Wall clock time and date at job start Fri Apr 10 2020 18:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99598 * 2 1 4 4 N 1.46502 * 109.46660 * 126.18030 * 3 2 1 5 5 C 1.46495 * 120.00113 * 276.11114 * 4 3 2 6 6 C 1.50696 * 109.47443 * 270.00482 * 5 4 3 7 7 H 1.08008 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00523 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99401 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00629 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47252 * 89.99675 * 10 8 6 12 12 H 1.48498 * 109.47452 * 210.00005 * 10 8 6 13 13 H 1.48502 * 109.46836 * 330.00138 * 10 8 6 14 14 C 1.34778 * 120.00173 * 96.11754 * 4 3 2 15 15 O 1.21280 * 119.99970 * 174.65116 * 14 4 3 16 16 C 1.50703 * 119.99948 * 354.64797 * 14 4 3 17 17 H 1.08997 * 109.47057 * 5.34266 * 16 14 4 18 18 N 1.46504 * 109.47133 * 125.33807 * 16 14 4 19 19 C 1.34769 * 119.99946 * 205.00109 * 18 16 14 20 20 O 1.21287 * 120.00268 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99992 * 179.97438 * 19 18 16 22 22 C 1.52999 * 117.49989 * 248.62168 * 21 19 18 23 23 C 1.52997 * 60.00261 * 252.50995 * 22 21 19 24 24 C 1.52995 * 109.46967 * 245.34011 * 16 14 4 25 25 H 1.09003 * 109.47031 * 185.86294 * 24 16 14 26 26 C 1.52995 * 109.47572 * 65.86124 * 24 16 14 27 27 O 1.42899 * 109.47381 * 305.85826 * 24 16 14 28 28 H 1.08006 * 119.99546 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00012 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47561 * 6.17724 * 3 2 1 32 32 H 1.08998 * 109.46937 * 246.17631 * 3 2 1 33 33 H 1.09002 * 109.47012 * 30.00029 * 5 4 3 34 34 H 1.09004 * 109.47552 * 150.00174 * 5 4 3 35 35 H 0.97009 * 119.99633 * 180.02562 * 9 8 6 36 36 H 0.97000 * 119.99785 * 24.99611 * 18 16 14 37 37 H 1.09004 * 115.54764 * 34.33603 * 21 19 18 38 38 H 1.08993 * 117.50036 * 0.02562 * 22 21 19 39 39 H 1.09008 * 117.49520 * 145.02243 * 22 21 19 40 40 H 1.09004 * 117.50177 * 252.51398 * 23 22 21 41 41 H 1.09000 * 117.51861 * 107.47589 * 23 22 21 42 42 H 1.09004 * 109.47211 * 55.54443 * 26 24 16 43 43 H 1.09001 * 109.47381 * 175.54457 * 26 24 16 44 44 H 1.08992 * 109.47108 * 295.54711 * 26 24 16 45 45 H 0.96695 * 114.00132 * 180.02562 * 27 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0137 1.3203 1.1149 5 6 2.5664 1.7134 2.4534 6 6 2.7323 3.2017 2.6216 7 1 3.1315 3.7955 1.8125 8 6 2.3745 3.8056 3.8084 9 7 1.8879 3.0826 4.7934 10 14 2.5795 5.6505 4.0167 11 1 1.3384 6.3390 3.5798 12 1 2.8414 5.9614 5.4450 13 1 3.7218 6.1180 3.1909 14 6 4.2996 0.9728 0.9092 15 8 5.1073 1.0779 1.8078 16 6 4.7336 0.4535 -0.4373 17 1 3.9009 0.5187 -1.1375 18 7 5.8529 1.2582 -0.9334 19 6 6.0873 1.3424 -2.2578 20 8 5.3714 0.7524 -3.0392 21 6 7.2383 2.1705 -2.7682 22 6 6.9018 3.4468 -3.5420 23 6 7.4520 2.2261 -4.2822 24 6 5.1743 -1.0055 -0.3033 25 1 5.5854 -1.3495 -1.2524 26 6 3.9694 -1.8697 0.0737 27 8 6.1725 -1.1101 0.7139 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3603 2.1306 0.1106 32 1 2.6046 1.4122 -0.9401 33 1 1.5164 1.4486 2.5779 34 1 3.1634 1.1942 3.2032 35 1 1.6358 3.5075 5.6283 36 1 6.4252 1.7304 -0.3085 37 1 8.1247 2.1849 -2.1339 38 1 5.8480 3.6877 -3.6815 39 1 7.5669 4.3014 -3.4167 40 1 8.4789 2.2775 -4.6440 41 1 6.7603 1.6633 -4.9091 42 1 3.1769 -1.7288 -0.6613 43 1 4.2659 -2.9184 0.0918 44 1 3.6070 -1.5776 1.0592 45 1 6.4992 -2.0095 0.8533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:26 Heat of formation + Delta-G solvation = -64.811700 kcal Electronic energy + Delta-G solvation = -27141.525095 eV Core-core repulsion = 23354.139107 eV Total energy + Delta-G solvation = -3787.385988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44439 -39.14047 -37.08355 -36.15583 -35.70732 -34.26902 -33.17140 -32.07497 -31.24023 -28.30614 -26.93247 -25.46413 -24.00334 -23.22383 -22.57809 -21.44242 -20.16573 -19.81535 -18.71524 -17.71968 -17.04944 -16.57617 -16.46339 -15.88234 -15.50247 -15.24087 -14.79643 -14.69118 -14.53899 -14.14823 -13.97451 -13.74812 -12.94513 -12.91242 -12.66219 -12.50862 -12.23519 -12.12304 -11.94067 -11.72015 -11.61583 -11.25442 -11.23161 -10.97911 -10.80907 -10.78597 -10.65962 -10.60845 -10.19282 -10.02368 -9.83664 -9.64895 -9.25533 -9.10267 -8.72688 -8.43612 -7.70908 -6.04559 -4.08983 2.44743 2.45782 2.82026 3.29608 3.36350 3.40577 3.55157 3.72469 3.91704 4.29255 4.44809 4.57069 4.65885 4.73127 4.85083 4.93478 5.02813 5.10950 5.24839 5.29578 5.30787 5.35068 5.43536 5.44040 5.60084 5.65002 5.78726 5.79212 5.84764 5.95196 6.02993 6.14703 6.23233 6.40664 6.80700 6.91056 7.05920 7.41553 7.50152 7.56395 7.77659 7.91577 8.19915 8.22744 8.35586 8.88162 9.03889 9.55793 11.03581 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.004861 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.147720 B = 5758.589040 C = 6818.342485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.180 4.180 3 C 0.130 3.870 4 N -0.589 5.589 5 C 0.250 3.750 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.505 3.495 15 O -0.507 6.507 16 C 0.126 3.874 17 H 0.116 0.884 18 N -0.699 5.699 19 C 0.545 3.455 20 O -0.549 6.549 21 C -0.194 4.194 22 C -0.152 4.152 23 C -0.148 4.148 24 C 0.102 3.898 25 H 0.063 0.937 26 C -0.194 4.194 27 O -0.541 6.541 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.412 0.588 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -6.612 -15.629 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.199 4.199 3 C 0.006 3.994 4 N -0.321 5.321 5 C 0.131 3.869 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.289 3.711 15 O -0.381 6.381 16 C 0.017 3.983 17 H 0.133 0.867 18 N -0.351 5.351 19 C 0.332 3.668 20 O -0.427 6.427 21 C -0.215 4.215 22 C -0.189 4.189 23 C -0.185 4.185 24 C 0.042 3.958 25 H 0.081 0.919 26 C -0.251 4.251 27 O -0.345 6.345 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.727 -6.285 -15.408 17.598 hybrid contribution 0.284 0.533 0.571 0.832 sum 6.011 -5.751 -14.836 17.010 Atomic orbital electron populations 1.23820 0.95820 1.01775 1.00284 1.23716 0.96643 0.99395 1.00175 1.20693 0.92907 0.95716 0.90041 1.48253 1.07394 1.64791 1.11698 1.19272 0.95374 0.95452 0.76830 1.21408 1.42563 0.92643 0.99728 0.92513 1.24920 0.95102 0.98413 0.95583 1.69938 1.43215 1.35577 1.04602 0.86511 0.78372 0.85230 0.77389 1.20674 1.21097 1.19927 1.19940 0.83195 0.79241 0.88708 1.90716 1.51118 1.52205 1.44067 1.21332 0.90614 0.89998 0.96308 0.86660 1.45656 1.31828 1.50430 1.07161 1.19683 0.84706 0.80588 0.81836 1.90670 1.49194 1.46912 1.55906 1.22168 0.99741 1.02515 0.97047 1.22949 1.02980 0.91152 1.01844 1.22941 1.02818 1.00938 0.91807 1.21948 0.89019 0.93641 0.91241 0.91926 1.22728 0.98976 0.99994 1.03450 1.86792 1.57257 1.32662 1.57771 0.88717 0.88320 0.86884 0.89351 0.90611 0.94839 0.93965 0.92744 0.75183 0.85706 0.88125 0.87724 0.88020 0.87428 0.90877 0.91791 0.90839 0.78439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 14.32 29.01 0.42 -1.96 16 2 C -0.18 -2.63 9.84 -36.03 -0.35 -2.98 16 3 C 0.13 2.19 5.56 -5.19 -0.03 2.16 16 4 N -0.59 -12.36 2.44 -176.44 -0.43 -12.79 16 5 C 0.25 6.47 5.14 -5.20 -0.03 6.44 16 6 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.51 10.42 5.64 -10.98 -0.06 10.36 16 15 O -0.51 -12.54 15.25 -12.63 -0.19 -12.73 16 16 C 0.13 2.06 1.92 -69.08 -0.13 1.93 16 17 H 0.12 1.83 4.78 -51.93 -0.25 1.58 16 18 N -0.70 -10.70 5.02 -54.93 -0.28 -10.97 16 19 C 0.55 7.80 7.58 -10.99 -0.08 7.71 16 20 O -0.55 -9.10 15.92 5.55 0.09 -9.01 16 21 C -0.19 -2.10 6.19 -91.77 -0.57 -2.67 16 22 C -0.15 -1.44 10.23 -26.73 -0.27 -1.71 16 23 C -0.15 -1.37 10.04 -26.73 -0.27 -1.64 16 24 C 0.10 1.47 3.46 -26.74 -0.09 1.37 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 C -0.19 -2.44 8.18 37.16 0.30 -2.14 16 27 O -0.54 -8.24 11.89 -53.42 -0.64 -8.87 16 28 H 0.09 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 30 H 0.11 1.54 4.31 -52.49 -0.23 1.31 16 31 H 0.09 1.53 7.77 -51.93 -0.40 1.13 16 32 H 0.08 1.16 5.74 -51.93 -0.30 0.86 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.41 6.36 8.37 -40.82 -0.34 6.02 16 37 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 42 H 0.07 0.84 6.24 -51.93 -0.32 0.52 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.11 7.33 -51.93 -0.38 0.73 16 45 H 0.37 3.86 9.08 45.56 0.41 4.27 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -34.72 375.36 -7.60 -42.32 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.93 Total: 11.89 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.59 Total: 3.44 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.03 Total: -49.51 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.74 Total: -30.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.72 -7.60 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.491 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds