Wall clock time and date at job start Fri Apr 10 2020 18:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99691 * 2 1 4 4 N 1.46501 * 109.47384 * 125.81903 * 3 2 1 5 5 C 1.46492 * 120.00081 * 274.34666 * 4 3 2 6 6 C 1.50693 * 109.47449 * 274.96681 * 5 4 3 7 7 H 1.08002 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00513 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99650 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46915 * 60.00620 * 10 8 6 12 12 H 1.48502 * 109.47253 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47332 * 300.00351 * 10 8 6 14 14 C 1.34779 * 119.99708 * 94.34054 * 4 3 2 15 15 O 1.21280 * 120.00000 * 5.94404 * 14 4 3 16 16 C 1.50699 * 119.99916 * 185.93219 * 14 4 3 17 17 H 1.09004 * 109.46617 * 39.27307 * 16 14 4 18 18 N 1.46497 * 109.47013 * 159.27108 * 16 14 4 19 19 C 1.34780 * 120.00023 * 204.99855 * 18 16 14 20 20 O 1.21280 * 119.99956 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00180 * 179.97438 * 19 18 16 22 22 C 1.52999 * 117.50508 * 248.75559 * 21 19 18 23 23 C 1.52996 * 117.50428 * 180.08950 * 21 19 18 24 24 C 1.52997 * 109.47481 * 279.27585 * 16 14 4 25 25 H 1.09000 * 109.47572 * 58.73588 * 24 16 14 26 26 C 1.52996 * 109.47564 * 178.74234 * 24 16 14 27 27 O 1.42898 * 109.47057 * 298.74265 * 24 16 14 28 28 H 1.07997 * 120.00276 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99925 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00276 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.47292 * 5.81988 * 3 2 1 32 32 H 1.08998 * 109.46943 * 245.82217 * 3 2 1 33 33 H 1.09003 * 109.47539 * 34.96819 * 5 4 3 34 34 H 1.09004 * 109.47005 * 154.96642 * 5 4 3 35 35 H 0.97003 * 119.99957 * 180.02562 * 9 8 6 36 36 H 0.96995 * 119.99901 * 25.00558 * 18 16 14 37 37 H 1.09002 * 115.54906 * 34.42164 * 21 19 18 38 38 H 1.09007 * 117.49533 * 359.97438 * 22 21 19 39 39 H 1.08991 * 117.50457 * 145.02041 * 22 21 19 40 40 H 1.08997 * 117.50436 * 214.98328 * 23 21 19 41 41 H 1.09002 * 117.49696 * 359.97438 * 23 21 19 42 42 H 1.08998 * 109.47091 * 299.99950 * 26 24 16 43 43 H 1.09006 * 109.47294 * 59.99555 * 26 24 16 44 44 H 1.08996 * 109.47439 * 179.97438 * 26 24 16 45 45 H 0.96697 * 114.00566 * 180.02562 * 27 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0077 1.3240 1.1200 5 6 2.5623 1.7583 2.4462 6 6 2.6479 3.2600 2.5381 7 1 2.9986 3.8337 1.6928 8 6 2.2776 3.9019 3.7008 9 7 1.8502 3.2036 4.7298 10 14 2.3844 5.7634 3.8147 11 1 1.5160 6.3735 2.7760 12 1 1.9317 6.2039 5.1587 13 1 3.7896 6.1927 3.5998 14 6 4.2861 0.9416 0.9301 15 8 4.6828 0.6853 -0.1870 16 6 5.2225 0.8326 2.1058 17 1 4.6883 0.4122 2.9579 18 7 6.3466 -0.0391 1.7555 19 6 7.0220 -0.6896 2.7236 20 8 6.6989 -0.5536 3.8847 21 6 8.1779 -1.5868 2.3634 22 6 7.9936 -3.0922 2.5653 23 6 8.9028 -2.2989 3.5072 24 6 5.7488 2.2225 2.4691 25 1 4.9109 2.8774 2.7080 26 6 6.6750 2.1161 3.6823 27 8 6.4740 2.7616 1.3621 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3597 2.1310 0.1042 32 1 2.6096 1.4093 -0.9375 33 1 1.5311 1.4429 2.6047 34 1 3.2004 1.3108 3.2084 35 1 1.5893 3.6552 5.5477 36 1 6.6048 -0.1481 0.8270 37 1 8.7770 -1.2629 1.5123 38 1 7.0362 -3.4336 2.9591 39 1 8.4716 -3.7585 1.8474 40 1 9.9786 -2.4437 3.4085 41 1 8.5439 -2.1181 4.5204 42 1 6.1219 1.7049 4.5267 43 1 7.5130 1.4612 3.4433 44 1 7.0503 3.1062 3.9408 45 1 6.8378 3.6432 1.5220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359435810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:29 Heat of formation + Delta-G solvation = -93.033621 kcal Electronic energy + Delta-G solvation = -27405.854195 eV Core-core repulsion = 23617.244413 eV Total energy + Delta-G solvation = -3788.609783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79918 -40.49208 -38.35419 -37.27553 -36.96131 -35.45359 -35.06126 -33.95354 -31.92607 -29.51293 -29.27065 -26.78874 -25.17487 -24.68669 -23.29816 -22.65136 -21.23878 -21.06113 -20.11521 -18.87481 -18.56751 -18.40250 -17.57216 -17.39914 -16.83091 -16.44224 -16.32150 -16.05105 -15.94769 -15.40927 -15.11345 -14.84895 -14.48330 -14.37496 -14.19094 -13.77255 -13.56301 -13.34026 -13.19496 -13.00031 -12.98634 -12.77062 -12.58956 -12.42137 -12.28019 -12.21019 -12.13055 -11.71601 -11.50721 -11.43631 -11.20310 -10.92674 -10.73835 -10.59372 -10.31039 -10.07293 -9.56171 -8.21185 -6.34972 1.22816 1.42533 1.43290 1.46592 1.51058 1.58459 1.91118 2.37933 2.53020 2.93904 3.08753 3.23474 3.45828 3.70627 3.85908 3.89834 4.01831 4.05490 4.17374 4.21764 4.27883 4.35212 4.45869 4.52492 4.75236 4.79913 4.83912 4.87276 4.91814 4.99447 5.01575 5.05240 5.13341 5.24888 5.25535 5.34594 5.55550 5.65599 5.71015 5.88190 6.01482 6.45562 6.51982 6.74781 6.82708 7.13041 7.21738 7.35873 8.84491 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.005361 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.411861 B = 5221.762403 C = 6579.528983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.142 3.858 4 N -0.590 5.590 5 C 0.249 3.751 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.028 3.972 9 N -0.915 5.915 10 Si 0.951 3.049 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.520 3.480 15 O -0.573 6.573 16 C 0.148 3.852 17 H 0.099 0.901 18 N -0.694 5.694 19 C 0.536 3.464 20 O -0.574 6.574 21 C -0.202 4.202 22 C -0.142 4.142 23 C -0.143 4.143 24 C 0.090 3.910 25 H 0.085 0.915 26 C -0.156 4.156 27 O -0.568 6.568 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.413 0.587 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -7.350 -5.440 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.554 5.554 10 Si 0.777 3.223 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.192 1.192 14 C 0.308 3.692 15 O -0.455 6.455 16 C 0.039 3.961 17 H 0.117 0.883 18 N -0.346 5.346 19 C 0.325 3.675 20 O -0.454 6.454 21 C -0.223 4.223 22 C -0.179 4.179 23 C -0.180 4.180 24 C 0.029 3.971 25 H 0.103 0.897 26 C -0.214 4.214 27 O -0.376 6.376 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.251 0.749 37 H 0.164 0.836 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.722 -7.921 -5.277 12.910 hybrid contribution -0.193 1.625 0.342 1.672 sum 8.529 -6.296 -4.935 11.694 Atomic orbital electron populations 1.24031 0.95008 1.03108 0.97998 1.23180 0.96816 0.97885 1.02251 1.20524 0.91636 0.96202 0.89686 1.48120 1.08657 1.62787 1.12361 1.19178 0.95334 0.94548 0.78082 1.21474 1.44995 0.92047 0.99361 0.92447 1.25604 0.94253 1.02455 0.95053 1.70009 1.43582 1.37541 1.04225 0.85702 0.79035 0.80343 0.77257 1.19647 1.20990 1.19213 1.20364 0.82766 0.76408 0.89694 1.90546 1.76425 1.53046 1.25441 1.20658 0.87701 0.91576 0.96141 0.88312 1.45590 1.31741 1.45984 1.11330 1.20327 0.83271 0.79372 0.84578 1.90703 1.68892 1.65346 1.20423 1.22220 0.99378 0.95344 1.05382 1.23065 1.01859 0.90037 1.02971 1.23034 0.99795 1.00600 0.94560 1.22237 0.95304 0.93154 0.86361 0.89708 1.22322 0.99719 1.01909 0.97443 1.86455 1.73837 1.37752 1.39526 0.87793 0.86333 0.88177 0.89909 0.90121 0.96005 0.95718 0.92271 0.74942 0.83555 0.89714 0.84750 0.85074 0.89502 0.92930 0.92418 0.91363 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 14.32 67.78 0.97 -3.48 16 2 C -0.18 -5.90 9.85 25.64 0.25 -5.65 16 3 C 0.14 5.28 5.95 85.63 0.51 5.79 16 4 N -0.59 -25.11 2.44 -830.52 -2.03 -27.14 16 5 C 0.25 11.91 4.75 85.63 0.41 12.32 16 6 C -0.54 -27.11 7.14 25.60 0.18 -26.93 16 7 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 8 C 0.03 1.41 5.46 84.66 0.46 1.88 16 9 N -0.92 -49.66 13.29 21.45 0.28 -49.38 16 10 Si 0.95 40.49 29.54 68.60 2.03 42.51 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 C 0.52 22.07 6.59 87.66 0.58 22.65 16 15 O -0.57 -25.27 15.43 -3.03 -0.05 -25.32 16 16 C 0.15 5.92 1.65 44.24 0.07 5.99 16 17 H 0.10 4.38 5.92 -2.38 -0.01 4.37 16 18 N -0.69 -23.62 4.79 -446.11 -2.14 -25.76 16 19 C 0.54 17.26 6.02 87.65 0.53 17.79 16 20 O -0.57 -22.40 13.38 -3.03 -0.04 -22.44 16 21 C -0.20 -4.51 6.19 -11.54 -0.07 -4.58 16 22 C -0.14 -2.57 10.24 30.62 0.31 -2.26 16 23 C -0.14 -2.72 10.05 30.62 0.31 -2.41 16 24 C 0.09 3.47 3.24 30.59 0.10 3.57 16 25 H 0.09 3.77 5.14 -2.39 -0.01 3.76 16 26 C -0.16 -5.63 8.07 71.98 0.58 -5.04 16 27 O -0.57 -20.12 12.81 -148.98 -1.91 -22.03 16 28 H 0.10 2.71 7.84 -2.91 -0.02 2.69 16 29 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.10 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.08 3.05 7.76 -2.38 -0.02 3.04 16 32 H 0.08 3.03 7.23 -2.39 -0.02 3.01 16 33 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 34 H 0.02 1.27 5.69 -2.38 -0.01 1.25 16 35 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.41 13.30 7.74 -92.71 -0.72 12.59 16 37 H 0.15 2.54 8.14 -2.39 -0.02 2.53 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 42 H 0.05 2.12 7.61 -2.39 -0.02 2.10 16 43 H 0.06 2.03 5.74 -2.38 -0.01 2.02 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.39 10.45 9.08 -74.06 -0.67 9.78 16 Total: -1.00 -63.78 371.01 0.97 -62.81 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -0.38 Total: 47.09 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 5.19 Total: 19.64 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -3.88 Total: -102.28 kcal Atomic # 8 Polarization: -67.79 SS G_CDS: -2.00 Total: -69.78 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -63.78 0.97 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.220 kcal (2) G-P(sol) polarization free energy of solvation -63.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds