Wall clock time and date at job start Fri Apr 10 2020 18:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49679 * 301.40966 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21273 * 120.00474 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99710 * 179.97438 * 16 15 13 19 19 N 1.46901 * 109.47266 * 180.02562 * 18 16 15 20 20 C 1.47185 * 110.99866 * 169.99972 * 19 18 16 21 21 C 1.52984 * 108.73192 * 54.37113 * 20 19 18 22 22 N 1.46001 * 110.04184 * 50.28615 * 21 20 19 23 23 C 1.33718 * 122.92944 * 341.84715 * 22 21 20 24 24 O 1.21281 * 118.62272 * 181.68631 * 23 22 21 25 25 C 1.46899 * 111.00003 * 292.89359 * 19 18 16 26 26 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 27 27 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 28 28 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 29 29 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 30 30 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 31 31 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 32 32 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 33 33 H 1.09004 * 109.46009 * 178.61596 * 12 11 10 34 34 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 35 35 H 1.09008 * 109.47234 * 300.00277 * 18 16 15 36 36 H 1.09002 * 109.46745 * 60.00031 * 18 16 15 37 37 H 1.09004 * 109.59174 * 174.14484 * 20 19 18 38 38 H 1.09002 * 109.59700 * 294.59555 * 20 19 18 39 39 H 1.08995 * 109.37764 * 170.46824 * 21 20 19 40 40 H 1.08999 * 109.37218 * 290.11611 * 21 20 19 41 41 H 0.97003 * 118.53784 * 161.85822 * 22 21 20 42 42 H 1.09000 * 109.38755 * 47.08546 * 25 19 18 43 43 H 1.08996 * 109.38435 * 166.77403 * 25 19 18 44 44 H 1.08991 * 109.58972 * 353.42219 * 26 9 7 45 45 H 1.09010 * 109.58337 * 113.84630 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0862 -4.1702 -1.6068 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5257 -5.4207 -0.1242 18 6 3.8939 -7.6462 0.3422 19 7 5.2788 -7.7505 0.8209 20 6 5.4962 -9.0195 1.5340 21 6 5.0754 -10.1737 0.6223 22 7 5.6990 -10.0279 -0.6897 23 6 6.2134 -8.8733 -1.1258 24 8 6.6856 -8.8324 -2.2422 25 6 6.2309 -7.6243 -0.2907 26 6 1.7895 -3.6586 0.0310 27 1 -0.4849 -0.8358 0.0845 28 1 -0.5660 -2.5739 -1.1474 29 1 0.3221 -1.2245 -1.8980 30 1 0.0162 -3.1908 -3.4467 31 1 1.7267 -2.7932 -3.1525 32 1 0.1357 -4.9490 -1.6894 33 1 1.3155 -5.2432 -2.9891 34 1 1.7204 -6.5802 -0.6801 35 1 3.2092 -7.8678 1.1609 36 1 3.7344 -8.3581 -0.4676 37 1 6.5516 -9.1201 1.7876 38 1 4.8963 -9.0350 2.4439 39 1 5.3868 -11.1185 1.0678 40 1 3.9912 -10.1689 0.5099 41 1 5.7419 -10.8032 -1.2712 42 1 5.9534 -6.7712 -0.9098 43 1 7.2336 -7.4694 0.1076 44 1 2.6341 -3.5588 0.7127 45 1 0.9419 -4.0972 0.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008170439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:27 Heat of formation + Delta-G solvation = -67.000472 kcal Electronic energy + Delta-G solvation = -26642.070698 eV Core-core repulsion = 22886.882548 eV Total energy + Delta-G solvation = -3755.188150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96460 -40.76542 -39.24563 -38.24142 -36.15337 -35.14480 -34.25131 -32.30415 -31.10304 -30.87921 -29.16879 -27.10630 -26.06559 -24.26374 -23.95733 -23.39477 -21.64892 -21.14088 -20.11278 -19.41945 -18.50003 -18.35299 -17.44897 -17.20476 -16.87146 -16.34055 -16.17371 -15.97283 -15.85009 -15.63978 -15.47089 -15.24699 -14.94441 -14.59658 -14.32599 -14.05484 -13.99854 -13.64672 -13.53330 -13.04766 -12.78543 -12.75591 -12.62156 -12.39407 -12.31644 -11.95080 -11.88248 -11.84692 -11.70026 -11.67014 -11.24979 -10.84198 -10.60109 -10.20728 -10.11683 -9.38501 -8.94798 -8.28123 -5.45996 1.38956 1.55782 1.62707 1.64283 1.82856 1.95858 2.16191 2.62624 2.82830 3.17795 3.47402 3.52142 3.70168 3.80704 3.86163 3.99600 4.00855 4.11918 4.18095 4.23081 4.32894 4.37238 4.44110 4.51137 4.68483 4.68622 4.72545 4.75549 4.91109 4.96539 4.99241 5.05807 5.13762 5.23768 5.38914 5.51129 5.54246 5.74849 5.80954 5.85482 6.13159 6.37499 6.61336 7.02872 7.03207 7.32957 7.73952 8.15506 8.95763 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003078 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.242900 B = 9095.666388 C = 9465.719767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.067 4.067 3 Si 1.112 2.888 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.361 4.361 8 H 0.036 0.964 9 N -0.616 5.616 10 C 0.152 3.848 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.144 3.856 14 H 0.049 0.951 15 N -0.710 5.710 16 C 0.499 3.501 17 O -0.570 6.570 18 C 0.039 3.961 19 N -0.523 5.523 20 C 0.034 3.966 21 C 0.068 3.932 22 N -0.711 5.711 23 C 0.488 3.512 24 O -0.604 6.604 25 C 0.042 3.958 26 C 0.149 3.851 27 H 0.256 0.744 28 H 0.016 0.984 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.405 0.595 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.026 0.974 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -26.620 1.933 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.264 4.264 3 Si 0.936 3.064 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.491 4.491 8 H 0.053 0.947 9 N -0.341 5.341 10 C 0.026 3.974 11 C -0.166 4.166 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.067 0.933 15 N -0.363 5.363 16 C 0.286 3.714 17 O -0.448 6.448 18 C -0.091 4.091 19 N -0.247 5.247 20 C -0.093 4.093 21 C -0.057 4.057 22 N -0.363 5.363 23 C 0.273 3.727 24 O -0.485 6.485 25 C -0.089 4.089 26 C 0.023 3.977 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.254 0.746 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.242 0.758 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.045 0.955 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.151 -23.787 1.848 24.409 hybrid contribution -0.106 -2.363 -0.622 2.445 sum 5.045 -26.150 1.226 26.660 Atomic orbital electron populations 1.70897 1.07205 1.29520 1.50082 1.27162 0.96675 1.04462 0.98120 0.82897 0.73950 0.72313 0.77198 1.20945 1.20832 1.20481 1.20135 0.96521 0.89978 1.42484 0.94661 1.44259 1.47089 1.01637 1.41102 1.20930 0.89985 0.98237 0.88216 1.21939 1.01392 0.95297 0.97968 1.21608 0.97516 0.97136 0.97920 1.21061 0.98236 0.81982 0.95058 0.93297 1.45854 1.13930 1.12763 1.63752 1.21334 0.81951 0.91249 0.76837 1.90724 1.45286 1.53059 1.55711 1.22155 0.92345 0.91783 1.02854 1.62143 1.02027 1.36192 1.24299 1.22877 1.04890 0.83924 0.97639 1.22463 0.99247 1.02193 0.81766 1.45648 1.59232 1.11412 1.20028 1.21494 0.76840 0.87209 0.87121 1.90745 1.48866 1.86116 1.22742 1.22401 1.00200 0.94096 0.92197 1.21105 0.96511 0.85769 0.94341 0.93378 0.96626 0.93849 0.89254 0.93639 0.89997 0.89526 0.74621 0.83428 0.89925 0.88781 0.85198 0.86428 0.89073 0.75827 0.89020 0.86401 0.95545 0.95777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 12.45 21.65 0.27 -57.54 16 2 C -0.07 -3.97 4.69 84.86 0.40 -3.57 16 3 Si 1.11 53.29 29.98 68.60 2.06 55.35 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.36 -21.69 9.48 84.03 0.80 -20.89 16 8 H 0.04 2.22 7.94 -2.91 -0.02 2.19 16 9 N -0.62 -32.47 2.84 -699.93 -1.99 -34.45 16 10 C 0.15 7.13 4.70 86.36 0.41 7.54 16 11 C -0.13 -4.51 6.08 30.67 0.19 -4.33 16 12 C -0.10 -3.00 5.36 30.62 0.16 -2.84 16 13 C 0.14 5.04 2.59 44.93 0.12 5.15 16 14 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 15 N -0.71 -17.97 5.08 -442.86 -2.25 -20.22 16 16 C 0.50 13.85 7.39 87.66 0.65 14.50 16 17 O -0.57 -22.44 14.18 -3.01 -0.04 -22.48 16 18 C 0.04 0.62 4.51 85.56 0.39 1.00 16 19 N -0.52 -9.19 4.75 -905.46 -4.30 -13.50 16 20 C 0.03 0.25 6.03 86.24 0.52 0.77 16 21 C 0.07 0.27 6.46 86.47 0.56 0.83 16 22 N -0.71 -8.71 5.33 -466.11 -2.48 -11.20 16 23 C 0.49 10.95 7.06 87.68 0.62 11.57 16 24 O -0.60 -19.75 17.82 -3.03 -0.05 -19.81 16 25 C 0.04 0.98 5.49 85.42 0.47 1.45 16 26 C 0.15 6.66 6.06 86.22 0.52 7.18 16 27 H 0.26 15.97 6.72 -92.71 -0.62 15.35 16 28 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 29 H 0.04 2.34 6.38 -2.39 -0.02 2.32 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.42 6.73 8.60 -92.71 -0.80 5.93 16 35 H 0.15 1.26 8.08 -2.38 -0.02 1.24 16 36 H 0.08 1.04 6.23 -2.39 -0.01 1.02 16 37 H 0.09 0.69 8.08 -2.38 -0.02 0.67 16 38 H 0.13 0.34 8.14 -2.39 -0.02 0.33 16 39 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.09 0.09 7.09 -2.39 -0.02 0.07 16 41 H 0.41 4.25 8.84 -92.71 -0.82 3.43 16 42 H 0.09 2.87 5.88 -2.39 -0.01 2.85 16 43 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 45 H 0.02 1.02 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -87.65 352.02 -3.46 -91.11 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.45 Total: 14.38 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.79 Total: 18.35 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -10.75 Total: -136.90 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.10 Total: -42.29 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.06 Total: 55.35 kcal Total: -87.65 -3.46 -91.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008170439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.106 kcal (2) G-P(sol) polarization free energy of solvation -87.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds