 0.89715 0.89713 0.79249 0.91333 0.92396 0.90673 0.92367 0.93453 0.87657 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.37 37.16 0.31 -0.66 16 2 C -0.13 -1.09 2.24 -91.38 -0.21 -1.30 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.37 3.62 5.10 -28.48 -0.15 3.47 16 5 O -0.46 -6.05 17.89 6.00 0.11 -5.95 16 6 C -0.17 -1.30 5.87 -27.71 -0.16 -1.46 16 7 C -0.11 -0.92 4.92 -26.86 -0.13 -1.06 16 8 C -0.10 -0.97 1.61 -91.81 -0.15 -1.12 16 9 H 0.10 0.78 6.39 -51.93 -0.33 0.45 16 10 C 0.52 6.55 6.13 -10.98 -0.07 6.48 16 11 O -0.54 -7.97 11.98 5.55 0.07 -7.90 16 12 N -0.71 -9.77 5.53 -61.47 -0.34 -10.10 16 13 C 0.11 1.66 6.15 -5.19 -0.03 1.63 16 14 C 0.44 9.06 7.85 -10.98 -0.09 8.98 16 15 O -0.58 -13.89 15.24 5.55 0.08 -13.80 16 16 N -0.58 -12.86 5.09 -10.96 -0.06 -12.91 16 17 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 18 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 19 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 20 N -0.87 -24.47 13.96 55.50 0.77 -23.69 16 21 Si 0.88 18.52 27.74 -169.99 -4.71 13.80 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 25 C -0.03 -0.28 0.29 -154.41 -0.04 -0.32 16 26 C -0.15 -1.39 7.57 37.16 0.28 -1.11 16 27 C -0.17 -1.77 7.60 37.16 0.28 -1.48 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.45 6.46 -51.93 -0.34 0.12 16 30 H 0.07 0.39 5.99 -51.93 -0.31 0.08 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.60 7.83 -51.93 -0.41 0.20 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.76 6.20 -51.93 -0.32 0.43 16 35 H 0.41 5.65 7.44 -40.82 -0.30 5.35 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 39 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 42 H 0.06 0.47 6.47 -51.93 -0.34 0.14 16 43 H 0.05 0.50 5.61 -51.93 -0.29 0.21 16 44 H 0.11 1.33 5.15 -51.93 -0.27 1.06 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -31.82 347.79 -5.63 -37.45 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -6.40 Total: 13.21 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.40 Total: 4.66 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.38 Total: -46.71 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.26 Total: -27.65 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.71 Total: 13.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.82 -5.63 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.924 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds