Wall clock time and date at job start Fri Apr 10 2020 18:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48497 * 109.47195 * 269.99777 * 3 2 1 5 5 H 1.48508 * 109.47187 * 29.99872 * 3 2 1 6 6 H 1.48501 * 109.47235 * 149.99581 * 3 2 1 7 7 C 1.38812 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64687 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.27092 * 180.79527 * 10 9 7 12 12 C 1.55155 * 102.94581 * 22.19111 * 11 10 9 13 13 H 1.08994 * 111.00472 * 206.38927 * 12 11 10 14 14 N 1.46502 * 111.00131 * 82.56945 * 12 11 10 15 15 C 1.34775 * 119.99613 * 154.99913 * 14 12 11 16 16 O 1.21280 * 120.00293 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99956 * 179.97438 * 15 14 12 18 18 H 1.09001 * 109.58399 * 2.58755 * 17 15 14 19 19 C 1.53185 * 109.58790 * 242.29866 * 17 15 14 20 20 C 1.53043 * 109.31140 * 185.57493 * 19 17 15 21 21 C 1.53048 * 109.53487 * 61.36938 * 20 19 17 22 22 C 1.53190 * 109.31075 * 298.63619 * 21 20 19 23 23 N 1.46927 * 108.78113 * 54.63426 * 22 21 20 24 24 C 1.34770 * 120.63377 * 126.38767 * 23 22 21 25 25 N 1.34783 * 119.99749 * 4.84109 * 24 23 22 26 26 O 1.21579 * 120.00160 * 184.83104 * 24 23 22 27 27 C 1.47429 * 125.65242 * 179.71020 * 9 7 2 28 28 H 0.97001 * 120.00178 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.88487 * 300.21045 * 10 9 7 30 30 H 1.09006 * 109.88347 * 61.37716 * 10 9 7 31 31 H 1.09001 * 110.72165 * 140.55804 * 11 10 9 32 32 H 1.09009 * 110.71939 * 263.82524 * 11 10 9 33 33 H 0.96994 * 120.00158 * 335.00367 * 14 12 11 34 34 H 1.08994 * 109.50111 * 305.52776 * 19 17 15 35 35 H 1.09004 * 109.49880 * 65.60006 * 19 17 15 36 36 H 1.09002 * 109.46136 * 181.38025 * 20 19 17 37 37 H 1.08997 * 109.46238 * 301.36437 * 20 19 17 38 38 H 1.09002 * 109.49533 * 58.58809 * 21 20 19 39 39 H 1.08998 * 109.49827 * 178.65217 * 21 20 19 40 40 H 1.08996 * 109.58734 * 174.42865 * 22 21 20 41 41 H 1.09004 * 109.58413 * 294.69984 * 22 21 20 42 42 H 0.96996 * 119.99789 * 5.19310 * 25 24 23 43 43 H 0.97000 * 119.99648 * 185.19865 * 25 24 23 44 44 H 1.08992 * 110.36771 * 274.98061 * 27 9 7 45 45 H 1.09000 * 110.36212 * 37.30262 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4482 -4.0442 0.0204 12 6 0.8519 -4.6585 0.6031 13 1 0.9836 -5.6866 0.2659 14 7 0.8581 -4.5836 2.0662 15 6 1.5897 -5.4599 2.7826 16 8 2.2433 -6.3101 2.2161 17 6 1.5966 -5.3826 4.2877 18 1 0.9217 -4.5922 4.6160 19 6 3.0160 -5.0836 4.7801 20 6 3.0445 -5.1440 6.3090 21 6 2.6587 -6.5505 6.7729 22 6 1.2352 -6.8662 6.3030 23 7 1.1626 -6.6693 4.8488 24 6 0.7067 -7.6503 4.0449 25 7 0.2210 -8.7883 4.5793 26 8 0.7334 -7.5086 2.8377 27 6 1.9336 -3.7311 -0.0050 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5578 -2.0557 0.8847 30 1 -0.5540 -2.0810 -0.9009 31 1 -1.2985 -4.2542 0.6693 32 1 -0.6312 -4.4143 -0.9885 33 1 0.3357 -3.9035 2.5192 34 1 3.7055 -5.8235 4.3738 35 1 3.3137 -4.0885 4.4493 36 1 4.0479 -4.9074 6.6632 37 1 2.3364 -4.4212 6.7143 38 1 3.3517 -7.2766 6.3479 39 1 2.7024 -6.5995 7.8609 40 1 0.9918 -7.9009 6.5443 41 1 0.5302 -6.1997 6.7998 42 1 0.1294 -8.8718 5.5414 43 1 -0.0369 -9.5238 4.0019 44 1 2.1668 -4.0378 -1.0246 45 1 2.8330 -3.7429 0.6107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015975022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:51 Heat of formation + Delta-G solvation = -44.144969 kcal Electronic energy + Delta-G solvation = -27436.348375 eV Core-core repulsion = 23682.151315 eV Total energy + Delta-G solvation = -3754.197061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97981 -40.16290 -38.71391 -38.17966 -35.31131 -34.84798 -33.63602 -33.26013 -32.09591 -30.92842 -29.00954 -26.84454 -26.22416 -24.79121 -22.78389 -22.09961 -21.84949 -21.14754 -20.42687 -19.48628 -18.80463 -18.00450 -17.56337 -17.16548 -16.65126 -16.32469 -16.12519 -15.85755 -15.60453 -15.46470 -15.08737 -15.01826 -14.59934 -14.31947 -14.12683 -13.94641 -13.77827 -13.54378 -13.34974 -12.85678 -12.80168 -12.50848 -12.29349 -12.12544 -12.05938 -12.01440 -11.80671 -11.74620 -11.63056 -11.57216 -10.84806 -10.70457 -10.63685 -10.41423 -9.77082 -9.55595 -8.85110 -7.83029 -5.17893 1.47126 1.48726 1.49519 1.57654 2.04474 2.31363 2.41214 2.50995 3.33529 3.36222 3.67898 3.68995 3.82542 3.84343 3.93378 4.07889 4.11471 4.14124 4.24189 4.33089 4.50694 4.61843 4.66584 4.76137 4.82225 4.88129 4.89603 5.01267 5.02263 5.05271 5.11691 5.20035 5.43797 5.44957 5.48469 5.64328 5.73658 5.78490 5.83454 6.06317 6.20236 6.76702 6.97373 7.12625 7.51982 7.77506 7.78973 8.43723 9.27260 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003972 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.056898 B = 7047.348049 C = 7978.710382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.618 5.618 10 C 0.190 3.810 11 C -0.134 4.134 12 C 0.152 3.848 13 H 0.082 0.918 14 N -0.706 5.706 15 C 0.523 3.477 16 O -0.553 6.553 17 C 0.150 3.850 18 H 0.105 0.895 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.132 4.132 22 C 0.106 3.894 23 N -0.618 5.618 24 C 0.683 3.317 25 N -0.849 5.849 26 O -0.603 6.603 27 C 0.126 3.874 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.010 0.990 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.401 0.599 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.410 0.590 43 H 0.417 0.583 44 H 0.025 0.975 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -15.676 19.892 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.345 5.345 10 C 0.065 3.935 11 C -0.173 4.173 12 C 0.045 3.955 13 H 0.100 0.900 14 N -0.357 5.357 15 C 0.310 3.690 16 O -0.429 6.429 17 C 0.042 3.958 18 H 0.123 0.877 19 C -0.160 4.160 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.015 4.015 23 N -0.358 5.358 24 C 0.383 3.617 25 N -0.421 5.421 26 O -0.482 6.482 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.235 0.765 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.243 0.757 43 H 0.249 0.751 44 H 0.042 0.958 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.105 -15.860 18.740 24.550 hybrid contribution 0.084 1.003 -0.292 1.048 sum 0.189 -14.857 18.448 23.687 Atomic orbital electron populations 1.70160 1.06047 1.25274 1.58126 1.25552 0.96609 1.00579 1.02447 0.85102 0.77659 0.79313 0.77359 1.21619 1.21610 1.19667 1.19373 0.90731 0.83742 1.43314 0.90811 1.44698 1.02355 1.00434 1.87014 1.20903 0.83508 0.90793 0.98320 1.23049 0.96537 0.96104 1.01563 1.21689 0.95557 0.97863 0.80395 0.89953 1.45650 1.49431 1.34396 1.06268 1.20381 0.79067 0.79587 0.89925 1.90626 1.44072 1.35258 1.72987 1.20993 0.98785 0.86681 0.89370 0.87734 1.21827 0.93315 1.01965 0.98858 1.21515 1.03425 0.98169 0.91864 1.21942 0.95761 0.96555 1.02750 1.22046 0.98588 1.03749 0.77084 1.47093 1.67569 1.13020 1.08103 1.16429 0.78764 0.81518 0.85030 1.42931 1.70762 1.16107 1.12308 1.91201 1.62441 1.79972 1.14563 1.22006 0.95336 0.85796 0.96916 0.94298 0.95912 0.97219 0.89539 0.89823 0.76457 0.93003 0.90863 0.90200 0.89823 0.92762 0.87272 0.87768 0.88823 0.75693 0.75079 0.95755 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.49 10.31 21.65 0.22 -56.26 16 2 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 3 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -14.01 10.28 84.03 0.86 -13.14 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -33.02 3.39 -691.97 -2.35 -35.37 16 10 C 0.19 9.47 5.36 86.73 0.47 9.93 16 11 C -0.13 -5.26 6.55 31.78 0.21 -5.05 16 12 C 0.15 6.24 3.43 46.38 0.16 6.40 16 13 H 0.08 3.57 7.54 -2.39 -0.02 3.55 16 14 N -0.71 -26.59 5.19 -435.95 -2.26 -28.86 16 15 C 0.52 19.47 4.80 87.66 0.42 19.89 16 16 O -0.55 -25.16 13.54 21.44 0.29 -24.87 16 17 C 0.15 3.94 3.31 44.23 0.15 4.09 16 18 H 0.10 2.31 7.92 -2.39 -0.02 2.30 16 19 C -0.12 -2.82 5.33 30.67 0.16 -2.65 16 20 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 21 C -0.13 -1.35 6.08 30.67 0.19 -1.16 16 22 C 0.11 1.12 6.35 86.36 0.55 1.67 16 23 N -0.62 -13.50 2.97 -817.08 -2.43 -15.93 16 24 C 0.68 18.67 8.40 179.05 1.50 20.18 16 25 N -0.85 -13.60 8.74 -184.75 -1.61 -15.22 16 26 O -0.60 -23.82 12.28 20.50 0.25 -23.57 16 27 C 0.13 5.93 6.93 86.86 0.60 6.53 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.02 1.22 7.40 -2.39 -0.02 1.20 16 30 H 0.01 0.54 7.49 -2.38 -0.02 0.52 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.08 3.05 8.14 -2.38 -0.02 3.04 16 33 H 0.40 14.09 8.51 -92.71 -0.79 13.30 16 34 H 0.05 1.47 8.01 -2.39 -0.02 1.45 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.54 5.73 -2.39 -0.01 0.53 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.41 3.20 6.41 -92.71 -0.59 2.60 16 43 H 0.42 6.22 8.93 -92.71 -0.83 5.39 16 44 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -83.05 351.00 -1.13 -84.18 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -1.18 Total: 25.35 kcal Atomic # 6 Polarization: 36.50 SS G_CDS: 5.91 Total: 42.42 kcal Atomic # 7 Polarization: -143.21 SS G_CDS: -8.43 Total: -151.64 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: 0.54 Total: -48.44 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -83.05 -1.13 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015975022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.036 kcal (2) G-P(sol) polarization free energy of solvation -83.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds