Wall clock time and date at job start Fri Apr 10 2020 18:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47400 * 2 1 4 4 O 1.21281 * 119.99835 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00194 * 180.02562 * 3 2 1 6 6 C 1.46934 * 120.62939 * 353.89795 * 5 3 2 7 7 C 1.53197 * 108.77012 * 126.37360 * 6 5 3 8 8 C 1.53036 * 109.31373 * 54.63912 * 7 6 5 9 9 C 1.53050 * 109.53637 * 298.62891 * 8 7 6 10 10 C 1.46926 * 120.62975 * 173.62449 * 5 3 2 11 11 H 1.09001 * 109.58600 * 113.84376 * 10 5 3 12 12 C 1.50699 * 109.58966 * 353.41603 * 10 5 3 13 13 O 1.21283 * 119.99684 * 298.68610 * 12 10 5 14 14 N 1.34775 * 120.00293 * 118.68156 * 12 10 5 15 15 C 1.47073 * 136.05281 * 359.63529 * 14 12 10 16 16 C 1.53242 * 88.07645 * 207.19991 * 15 14 12 17 17 O 1.42894 * 114.19584 * 87.73168 * 16 15 14 18 18 C 1.50708 * 114.32164 * 220.46890 * 16 15 14 19 19 H 1.08002 * 119.99674 * 93.76403 * 18 16 15 20 20 C 1.37872 * 119.99846 * 273.76051 * 18 16 15 21 21 N 1.31518 * 120.00242 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99617 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47516 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47325 * 120.00208 * 22 20 18 25 25 H 1.48507 * 109.47341 * 239.99830 * 22 20 18 26 26 C 1.47056 * 136.05823 * 180.02562 * 14 12 10 27 27 H 1.08999 * 109.47114 * 60.00208 * 1 2 3 28 28 H 1.08997 * 109.47288 * 300.00571 * 1 2 3 29 29 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47081 * 119.99812 * 2 1 3 31 31 H 1.08997 * 109.47288 * 239.99429 * 2 1 3 32 32 H 1.09000 * 109.58527 * 246.15666 * 6 5 3 33 33 H 1.08994 * 109.58590 * 6.58739 * 6 5 3 34 34 H 1.08998 * 109.49130 * 174.58632 * 7 6 5 35 35 H 1.09004 * 109.49603 * 294.67919 * 7 6 5 36 36 H 1.08994 * 109.46669 * 58.65384 * 8 7 6 37 37 H 1.09002 * 109.46217 * 178.62940 * 8 7 6 38 38 H 1.08999 * 109.49548 * 181.31747 * 9 8 7 39 39 H 1.08998 * 109.49651 * 301.38241 * 9 8 7 40 40 H 1.08999 * 113.46607 * 321.92887 * 15 14 12 41 41 H 1.08999 * 113.46558 * 92.37734 * 15 14 12 42 42 H 0.96698 * 114.00239 * 86.30234 * 17 16 15 43 43 H 0.97002 * 119.99650 * 179.97438 * 21 20 18 44 44 H 1.09011 * 113.47013 * 267.62439 * 26 14 12 45 45 H 1.09001 * 113.46946 * 38.00920 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3231 0.5678 0.1333 7 6 5.3174 0.6408 -1.0299 8 6 5.9513 2.0332 -1.0673 9 6 4.8630 3.0850 -1.2954 10 6 3.8637 3.0391 -0.1409 11 1 4.3606 3.3414 0.7810 12 6 2.7174 3.9736 -0.4302 13 8 2.0525 3.8253 -1.4336 14 7 2.4309 4.9740 0.4263 15 6 2.9730 5.4628 1.7031 16 6 1.5788 6.0106 2.0261 17 8 0.7153 5.0717 2.6701 18 6 1.5818 7.3662 2.6848 19 1 1.4874 8.2586 2.0839 20 6 1.7051 7.4669 4.0543 21 7 1.8205 6.3801 4.7858 22 14 1.7081 9.1470 4.8706 23 1 1.5663 10.2012 3.8343 24 1 0.5743 9.2354 5.8257 25 1 2.9867 9.3403 5.6009 26 6 1.4344 6.0531 0.4988 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 4.8582 0.6645 1.0780 33 1 3.7970 -0.3863 0.1049 34 1 6.0957 -0.1095 -0.8907 35 1 4.7944 0.4537 -1.9678 36 1 6.4530 2.2295 -0.1198 37 1 6.6771 2.0802 -1.8791 38 1 5.3180 4.0742 -1.3453 39 1 4.3449 2.8752 -2.2311 40 1 3.2902 4.6644 2.3740 41 1 3.7281 6.2399 1.5850 42 1 0.8085 5.0472 3.6323 43 1 1.9076 6.4511 5.7493 44 1 1.7752 6.9893 0.0564 45 1 0.4464 5.7560 0.1470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408300321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:47 Heat of formation + Delta-G solvation = -76.293525 kcal Electronic energy + Delta-G solvation = -27790.818324 eV Core-core repulsion = 24002.934446 eV Total energy + Delta-G solvation = -3787.883878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64056 -38.93639 -37.40953 -36.74171 -33.83048 -33.11199 -32.44300 -32.09295 -31.26789 -28.52944 -26.19379 -25.15174 -24.93716 -24.16343 -23.16592 -20.72938 -20.24999 -18.91422 -18.05944 -17.49658 -16.74247 -16.24872 -15.83611 -15.42440 -15.18975 -14.83188 -14.37214 -14.33557 -14.18307 -13.92131 -13.65578 -13.53698 -13.26940 -12.72954 -12.57480 -12.35678 -12.11091 -12.00096 -11.77573 -11.57583 -11.49318 -11.45780 -11.17261 -11.05166 -11.02946 -10.97470 -10.84927 -10.76879 -10.40589 -10.13307 -9.42824 -9.18390 -8.94030 -8.66411 -8.49064 -8.21354 -7.57601 -6.32920 -4.43269 2.82003 2.97945 3.16696 3.25984 3.30294 3.70121 3.75995 4.23065 4.57027 4.61820 4.74198 4.84311 4.90588 5.01290 5.09471 5.15722 5.18435 5.18859 5.39317 5.40427 5.58072 5.63353 5.73890 5.75463 5.75937 5.85969 5.87881 5.94010 6.05164 6.08183 6.24043 6.35289 6.37885 6.53848 6.62112 6.64048 6.84194 6.85477 7.23796 7.54348 7.70421 7.91353 8.48924 8.60298 8.82345 9.10336 9.28291 9.63819 10.73251 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.004315 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.284082 B = 6487.497658 C = 7071.107470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.497 3.503 4 O -0.479 6.479 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.136 4.136 8 C -0.117 4.117 9 C -0.121 4.121 10 C 0.135 3.865 11 H 0.082 0.918 12 C 0.561 3.439 13 O -0.552 6.552 14 N -0.630 5.630 15 C 0.072 3.928 16 C 0.241 3.759 17 O -0.566 6.566 18 C -0.531 4.531 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.899 5.899 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.112 3.888 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.390 0.610 43 H 0.272 0.728 44 H 0.079 0.921 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -12.880 -6.605 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.285 3.715 4 O -0.350 6.350 5 N -0.348 5.348 6 C -0.012 4.012 7 C -0.175 4.175 8 C -0.154 4.154 9 C -0.160 4.160 10 C 0.029 3.971 11 H 0.100 0.900 12 C 0.350 3.650 13 O -0.431 6.431 14 N -0.364 5.364 15 C -0.052 4.052 16 C 0.199 3.801 17 O -0.378 6.378 18 C -0.569 4.569 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.010 4.010 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.245 0.755 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.063 -12.805 -7.692 16.975 hybrid contribution 0.583 0.824 1.189 1.560 sum 8.646 -11.980 -6.502 16.142 Atomic orbital electron populations 1.21531 0.93004 1.01101 1.03831 1.21588 0.98663 0.93834 1.03428 1.20857 0.81682 0.92180 0.76796 1.90887 1.53791 1.44673 1.45644 1.47973 1.05732 1.06125 1.74993 1.21726 0.90991 0.89899 0.98591 1.21945 0.98642 0.97693 0.99183 1.21503 0.97389 0.94234 1.02323 1.21737 0.95849 0.99965 0.98444 1.20946 0.94221 0.82432 0.99548 0.90024 1.19048 0.83679 0.80028 0.82247 1.90601 1.51154 1.72613 1.28729 1.49439 1.34928 1.28601 1.23450 1.24085 1.02101 0.96838 0.82137 1.19454 0.85029 0.87750 0.87823 1.86112 1.62756 1.61675 1.27257 1.21522 1.50888 0.92088 0.92393 0.90981 1.25077 0.93189 0.97700 0.97148 1.69303 1.50047 1.27942 1.06715 0.86285 0.77782 0.83158 0.79302 1.19422 1.20656 1.20736 1.23192 0.92166 0.88046 0.97612 0.91915 0.91708 0.92415 0.89380 0.89434 0.91247 0.89503 0.90650 0.91316 0.91526 0.91309 0.90555 0.90434 0.92387 0.90481 0.75450 0.91782 0.90275 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 37.15 0.34 -1.47 16 2 C -0.14 -1.67 4.78 -27.89 -0.13 -1.80 16 3 C 0.50 8.82 7.38 -10.99 -0.08 8.74 16 4 O -0.48 -11.25 11.75 -19.11 -0.22 -11.47 16 5 N -0.61 -9.33 2.98 -166.78 -0.50 -9.83 16 6 C 0.11 1.10 6.35 -3.70 -0.02 1.08 16 7 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 8 C -0.12 -1.12 5.89 -26.69 -0.16 -1.28 16 9 C -0.12 -1.64 5.30 -26.83 -0.14 -1.78 16 10 C 0.14 2.30 3.26 -68.97 -0.22 2.08 16 11 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 12 C 0.56 12.50 4.62 -10.99 -0.05 12.45 16 13 O -0.55 -14.01 15.37 -19.11 -0.29 -14.30 16 14 N -0.63 -14.68 3.69 -185.38 -0.68 -15.36 16 15 C 0.07 1.65 7.40 -8.63 -0.06 1.58 16 16 C 0.24 6.19 1.57 -91.40 -0.14 6.05 16 17 O -0.57 -15.85 13.53 -35.23 -0.48 -16.32 16 18 C -0.53 -13.83 8.69 -34.44 -0.30 -14.13 16 19 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 21 N -0.90 -23.50 11.01 55.43 0.61 -22.89 16 22 Si 0.91 19.85 29.54 -169.99 -5.02 14.82 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.11 2.71 8.03 -8.52 -0.07 2.64 16 27 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.87 7.69 -51.92 -0.40 0.47 16 31 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.67 5.93 -51.93 -0.31 0.36 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 40 H 0.06 1.34 7.99 -51.93 -0.42 0.93 16 41 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 42 H 0.39 10.89 6.32 45.56 0.29 11.17 16 43 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.08 1.73 8.10 -51.92 -0.42 1.31 16 45 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -33.93 357.95 -9.15 -43.07 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.65 Total: 12.34 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -1.30 Total: 14.55 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.57 Total: -48.08 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.00 Total: -42.10 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.93 -9.15 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408300321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.219 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds