Wall clock time and date at job start Fri Apr 10 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46008 * 118.53853 * 2 1 4 4 C 1.52978 * 109.94908 * 161.89779 * 3 2 1 5 5 N 1.46917 * 108.87626 * 50.31980 * 4 3 2 6 6 C 1.46902 * 110.99539 * 54.31769 * 5 4 3 7 7 C 1.50696 * 109.47057 * 171.11084 * 6 5 4 8 8 O 1.21280 * 120.00318 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00126 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99997 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.64255 * 34.30090 * 10 9 7 12 12 C 1.55158 * 110.72032 * 157.44301 * 10 9 7 13 13 C 1.55124 * 101.48589 * 153.73386 * 12 10 9 14 14 N 1.47419 * 104.94280 * 323.22099 * 13 12 10 15 15 C 1.36935 * 125.65072 * 203.96511 * 14 13 12 16 16 H 1.08002 * 120.00184 * 169.98576 * 15 14 13 17 17 C 1.38815 * 120.00023 * 349.98695 * 15 14 13 18 18 N 1.31621 * 119.99771 * 350.42319 * 17 15 14 19 19 Si 1.86803 * 120.00081 * 170.41971 * 17 15 14 20 20 H 1.48494 * 109.47305 * 94.14380 * 19 17 15 21 21 H 1.48501 * 109.46930 * 214.14249 * 19 17 15 22 22 H 1.48495 * 109.46934 * 334.13982 * 19 17 15 23 23 C 1.47023 * 108.70585 * 24.00581 * 14 13 12 24 24 C 1.46902 * 110.13610 * 290.98023 * 5 4 3 25 25 C 1.33721 * 118.53099 * 180.02562 * 2 1 3 26 26 O 1.21270 * 118.62591 * 1.68371 * 25 2 1 27 27 H 1.08996 * 109.47732 * 89.99100 * 1 2 3 28 28 H 1.09002 * 109.47199 * 210.00211 * 1 2 3 29 29 H 1.09008 * 109.46729 * 329.99581 * 1 2 3 30 30 H 1.08999 * 109.37883 * 282.02459 * 3 2 1 31 31 H 1.09004 * 109.36902 * 41.78588 * 3 2 1 32 32 H 1.08991 * 109.59724 * 170.00886 * 4 3 2 33 33 H 1.08997 * 109.59653 * 290.46622 * 4 3 2 34 34 H 1.09005 * 109.46808 * 291.11087 * 6 5 4 35 35 H 1.08993 * 109.46984 * 51.10986 * 6 5 4 36 36 H 0.96998 * 119.99974 * 0.02562 * 9 7 6 37 37 H 1.09003 * 111.00654 * 271.94025 * 12 10 9 38 38 H 1.09005 * 110.99999 * 35.79269 * 12 10 9 39 39 H 1.09009 * 110.41794 * 204.29839 * 13 12 10 40 40 H 1.08996 * 110.20776 * 82.04454 * 13 12 10 41 41 H 0.97003 * 120.00089 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.88192 * 239.52382 * 23 14 13 43 43 H 1.09004 * 109.88372 * 118.35054 * 23 14 13 44 44 H 1.09000 * 109.38868 * 290.11020 * 24 5 4 45 45 H 1.09007 * 109.38307 * 170.42407 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6127 1.0882 0.4468 5 7 4.2095 -0.0015 -0.3372 6 6 4.0680 0.2479 -1.7780 7 6 4.8747 -0.7677 -2.5452 8 8 5.5058 -1.6156 -1.9505 9 7 4.8949 -0.7339 -3.8924 10 6 5.6795 -1.7209 -4.6382 11 1 5.6759 -2.6823 -4.1246 12 6 5.1412 -1.8699 -6.0858 13 6 6.4105 -2.3455 -6.8400 14 7 7.5235 -1.6102 -6.2124 15 6 8.7299 -1.3355 -6.7990 16 1 9.4196 -0.6545 -6.3225 17 6 9.0666 -1.9322 -8.0063 18 7 8.3186 -2.8995 -8.4934 19 14 10.5811 -1.3623 -8.9396 20 1 11.7375 -2.2209 -8.5781 21 1 10.3288 -1.4608 -10.3998 22 1 10.8807 0.0477 -8.5831 23 6 7.1241 -1.2215 -4.8519 24 6 3.6017 -1.2855 0.0370 25 6 2.1037 -1.1748 -0.0005 26 8 1.4464 -2.1934 -0.0323 27 1 -0.3634 0.0002 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.1472 1.7027 -1.0057 31 1 1.6617 1.9666 0.6852 32 1 4.1739 2.0070 0.2770 33 1 3.6377 0.8324 1.5060 34 1 3.0181 0.1658 -2.0595 35 1 4.4293 1.2496 -2.0105 36 1 4.3904 -0.0556 -4.3681 37 1 4.3511 -2.6193 -6.1336 38 1 4.7934 -0.9124 -6.4737 39 1 6.3399 -2.0955 -7.8987 40 1 6.5449 -3.4195 -6.7111 41 1 8.5536 -3.3163 -9.3372 42 1 7.1601 -0.1368 -4.7507 43 1 7.7885 -1.6862 -4.1234 44 1 3.9193 -1.5564 1.0439 45 1 3.9252 -2.0564 -0.6625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015012272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:36 Heat of formation + Delta-G solvation = -44.089366 kcal Electronic energy + Delta-G solvation = -26341.946901 eV Core-core repulsion = 22587.752251 eV Total energy + Delta-G solvation = -3754.194649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06114 -40.73523 -39.04803 -38.17610 -36.05126 -35.54412 -33.78830 -31.26958 -30.97324 -30.34817 -28.86320 -27.77558 -26.36675 -25.64259 -23.64792 -22.38888 -21.97022 -21.32850 -19.70369 -18.93045 -18.41701 -17.91031 -17.52465 -17.26716 -17.08681 -16.69482 -16.43998 -16.08980 -15.79242 -15.67428 -15.04365 -14.83137 -14.39211 -14.18409 -14.11592 -13.94902 -13.82059 -13.57314 -13.50833 -13.06018 -12.96135 -12.76366 -12.72827 -12.65901 -12.39486 -12.24135 -12.13864 -12.01731 -11.84040 -11.59273 -11.55858 -10.83452 -10.70112 -10.07909 -9.85024 -9.35781 -8.89699 -7.89943 -5.25686 1.40788 1.46525 1.48070 1.57956 1.64547 1.84689 2.05783 2.49712 2.85647 3.29725 3.41993 3.59257 3.73998 3.81996 3.89057 4.01031 4.02798 4.17861 4.22659 4.24244 4.35053 4.39516 4.55729 4.57227 4.59857 4.69569 4.73137 4.75119 4.88865 4.92496 4.98511 4.99729 5.05523 5.30750 5.41802 5.54045 5.57025 5.62504 5.68851 5.84670 6.18146 6.27238 6.62271 6.97024 7.06062 7.31660 7.72731 8.38647 9.21965 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.002645 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.875526 B =10581.723865 C =10879.948326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.069 3.931 4 C 0.037 3.963 5 N -0.519 5.519 6 C 0.038 3.962 7 C 0.504 3.496 8 O -0.567 6.567 9 N -0.704 5.704 10 C 0.151 3.849 11 H 0.072 0.928 12 C -0.127 4.127 13 C 0.176 3.824 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.077 0.923 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.130 3.870 24 C 0.044 3.956 25 C 0.479 3.521 26 O -0.599 6.599 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.417 0.583 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.045 0.955 40 H -0.005 1.005 41 H 0.250 0.750 42 H 0.037 0.963 43 H 0.002 0.998 44 H 0.119 0.881 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.615 15.621 17.409 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C -0.054 4.054 4 C -0.091 4.091 5 N -0.242 5.242 6 C -0.092 4.092 7 C 0.291 3.709 8 O -0.445 6.445 9 N -0.357 5.357 10 C 0.044 3.956 11 H 0.090 0.910 12 C -0.166 4.166 13 C 0.051 3.949 14 N -0.349 5.349 15 C -0.377 4.377 16 H 0.095 0.905 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.192 1.192 23 C 0.004 3.996 24 C -0.087 4.087 25 C 0.267 3.733 26 O -0.479 6.479 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.166 0.834 36 H 0.254 0.746 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.137 0.863 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.877 14.464 17.772 28.458 hybrid contribution 0.029 -0.316 -1.091 1.136 sum -16.848 14.147 16.681 27.609 Atomic orbital electron populations 1.21813 0.78656 1.03746 1.02415 1.47605 1.08180 1.06364 1.71844 1.22549 0.94282 0.83913 1.04639 1.22823 0.91675 0.95768 0.98794 1.62127 1.56116 1.02110 1.03892 1.22146 0.99042 1.00114 0.87907 1.21252 0.81507 0.85759 0.82393 1.90697 1.45165 1.39462 1.69221 1.45811 1.50011 1.33886 1.06035 1.21557 0.89929 0.91749 0.92332 0.90953 1.23149 0.97720 1.02954 0.92797 1.21255 0.84595 0.92844 0.96199 1.44743 1.13602 1.65546 1.11049 1.19393 0.94075 1.20933 1.03267 0.90518 1.25696 1.02095 0.97819 0.99952 1.70148 1.41561 1.26723 1.21179 0.85047 0.78458 0.78207 0.77472 1.21570 1.21538 1.19161 1.21683 0.94361 0.97398 0.86173 1.22439 0.85971 0.94763 1.05542 1.21632 0.92722 0.83357 0.75614 1.90694 1.68452 1.36553 1.52221 0.92460 0.92765 0.87601 0.89277 0.86605 0.84983 0.88704 0.90315 0.83356 0.74581 0.89151 0.89128 0.93653 0.98702 0.94093 0.94514 0.98034 0.86342 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.29 127.77 1.32 2.23 16 2 N -0.61 -8.66 3.04 -850.21 -2.58 -11.24 16 3 C 0.07 0.36 5.70 86.46 0.49 0.85 16 4 C 0.04 0.26 6.01 86.29 0.52 0.78 16 5 N -0.52 -8.70 4.77 -906.23 -4.32 -13.02 16 6 C 0.04 0.59 4.54 85.56 0.39 0.98 16 7 C 0.50 13.34 7.43 87.66 0.65 13.99 16 8 O -0.57 -20.71 14.12 -3.03 -0.04 -20.75 16 9 N -0.70 -17.92 5.12 -436.92 -2.24 -20.15 16 10 C 0.15 5.33 3.27 46.18 0.15 5.48 16 11 H 0.07 2.89 7.62 -2.39 -0.02 2.87 16 12 C -0.13 -4.38 6.73 32.06 0.22 -4.17 16 13 C 0.18 8.65 5.42 86.93 0.47 9.12 16 14 N -0.62 -32.89 3.40 -691.54 -2.35 -35.24 16 15 C -0.25 -14.24 10.24 84.03 0.86 -13.38 16 16 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 17 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 18 N -0.95 -57.34 10.68 21.65 0.23 -57.11 16 19 Si 0.98 45.93 29.56 68.60 2.03 47.96 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.13 5.73 7.00 86.73 0.61 6.34 16 24 C 0.04 0.99 5.48 85.42 0.47 1.46 16 25 C 0.48 11.13 6.83 87.68 0.60 11.72 16 26 O -0.60 -19.72 16.33 -3.00 -0.05 -19.77 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.94 7.26 -2.39 -0.02 0.92 16 29 H 0.11 0.49 7.92 -2.38 -0.02 0.47 16 30 H 0.09 0.23 7.07 -2.39 -0.02 0.21 16 31 H 0.12 -0.02 7.98 -2.39 -0.02 -0.04 16 32 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 34 H 0.08 1.04 6.19 -2.38 -0.01 1.03 16 35 H 0.15 1.23 8.09 -2.39 -0.02 1.21 16 36 H 0.42 7.36 8.54 -92.71 -0.79 6.57 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 38 H 0.09 2.68 8.00 -2.38 -0.02 2.66 16 39 H 0.05 2.45 6.94 -2.38 -0.02 2.43 16 40 H -0.01 -0.28 8.07 -2.39 -0.02 -0.30 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.04 1.53 8.03 -2.39 -0.02 1.51 16 43 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 44 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.10 2.87 5.78 -2.38 -0.01 2.86 16 Total: -1.00 -84.44 355.10 -1.92 -86.36 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.21 Total: 10.67 kcal Atomic # 6 Polarization: 25.10 SS G_CDS: 7.20 Total: 32.29 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -11.25 Total: -136.76 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.09 Total: -40.52 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -84.44 -1.92 -86.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015012272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.267 kcal (2) G-P(sol) polarization free energy of solvation -84.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds