Wall clock time and date at job start Fri Apr 10 2020 18:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48497 * 109.46839 * 239.99628 * 3 2 1 5 5 H 1.48500 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99906 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 197.37018 * 7 2 1 9 9 N 1.36931 * 119.99891 * 17.36942 * 7 2 1 10 10 C 1.46935 * 120.63006 * 207.68249 * 9 7 2 11 11 C 1.53185 * 108.77643 * 233.58574 * 10 9 7 12 12 C 1.53037 * 109.31470 * 305.36754 * 11 10 9 13 13 C 1.53040 * 109.53016 * 61.37244 * 12 11 10 14 14 H 1.08997 * 109.49738 * 58.57791 * 13 12 11 15 15 N 1.46497 * 109.50004 * 178.67669 * 13 12 11 16 16 C 1.34774 * 120.00173 * 204.99789 * 15 13 12 17 17 O 1.21291 * 119.99764 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00185 * 180.02562 * 16 15 13 19 19 N 1.46905 * 109.47059 * 180.02562 * 18 16 15 20 20 C 1.47194 * 110.99812 * 169.99842 * 19 18 16 21 21 C 1.52983 * 108.73091 * 54.36711 * 20 19 18 22 22 N 1.46016 * 110.03898 * 50.28685 * 21 20 19 23 23 C 1.33709 * 122.93048 * 341.84108 * 22 21 20 24 24 O 1.21282 * 118.62257 * 181.68225 * 23 22 21 25 25 C 1.46900 * 110.99881 * 292.88748 * 19 18 16 26 26 C 1.46926 * 120.63289 * 27.66355 * 9 7 2 27 27 H 0.96998 * 120.00359 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58209 * 113.79717 * 10 9 7 29 29 H 1.08997 * 109.58595 * 353.38234 * 10 9 7 30 30 H 1.08995 * 109.49620 * 185.41324 * 11 10 9 31 31 H 1.09005 * 109.52354 * 65.33756 * 11 10 9 32 32 H 1.08999 * 109.45832 * 181.38516 * 12 11 10 33 33 H 1.09001 * 109.45903 * 301.35191 * 12 11 10 34 34 H 0.96998 * 119.99824 * 24.99670 * 15 13 12 35 35 H 1.09002 * 109.46961 * 299.99706 * 18 16 15 36 36 H 1.08992 * 109.47261 * 60.00028 * 18 16 15 37 37 H 1.08999 * 109.58753 * 174.13949 * 20 19 18 38 38 H 1.08993 * 109.59296 * 294.58951 * 20 19 18 39 39 H 1.08991 * 109.37924 * 170.46344 * 21 20 19 40 40 H 1.08998 * 109.37430 * 290.23223 * 21 20 19 41 41 H 0.97009 * 118.53058 * 161.86123 * 22 21 20 42 42 H 1.09007 * 109.38414 * 47.08727 * 25 19 18 43 43 H 1.08999 * 109.38645 * 166.77613 * 25 19 18 44 44 H 1.09005 * 109.58272 * 246.19718 * 26 9 7 45 45 H 1.09001 * 109.58488 * 6.62350 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2798 9 7 1.3725 -2.3611 -0.3530 10 6 1.8195 -3.6546 0.1818 11 6 2.0745 -4.6102 -0.9880 12 6 0.8188 -4.6903 -1.8592 13 6 0.5011 -3.3052 -2.4274 14 1 1.3499 -2.9478 -3.0104 15 7 -0.6826 -3.3888 -3.2865 16 6 -0.8686 -2.4835 -4.2675 17 8 -0.0556 -1.5999 -4.4393 18 6 -2.0865 -2.5691 -5.1508 19 7 -2.0563 -1.4776 -6.1336 20 6 -3.0955 -1.6627 -7.1594 21 6 -4.4489 -1.8231 -6.4644 22 7 -4.6461 -0.7460 -5.4985 23 6 -3.6420 0.0011 -5.0278 24 8 -3.8905 0.8556 -4.2037 25 6 -2.2189 -0.1736 -5.4771 26 6 0.2279 -2.3349 -1.2738 27 1 -0.4850 0.8400 -0.0004 28 1 1.0471 -4.0685 0.8301 29 1 2.7402 -3.5171 0.7488 30 1 2.3137 -5.6013 -0.6027 31 1 2.9085 -4.2409 -1.5849 32 1 0.9892 -5.3885 -2.6786 33 1 -0.0204 -5.0365 -1.2557 34 1 -1.3325 -4.0957 -3.1492 35 1 -2.0908 -3.5266 -5.6718 36 1 -2.9851 -2.4837 -4.5399 37 1 -3.1218 -0.7917 -7.8142 38 1 -2.8767 -2.5560 -7.7443 39 1 -5.2440 -1.7910 -7.2092 40 1 -4.4777 -2.7814 -5.9458 41 1 -5.5457 -0.5646 -5.1840 42 1 -1.5573 -0.1187 -4.6126 43 1 -1.9612 0.6195 -6.1790 44 1 -0.6742 -2.6413 -0.7442 45 1 0.0986 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008170435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:25 Heat of formation + Delta-G solvation = -63.942378 kcal Electronic energy + Delta-G solvation = -27210.288430 eV Core-core repulsion = 23455.232890 eV Total energy + Delta-G solvation = -3755.055541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93591 -40.65038 -39.06023 -38.18860 -35.80692 -35.12628 -34.43509 -31.97135 -31.13656 -30.87716 -29.19140 -27.25277 -26.04792 -24.17418 -23.91329 -23.30862 -21.56433 -21.04799 -20.08000 -18.77185 -18.48914 -18.30275 -17.39751 -17.23136 -16.97289 -16.53765 -16.16541 -15.89387 -15.80188 -15.45796 -15.27842 -15.13574 -14.78173 -14.44459 -14.14794 -14.01979 -13.96971 -13.56526 -13.43017 -12.94835 -12.79671 -12.76944 -12.66720 -12.44976 -12.31785 -12.26517 -12.09067 -11.69438 -11.68209 -11.57318 -11.26362 -10.72145 -10.57741 -10.20623 -10.02812 -9.39190 -8.71362 -7.91730 -5.37449 1.36918 1.39095 1.43925 1.48453 1.73206 2.02373 2.21372 2.46755 2.84755 3.24816 3.49118 3.65619 3.81359 3.89322 3.98558 4.04018 4.15315 4.20838 4.25399 4.29574 4.38327 4.49226 4.52202 4.63146 4.69340 4.75609 4.82695 4.92473 4.97942 5.09428 5.20777 5.23932 5.34225 5.49334 5.51765 5.53342 5.59516 5.76139 5.79403 5.87174 6.13410 6.32976 6.71238 7.03723 7.09434 7.43575 7.83868 8.31744 9.11877 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.004737 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.939376 B = 5909.006455 C = 7362.363919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.050 4.050 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.265 4.265 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.134 3.866 14 H 0.050 0.950 15 N -0.710 5.710 16 C 0.496 3.504 17 O -0.571 6.571 18 C 0.039 3.961 19 N -0.515 5.515 20 C 0.034 3.966 21 C 0.066 3.934 22 N -0.712 5.712 23 C 0.484 3.516 24 O -0.607 6.607 25 C 0.042 3.958 26 C 0.178 3.822 27 H 0.244 0.756 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.404 0.596 42 H 0.081 0.919 43 H 0.119 0.881 44 H -0.005 1.005 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -14.927 -17.221 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.245 4.245 3 Si 0.787 3.213 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.027 3.973 14 H 0.068 0.932 15 N -0.363 5.363 16 C 0.283 3.717 17 O -0.449 6.449 18 C -0.092 4.092 19 N -0.239 5.239 20 C -0.093 4.093 21 C -0.058 4.058 22 N -0.364 5.364 23 C 0.270 3.730 24 O -0.488 6.488 25 C -0.089 4.089 26 C 0.051 3.949 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.176 0.824 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.240 0.760 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.013 0.987 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.004 -13.816 -17.230 23.850 hybrid contribution -1.061 1.485 1.154 2.159 sum -10.065 -12.331 -16.075 22.622 Atomic orbital electron populations 1.70161 1.06767 1.25518 1.55164 1.25770 0.95934 1.01575 1.01241 0.85466 0.77768 0.79575 0.78534 1.20943 1.22458 1.18835 1.19477 0.93081 0.86253 1.40760 0.91272 1.44257 1.35984 1.02697 1.50496 1.21193 0.97454 0.85607 0.94768 1.21900 0.97179 1.00037 0.97000 1.21631 0.98886 0.93921 0.99848 1.21417 0.87309 0.97741 0.90813 0.93207 1.45860 1.25902 1.31895 1.32675 1.21323 0.88301 0.81031 0.81035 1.90725 1.47292 1.35503 1.71398 1.22170 0.93860 0.98680 0.94443 1.62196 1.48634 0.99619 1.13459 1.22921 0.86202 1.06659 0.93481 1.22528 1.01051 0.89671 0.92548 1.45652 1.09915 1.35405 1.45430 1.21553 0.90280 0.80729 0.80428 1.90769 1.85341 1.37221 1.35451 1.22357 0.90270 0.94762 1.01513 1.20795 0.87849 0.97582 0.88640 0.94676 0.96174 0.92729 0.88352 0.93053 0.89171 0.90816 0.74980 0.82380 0.91054 0.88768 0.84371 0.86123 0.89127 0.75975 0.90090 0.86274 0.98739 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.89 11.19 21.65 0.24 -60.65 16 2 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 3 Si 0.96 49.84 29.59 68.60 2.03 51.87 16 4 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 5 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 6 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.27 -15.76 9.59 84.03 0.81 -14.96 16 8 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 9 N -0.61 -32.50 2.99 -699.08 -2.09 -34.59 16 10 C 0.13 5.56 6.52 86.36 0.56 6.13 16 11 C -0.12 -3.79 6.08 30.67 0.19 -3.60 16 12 C -0.10 -3.01 5.35 30.62 0.16 -2.85 16 13 C 0.13 5.19 2.60 45.07 0.12 5.31 16 14 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 15 N -0.71 -21.60 5.08 -442.17 -2.25 -23.85 16 16 C 0.50 16.50 7.39 87.66 0.65 17.15 16 17 O -0.57 -25.94 14.18 -3.06 -0.04 -25.99 16 18 C 0.04 0.79 4.51 85.55 0.39 1.18 16 19 N -0.52 -11.21 4.75 -905.47 -4.30 -15.51 16 20 C 0.03 0.34 6.03 86.24 0.52 0.86 16 21 C 0.07 0.52 6.46 86.47 0.56 1.08 16 22 N -0.71 -13.15 5.33 -466.10 -2.48 -15.63 16 23 C 0.48 14.83 7.06 87.68 0.62 15.45 16 24 O -0.61 -26.01 17.82 -3.04 -0.05 -26.07 16 25 C 0.04 1.30 5.49 85.42 0.47 1.77 16 26 C 0.18 9.24 4.89 86.36 0.42 9.67 16 27 H 0.24 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 30 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.41 8.66 8.60 -92.71 -0.80 7.87 16 35 H 0.16 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.07 1.41 6.23 -2.39 -0.01 1.39 16 37 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 38 H 0.14 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.09 0.43 7.09 -2.39 -0.02 0.41 16 41 H 0.40 6.80 8.84 -92.70 -0.82 5.98 16 42 H 0.08 3.41 5.88 -2.38 -0.01 3.40 16 43 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 44 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 45 H 0.04 2.47 6.04 -2.39 -0.01 2.46 16 Total: -1.00 -93.34 352.96 -3.68 -97.01 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.60 Total: 18.84 kcal Atomic # 6 Polarization: 28.68 SS G_CDS: 5.88 Total: 34.56 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -10.88 Total: -150.23 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.10 Total: -52.05 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.03 Total: 51.87 kcal Total: -93.34 -3.68 -97.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008170435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.071 kcal (2) G-P(sol) polarization free energy of solvation -93.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds