Wall clock time and date at job start Fri Apr 10 2020 18:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.62694 * 359.97438 * 5 3 2 7 7 C 1.53197 * 108.77484 * 126.37299 * 6 5 3 8 8 C 1.53038 * 109.30963 * 54.63204 * 7 6 5 9 9 C 1.53037 * 109.53983 * 298.63302 * 8 7 6 10 10 H 1.08998 * 109.50110 * 301.38515 * 9 8 7 11 11 C 1.50702 * 109.49537 * 181.31732 * 9 8 7 12 12 O 1.21273 * 120.00424 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99778 * 180.02562 * 11 9 8 14 14 C 1.47068 * 136.05776 * 359.62128 * 13 11 9 15 15 C 1.53232 * 88.08285 * 207.21024 * 14 13 11 16 16 O 1.42901 * 114.01907 * 87.71739 * 15 14 13 17 17 C 1.50702 * 114.50717 * 220.45990 * 15 14 13 18 18 H 1.08003 * 120.00239 * 93.84427 * 17 15 14 19 19 C 1.37882 * 120.00116 * 273.84757 * 17 15 14 20 20 N 1.31516 * 119.99495 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00387 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47299 * 89.99705 * 21 19 17 23 23 H 1.48495 * 109.47268 * 210.00181 * 21 19 17 24 24 H 1.48508 * 109.46865 * 330.00178 * 21 19 17 25 25 C 1.47066 * 136.05611 * 180.02562 * 13 11 9 26 26 C 1.46922 * 120.63244 * 179.72194 * 5 3 2 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.09001 * 109.59151 * 246.15628 * 6 5 3 33 33 H 1.09003 * 109.59195 * 6.58462 * 6 5 3 34 34 H 1.09000 * 109.49544 * 174.58699 * 7 6 5 35 35 H 1.08997 * 109.49415 * 294.65077 * 7 6 5 36 36 H 1.09001 * 109.45987 * 58.66049 * 8 7 6 37 37 H 1.09004 * 109.45848 * 178.62706 * 8 7 6 38 38 H 1.09001 * 113.46831 * 321.94693 * 14 13 11 39 39 H 1.09003 * 113.46241 * 92.38677 * 14 13 11 40 40 H 0.96708 * 113.99615 * 86.38881 * 16 15 14 41 41 H 0.97004 * 119.99844 * 180.02562 * 20 19 17 42 42 H 1.09008 * 113.46405 * 267.61572 * 25 13 11 43 43 H 1.08999 * 113.47023 * 38.00122 * 25 13 11 44 44 H 1.09003 * 109.58475 * 353.41435 * 26 5 3 45 45 H 1.08996 * 109.58975 * 113.84341 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3244 0.5610 -0.0005 7 6 5.2961 0.7556 -1.1688 8 6 5.9304 2.1451 -1.0734 9 6 4.8391 3.2136 -1.1698 10 1 4.3026 3.1019 -2.1120 11 6 5.4680 4.5818 -1.1082 12 8 6.6707 4.6920 -0.9986 13 7 4.6937 5.6830 -1.1750 14 6 3.2558 5.9597 -1.3116 15 6 3.6273 7.2926 -1.9700 16 8 3.8187 7.2097 -3.3837 17 6 2.7667 8.4572 -1.5527 18 1 3.0789 9.0952 -0.7391 19 6 1.5807 8.7083 -2.2095 20 7 1.2008 7.9317 -3.2005 21 14 0.5136 10.1515 -1.6919 22 1 0.9075 11.3593 -2.4608 23 1 -0.9118 9.8353 -1.9626 24 1 0.6970 10.4071 -0.2405 25 6 4.9157 7.1366 -1.1507 26 6 3.8623 3.0469 -0.0067 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.8778 0.5594 0.9385 33 1 3.7968 -0.3856 -0.1178 34 1 6.0761 -0.0044 -1.1236 35 1 4.7550 0.6661 -2.1107 36 1 6.4506 2.2421 -0.1204 37 1 6.6405 2.2769 -1.8898 38 1 2.7435 5.2725 -1.9850 39 1 2.7435 6.0753 -0.3565 40 1 3.0051 7.3084 -3.8971 41 1 0.3666 8.1085 -3.6629 42 1 4.8502 7.5689 -0.1521 43 1 5.8123 7.4478 -1.6867 44 1 3.0298 3.7401 -0.1280 45 1 4.3772 3.2518 0.9319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408157157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:40 Heat of formation + Delta-G solvation = -90.949636 kcal Electronic energy + Delta-G solvation = -27034.967092 eV Core-core repulsion = 23246.447678 eV Total energy + Delta-G solvation = -3788.519414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53430 -39.50192 -37.94947 -36.75990 -34.01299 -33.36270 -32.53358 -32.16184 -31.45700 -28.56444 -26.08148 -25.64096 -25.10042 -24.12900 -23.20170 -21.28335 -19.85571 -18.97651 -18.25560 -17.48201 -17.19170 -16.28403 -16.03963 -15.85687 -15.36237 -15.01965 -14.91935 -14.33445 -14.19640 -13.94924 -13.88268 -13.44621 -13.22259 -12.89720 -12.72630 -12.54658 -12.50842 -12.23488 -11.89514 -11.87621 -11.53568 -11.47333 -11.32052 -11.12354 -11.04882 -10.99637 -10.91837 -10.62940 -10.44743 -10.23218 -9.86305 -9.57902 -9.16927 -8.76253 -8.70976 -8.37016 -7.84500 -6.37157 -4.47499 2.58416 2.81244 3.17794 3.20013 3.25733 3.28441 3.54724 4.21294 4.34743 4.55367 4.75166 4.76238 4.84569 4.87066 4.91041 4.97707 5.05885 5.15363 5.32191 5.33182 5.50434 5.59557 5.60631 5.64916 5.70844 5.78583 5.81921 5.88871 5.97621 6.09797 6.13342 6.19586 6.28591 6.36567 6.43206 6.55228 6.65170 6.74052 7.13247 7.31290 7.66025 7.83007 8.14532 8.49518 8.56158 8.73526 9.23826 9.50692 10.69755 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.004424 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.400406 B = 6328.250041 C = 7942.095054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.509 3.491 4 O -0.530 6.530 5 N -0.614 5.614 6 C 0.105 3.895 7 C -0.136 4.136 8 C -0.098 4.098 9 C -0.114 4.114 10 H 0.097 0.903 11 C 0.542 3.458 12 O -0.563 6.563 13 N -0.632 5.632 14 C 0.073 3.927 15 C 0.240 3.760 16 O -0.573 6.573 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.106 3.894 26 C 0.121 3.879 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.394 0.606 41 H 0.274 0.726 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -17.262 5.540 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.297 3.703 4 O -0.406 6.406 5 N -0.348 5.348 6 C -0.018 4.018 7 C -0.174 4.174 8 C -0.136 4.136 9 C -0.136 4.136 10 H 0.115 0.885 11 C 0.330 3.670 12 O -0.443 6.443 13 N -0.364 5.364 14 C -0.050 4.050 15 C 0.198 3.802 16 O -0.386 6.386 17 C -0.573 4.573 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.016 4.016 26 C -0.002 4.002 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.462 -17.007 5.650 18.089 hybrid contribution -1.118 0.656 0.021 1.297 sum 1.344 -16.351 5.672 17.359 Atomic orbital electron populations 1.21548 0.92967 1.01427 1.03645 1.21651 0.98655 0.93873 1.03950 1.20839 0.81553 0.92012 0.75871 1.90757 1.54551 1.46466 1.48822 1.48146 1.05701 1.07040 1.73933 1.21802 0.91173 0.89588 0.99196 1.21963 0.98815 0.97889 0.98714 1.21319 0.96597 0.91953 1.03745 1.21500 0.97779 0.93198 1.01122 0.88527 1.19732 0.86184 0.84503 0.76572 1.90628 1.14445 1.86831 1.52396 1.49758 1.11015 1.06169 1.69498 1.24188 0.79901 1.00116 1.00788 1.19491 0.89698 0.90610 0.80367 1.86037 1.39899 1.95342 1.17301 1.21417 1.04662 1.12898 1.18297 0.90926 1.25076 0.97212 0.96455 0.94242 1.69260 1.24043 1.38143 1.22300 0.86311 0.79121 0.81744 0.79242 1.20252 1.20873 1.19506 1.23336 1.00511 0.77842 0.99897 1.21458 0.98092 0.83496 0.97156 0.91933 0.91780 0.92195 0.89105 0.88995 0.91115 0.89567 0.90225 0.91291 0.91040 0.90687 0.91716 0.89958 0.74955 0.91558 0.89670 0.91566 0.87810 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.14 -1.24 4.77 -27.88 -0.13 -1.37 16 3 C 0.51 6.84 7.70 -10.98 -0.08 6.76 16 4 O -0.53 -9.63 15.39 5.56 0.09 -9.54 16 5 N -0.61 -7.58 2.98 -173.01 -0.52 -8.10 16 6 C 0.11 0.88 6.34 -3.71 -0.02 0.86 16 7 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 8 C -0.10 -1.25 4.46 -26.69 -0.12 -1.37 16 9 C -0.11 -1.79 2.54 -91.85 -0.23 -2.03 16 10 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 11 C 0.54 10.89 7.41 -10.98 -0.08 10.81 16 12 O -0.56 -12.67 16.76 5.56 0.09 -12.58 16 13 N -0.63 -13.50 3.64 -185.38 -0.67 -14.17 16 14 C 0.07 1.62 6.22 -8.64 -0.05 1.57 16 15 C 0.24 5.88 1.57 -91.40 -0.14 5.74 16 16 O -0.57 -15.06 13.53 -35.23 -0.48 -15.54 16 17 C -0.53 -13.63 8.70 -34.44 -0.30 -13.93 16 18 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 19 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 20 N -0.90 -23.31 11.01 55.43 0.61 -22.70 16 21 Si 0.91 19.85 29.54 -169.99 -5.02 14.82 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C 0.11 2.36 8.03 -8.51 -0.07 2.29 16 26 C 0.12 1.82 5.51 -3.91 -0.02 1.79 16 27 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.59 7.94 -51.93 -0.41 0.17 16 31 H 0.09 0.63 7.69 -51.93 -0.40 0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.49 5.93 -51.93 -0.31 0.19 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.78 8.10 -51.93 -0.42 1.36 16 40 H 0.39 10.49 6.32 45.56 0.29 10.78 16 41 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.09 1.73 8.10 -51.92 -0.42 1.31 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.10 1.84 5.44 -51.93 -0.28 1.56 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -31.12 361.28 -8.20 -39.31 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.56 Total: 12.51 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -1.18 Total: 10.54 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.58 Total: -44.97 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.30 Total: -37.66 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.12 -8.20 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.635 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds