Wall clock time and date at job start Fri Apr 10 2020 18:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48497 * 109.47195 * 269.99777 * 3 2 1 5 5 H 1.48508 * 109.47187 * 29.99872 * 3 2 1 6 6 H 1.48501 * 109.47235 * 149.99581 * 3 2 1 7 7 C 1.38812 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64687 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.27092 * 180.79527 * 10 9 7 12 12 C 1.55155 * 102.94581 * 22.19111 * 11 10 9 13 13 H 1.08994 * 111.00472 * 206.38927 * 12 11 10 14 14 N 1.46502 * 111.00131 * 82.56945 * 12 11 10 15 15 C 1.34775 * 119.99613 * 154.99913 * 14 12 11 16 16 O 1.21280 * 120.00293 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99956 * 179.97438 * 15 14 12 18 18 H 1.09001 * 109.58399 * 2.58755 * 17 15 14 19 19 C 1.53185 * 109.58790 * 242.29866 * 17 15 14 20 20 C 1.53043 * 109.31140 * 185.57493 * 19 17 15 21 21 C 1.53048 * 109.53487 * 61.36938 * 20 19 17 22 22 C 1.53190 * 109.31075 * 298.63619 * 21 20 19 23 23 N 1.46927 * 108.78113 * 54.63426 * 22 21 20 24 24 C 1.34770 * 120.63377 * 126.38767 * 23 22 21 25 25 N 1.34783 * 119.99749 * 4.84109 * 24 23 22 26 26 O 1.21579 * 120.00160 * 184.83104 * 24 23 22 27 27 C 1.47429 * 125.65242 * 179.71020 * 9 7 2 28 28 H 0.97001 * 120.00178 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.88487 * 300.21045 * 10 9 7 30 30 H 1.09006 * 109.88347 * 61.37716 * 10 9 7 31 31 H 1.09001 * 110.72165 * 140.55804 * 11 10 9 32 32 H 1.09009 * 110.71939 * 263.82524 * 11 10 9 33 33 H 0.96994 * 120.00158 * 335.00367 * 14 12 11 34 34 H 1.08994 * 109.50111 * 305.52776 * 19 17 15 35 35 H 1.09004 * 109.49880 * 65.60006 * 19 17 15 36 36 H 1.09002 * 109.46136 * 181.38025 * 20 19 17 37 37 H 1.08997 * 109.46238 * 301.36437 * 20 19 17 38 38 H 1.09002 * 109.49533 * 58.58809 * 21 20 19 39 39 H 1.08998 * 109.49827 * 178.65217 * 21 20 19 40 40 H 1.08996 * 109.58734 * 174.42865 * 22 21 20 41 41 H 1.09004 * 109.58413 * 294.69984 * 22 21 20 42 42 H 0.96996 * 119.99789 * 5.19310 * 25 24 23 43 43 H 0.97000 * 119.99648 * 185.19865 * 25 24 23 44 44 H 1.08992 * 110.36771 * 274.98061 * 27 9 7 45 45 H 1.09000 * 110.36212 * 37.30262 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4482 -4.0442 0.0204 12 6 0.8519 -4.6585 0.6031 13 1 0.9836 -5.6866 0.2659 14 7 0.8581 -4.5836 2.0662 15 6 1.5897 -5.4599 2.7826 16 8 2.2433 -6.3101 2.2161 17 6 1.5966 -5.3826 4.2877 18 1 0.9217 -4.5922 4.6160 19 6 3.0160 -5.0836 4.7801 20 6 3.0445 -5.1440 6.3090 21 6 2.6587 -6.5505 6.7729 22 6 1.2352 -6.8662 6.3030 23 7 1.1626 -6.6693 4.8488 24 6 0.7067 -7.6503 4.0449 25 7 0.2210 -8.7883 4.5793 26 8 0.7334 -7.5086 2.8377 27 6 1.9336 -3.7311 -0.0050 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5578 -2.0557 0.8847 30 1 -0.5540 -2.0810 -0.9009 31 1 -1.2985 -4.2542 0.6693 32 1 -0.6312 -4.4143 -0.9885 33 1 0.3357 -3.9035 2.5192 34 1 3.7055 -5.8235 4.3738 35 1 3.3137 -4.0885 4.4493 36 1 4.0479 -4.9074 6.6632 37 1 2.3364 -4.4212 6.7143 38 1 3.3517 -7.2766 6.3479 39 1 2.7024 -6.5995 7.8609 40 1 0.9918 -7.9009 6.5443 41 1 0.5302 -6.1997 6.7998 42 1 0.1294 -8.8718 5.5414 43 1 -0.0369 -9.5238 4.0019 44 1 2.1668 -4.0378 -1.0246 45 1 2.8330 -3.7429 0.6107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015975022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:52 Heat of formation + Delta-G solvation = -16.614617 kcal Electronic energy + Delta-G solvation = -27435.154570 eV Core-core repulsion = 23682.151315 eV Total energy + Delta-G solvation = -3753.003255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89608 -38.69695 -37.47819 -36.80104 -33.89845 -33.42417 -32.52726 -31.78478 -31.05312 -29.03559 -27.21765 -25.73027 -24.42418 -23.82026 -21.71969 -20.90147 -19.96893 -19.56536 -19.45271 -18.40195 -17.03613 -16.82482 -16.30793 -15.69270 -15.35808 -15.07846 -14.65652 -14.54240 -14.48319 -14.14457 -13.76329 -13.64845 -13.35784 -13.27810 -12.87643 -12.63617 -12.09897 -11.80445 -11.67406 -11.64968 -11.37228 -11.08023 -10.90478 -10.87349 -10.84612 -10.55689 -10.20595 -10.07069 -9.81487 -9.71555 -9.63186 -9.48268 -9.03603 -8.72844 -8.56336 -8.12616 -6.73133 -5.65388 -2.97233 2.48355 3.16821 3.43176 3.48521 3.49954 3.56822 3.65650 4.12884 4.48578 4.55645 4.59284 4.67630 4.88603 5.02459 5.11814 5.21382 5.29740 5.49869 5.54409 5.55934 5.59581 5.65271 5.66705 5.83392 5.88551 5.95489 6.03812 6.17833 6.26286 6.40816 6.55455 6.63545 6.66120 6.75986 6.83966 6.87870 7.35096 7.61706 7.66873 7.79305 7.86856 8.21149 8.32613 8.64224 9.03431 9.29129 9.89487 10.56839 11.46561 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003972 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.056898 B = 7047.348049 C = 7978.710382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.153 4.153 12 C 0.138 3.862 13 H 0.089 0.911 14 N -0.705 5.705 15 C 0.528 3.472 16 O -0.512 6.512 17 C 0.147 3.853 18 H 0.085 0.915 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.136 4.136 22 C 0.114 3.886 23 N -0.619 5.619 24 C 0.695 3.305 25 N -0.872 5.872 26 O -0.543 6.543 27 C 0.125 3.875 28 H 0.250 0.750 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.390 0.610 43 H 0.412 0.588 44 H 0.025 0.975 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -15.247 17.051 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.192 4.192 12 C 0.032 3.968 13 H 0.107 0.893 14 N -0.356 5.356 15 C 0.313 3.687 16 O -0.387 6.387 17 C 0.039 3.961 18 H 0.102 0.898 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.175 4.175 22 C -0.009 4.009 23 N -0.360 5.360 24 C 0.395 3.605 25 N -0.443 5.443 26 O -0.417 6.417 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.220 0.780 43 H 0.243 0.757 44 H 0.042 0.958 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.361 -15.391 15.807 22.065 hybrid contribution -0.023 0.919 0.581 1.087 sum 0.337 -14.472 16.388 21.866 Atomic orbital electron populations 1.69964 1.04793 1.24797 1.57682 1.24759 0.95688 0.97476 1.02666 0.86144 0.78550 0.83689 0.77545 1.21728 1.21790 1.20802 1.19066 0.90410 0.82488 1.43006 0.90623 1.44492 1.01525 0.99925 1.87141 1.21145 0.84519 0.88073 1.00989 1.23197 0.96094 0.99828 1.00091 1.21981 0.96524 0.99163 0.79087 0.89284 1.45629 1.49032 1.33957 1.06997 1.19559 0.80469 0.80861 0.87849 1.90658 1.42501 1.33852 1.71639 1.21028 0.97229 0.84944 0.92854 0.89750 1.21845 0.95054 1.03507 0.95862 1.21502 1.02210 0.96560 0.95204 1.21939 0.96494 0.98160 1.00867 1.21634 0.97694 1.01385 0.80177 1.47009 1.68426 1.14287 1.06310 1.16076 0.78659 0.80302 0.85489 1.43211 1.72363 1.17638 1.11099 1.91246 1.59910 1.78693 1.11809 1.21962 0.94996 0.86356 0.96929 0.93923 0.93776 0.93956 0.91841 0.91278 0.77065 0.90343 0.89863 0.91133 0.91425 0.91290 0.90625 0.90383 0.91148 0.78012 0.75658 0.95771 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.76 3.39 -170.07 -0.58 -16.34 16 10 C 0.18 4.34 5.36 -3.06 -0.02 4.32 16 11 C -0.15 -3.02 6.55 -24.90 -0.16 -3.19 16 12 C 0.14 2.80 3.43 -65.78 -0.23 2.58 16 13 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 14 N -0.71 -13.11 5.19 -51.73 -0.27 -13.38 16 15 C 0.53 9.65 4.80 -10.98 -0.05 9.60 16 16 O -0.51 -11.25 13.54 -20.03 -0.27 -11.52 16 17 C 0.15 1.99 3.31 -68.75 -0.23 1.77 16 18 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 19 C -0.12 -1.48 5.33 -26.61 -0.14 -1.62 16 20 C -0.12 -0.97 5.88 -26.68 -0.16 -1.13 16 21 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 22 C 0.11 0.82 6.35 -3.71 -0.02 0.80 16 23 N -0.62 -7.32 2.97 -172.23 -0.51 -7.83 16 24 C 0.69 9.84 8.40 -86.92 -0.73 9.11 16 25 N -0.87 -7.87 8.74 27.63 0.24 -7.63 16 26 O -0.54 -10.57 12.28 -20.29 -0.25 -10.82 16 27 C 0.12 2.85 6.93 -2.52 -0.02 2.83 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 1.16 7.40 -51.93 -0.38 0.77 16 30 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.40 6.95 8.51 -40.82 -0.35 6.60 16 34 H 0.08 1.08 8.01 -51.93 -0.42 0.67 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.38 5.73 -51.93 -0.30 0.08 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.39 2.17 6.41 -40.82 -0.26 1.91 16 43 H 0.41 3.39 8.93 -40.82 -0.36 3.03 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -36.67 351.00 -10.00 -46.67 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.04 Total: 7.67 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: -2.17 Total: 17.16 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -0.54 Total: -71.74 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.52 Total: -22.34 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.67 -10.00 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015975022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.055 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds