Wall clock time and date at job start Fri Apr 10 2020 18:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48497 * 109.46839 * 239.99628 * 3 2 1 5 5 H 1.48500 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99906 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 197.37018 * 7 2 1 9 9 N 1.36931 * 119.99891 * 17.36942 * 7 2 1 10 10 C 1.46935 * 120.63006 * 207.68249 * 9 7 2 11 11 C 1.53185 * 108.77643 * 233.58574 * 10 9 7 12 12 C 1.53037 * 109.31470 * 305.36754 * 11 10 9 13 13 C 1.53040 * 109.53016 * 61.37244 * 12 11 10 14 14 H 1.08997 * 109.49738 * 58.57791 * 13 12 11 15 15 N 1.46497 * 109.50004 * 178.67669 * 13 12 11 16 16 C 1.34774 * 120.00173 * 204.99789 * 15 13 12 17 17 O 1.21291 * 119.99764 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00185 * 180.02562 * 16 15 13 19 19 N 1.46905 * 109.47059 * 180.02562 * 18 16 15 20 20 C 1.47194 * 110.99812 * 169.99842 * 19 18 16 21 21 C 1.52983 * 108.73091 * 54.36711 * 20 19 18 22 22 N 1.46016 * 110.03898 * 50.28685 * 21 20 19 23 23 C 1.33709 * 122.93048 * 341.84108 * 22 21 20 24 24 O 1.21282 * 118.62257 * 181.68225 * 23 22 21 25 25 C 1.46900 * 110.99881 * 292.88748 * 19 18 16 26 26 C 1.46926 * 120.63289 * 27.66355 * 9 7 2 27 27 H 0.96998 * 120.00359 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58209 * 113.79717 * 10 9 7 29 29 H 1.08997 * 109.58595 * 353.38234 * 10 9 7 30 30 H 1.08995 * 109.49620 * 185.41324 * 11 10 9 31 31 H 1.09005 * 109.52354 * 65.33756 * 11 10 9 32 32 H 1.08999 * 109.45832 * 181.38516 * 12 11 10 33 33 H 1.09001 * 109.45903 * 301.35191 * 12 11 10 34 34 H 0.96998 * 119.99824 * 24.99670 * 15 13 12 35 35 H 1.09002 * 109.46961 * 299.99706 * 18 16 15 36 36 H 1.08992 * 109.47261 * 60.00028 * 18 16 15 37 37 H 1.08999 * 109.58753 * 174.13949 * 20 19 18 38 38 H 1.08993 * 109.59296 * 294.58951 * 20 19 18 39 39 H 1.08991 * 109.37924 * 170.46344 * 21 20 19 40 40 H 1.08998 * 109.37430 * 290.23223 * 21 20 19 41 41 H 0.97009 * 118.53058 * 161.86123 * 22 21 20 42 42 H 1.09007 * 109.38414 * 47.08727 * 25 19 18 43 43 H 1.08999 * 109.38645 * 166.77613 * 25 19 18 44 44 H 1.09005 * 109.58272 * 246.19718 * 26 9 7 45 45 H 1.09001 * 109.58488 * 6.62350 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2798 9 7 1.3725 -2.3611 -0.3530 10 6 1.8195 -3.6546 0.1818 11 6 2.0745 -4.6102 -0.9880 12 6 0.8188 -4.6903 -1.8592 13 6 0.5011 -3.3052 -2.4274 14 1 1.3499 -2.9478 -3.0104 15 7 -0.6826 -3.3888 -3.2865 16 6 -0.8686 -2.4835 -4.2675 17 8 -0.0556 -1.5999 -4.4393 18 6 -2.0865 -2.5691 -5.1508 19 7 -2.0563 -1.4776 -6.1336 20 6 -3.0955 -1.6627 -7.1594 21 6 -4.4489 -1.8231 -6.4644 22 7 -4.6461 -0.7460 -5.4985 23 6 -3.6420 0.0011 -5.0278 24 8 -3.8905 0.8556 -4.2037 25 6 -2.2189 -0.1736 -5.4771 26 6 0.2279 -2.3349 -1.2738 27 1 -0.4850 0.8400 -0.0004 28 1 1.0471 -4.0685 0.8301 29 1 2.7402 -3.5171 0.7488 30 1 2.3137 -5.6013 -0.6027 31 1 2.9085 -4.2409 -1.5849 32 1 0.9892 -5.3885 -2.6786 33 1 -0.0204 -5.0365 -1.2557 34 1 -1.3325 -4.0957 -3.1492 35 1 -2.0908 -3.5266 -5.6718 36 1 -2.9851 -2.4837 -4.5399 37 1 -3.1218 -0.7917 -7.8142 38 1 -2.8767 -2.5560 -7.7443 39 1 -5.2440 -1.7910 -7.2092 40 1 -4.4777 -2.7814 -5.9458 41 1 -5.5457 -0.5646 -5.1840 42 1 -1.5573 -0.1187 -4.6126 43 1 -1.9612 0.6195 -6.1790 44 1 -0.6742 -2.6413 -0.7442 45 1 0.0986 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008170435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:26 Heat of formation + Delta-G solvation = -30.732081 kcal Electronic energy + Delta-G solvation = -27208.848324 eV Core-core repulsion = 23455.232890 eV Total energy + Delta-G solvation = -3753.615434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90134 -39.27351 -37.60092 -36.91494 -34.32912 -33.97717 -32.64355 -30.13567 -30.00663 -29.65421 -27.93043 -25.22542 -25.13669 -23.15979 -22.19241 -21.82200 -20.23995 -19.54675 -18.94844 -17.50734 -17.24198 -16.72179 -16.31474 -15.89153 -15.59946 -15.20043 -14.83754 -14.79597 -14.24179 -13.98074 -13.95228 -13.53018 -13.39016 -13.06302 -13.00702 -12.72497 -12.37463 -12.28406 -11.88474 -11.81000 -11.73276 -11.54452 -10.96862 -10.71711 -10.64348 -10.48019 -10.44369 -10.21712 -9.95059 -9.88709 -9.49461 -9.33136 -9.32887 -8.52296 -8.44902 -8.36889 -6.60854 -5.69248 -3.13027 2.55080 2.93952 3.01915 3.29745 3.48348 3.56055 3.56839 3.85349 4.30608 4.58271 4.59803 4.60501 4.78929 4.99020 5.06311 5.17416 5.24772 5.37558 5.41643 5.44253 5.45104 5.57599 5.66543 5.71832 5.82492 6.10496 6.15965 6.35339 6.40295 6.43834 6.51408 6.61890 6.68852 6.72544 6.79808 6.96379 6.99056 7.09981 7.33491 7.76720 7.87716 7.95316 8.08878 8.53472 8.67445 9.28730 9.92732 10.47235 11.38608 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.004737 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.939376 B = 5909.006455 C = 7362.363919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.082 0.918 15 N -0.721 5.721 16 C 0.508 3.492 17 O -0.514 6.514 18 C 0.027 3.973 19 N -0.505 5.505 20 C 0.036 3.964 21 C 0.072 3.928 22 N -0.730 5.730 23 C 0.485 3.515 24 O -0.540 6.540 25 C 0.035 3.965 26 C 0.167 3.833 27 H 0.255 0.745 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.397 0.603 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.015 0.985 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -11.136 -15.009 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.731 3.269 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.101 0.899 15 N -0.373 5.373 16 C 0.293 3.707 17 O -0.388 6.388 18 C -0.104 4.104 19 N -0.228 5.228 20 C -0.092 4.092 21 C -0.055 4.055 22 N -0.384 5.384 23 C 0.271 3.729 24 O -0.415 6.415 25 C -0.095 4.095 26 C 0.040 3.960 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.233 0.767 42 H 0.152 0.848 43 H 0.132 0.868 44 H 0.033 0.967 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.150 -9.903 -14.976 19.717 hybrid contribution -1.307 0.395 0.504 1.455 sum -9.456 -9.508 -14.472 19.729 Atomic orbital electron populations 1.69984 1.05326 1.25832 1.52971 1.25019 0.95231 0.98446 1.00365 0.86395 0.79009 0.83467 0.78063 1.20825 1.21562 1.20940 1.19088 0.92715 0.84841 1.42359 0.91665 1.43950 1.36022 1.01600 1.49504 1.20952 0.97690 0.86920 0.92851 1.22002 0.96990 0.99298 0.98790 1.21669 0.98885 0.96071 0.98708 1.21970 0.87012 0.96823 0.92914 0.89940 1.46045 1.26393 1.31271 1.33566 1.20222 0.87358 0.82343 0.80824 1.90741 1.44833 1.33435 1.69803 1.22131 0.97028 0.96526 0.94732 1.62198 1.46136 1.01271 1.13214 1.22664 0.87261 1.04603 0.94715 1.22135 1.00264 0.90541 0.92519 1.45679 1.10807 1.35928 1.46024 1.21507 0.89376 0.80991 0.81076 1.90806 1.84408 1.34035 1.32219 1.22679 0.91353 0.92311 1.03170 1.21091 0.88669 0.98987 0.87274 0.93470 0.96504 0.92644 0.92686 0.92104 0.93139 0.92356 0.77682 0.87580 0.91681 0.89151 0.88134 0.89985 0.91399 0.76704 0.84790 0.86755 0.96681 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 11.19 55.49 0.62 -26.97 16 2 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 3 Si 0.90 23.16 29.59 -169.99 -5.03 18.13 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.26 -7.47 9.59 -15.06 -0.14 -7.61 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -15.18 2.99 -172.31 -0.52 -15.70 16 10 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 11 C -0.13 -2.22 6.08 -26.62 -0.16 -2.38 16 12 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C 0.12 2.28 2.60 -67.81 -0.18 2.10 16 14 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.72 -11.26 5.08 -53.69 -0.27 -11.53 16 16 C 0.51 8.40 7.39 -10.99 -0.08 8.32 16 17 O -0.51 -10.98 14.18 5.55 0.08 -10.90 16 18 C 0.03 0.31 4.51 -4.98 -0.02 0.29 16 19 N -0.51 -5.88 4.75 -237.55 -1.13 -7.01 16 20 C 0.04 0.26 6.03 -3.67 -0.02 0.23 16 21 C 0.07 0.45 6.46 -4.31 -0.03 0.42 16 22 N -0.73 -7.40 5.33 -61.07 -0.33 -7.72 16 23 C 0.48 7.19 7.06 -11.68 -0.08 7.11 16 24 O -0.54 -10.76 17.82 5.56 0.10 -10.66 16 25 C 0.04 0.51 5.49 -5.19 -0.03 0.48 16 26 C 0.17 4.12 4.89 -3.71 -0.02 4.10 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.39 4.62 8.60 -40.82 -0.35 4.27 16 35 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.07 0.72 6.23 -51.93 -0.32 0.40 16 37 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.37 7.09 -51.93 -0.37 0.00 16 41 H 0.40 3.68 8.84 -40.82 -0.36 3.32 16 42 H 0.13 2.53 5.88 -51.92 -0.31 2.23 16 43 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.76 6.04 -51.93 -0.31 2.45 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -37.35 352.96 -9.19 -46.55 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.02 Total: 6.27 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -1.02 Total: 14.23 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.62 Total: -68.93 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.18 Total: -21.56 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.35 -9.19 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008170435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.817 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds