Wall clock time and date at job start Fri Apr 10 2020 18:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48502 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47245 * 300.00125 * 3 2 1 6 6 H 1.48495 * 109.47022 * 59.99861 * 3 2 1 7 7 C 1.38810 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99844 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.47411 * 125.64721 * 0.04112 * 9 7 2 11 11 C 1.55128 * 104.94382 * 203.96754 * 10 9 7 12 12 C 1.55149 * 101.48219 * 323.22463 * 11 10 9 13 13 H 1.09009 * 110.72104 * 276.82606 * 12 11 10 14 14 N 1.46503 * 110.72160 * 153.73437 * 12 11 10 15 15 C 1.34776 * 120.00326 * 157.43484 * 14 12 11 16 16 O 1.21281 * 120.00105 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99798 * 179.97438 * 15 14 12 18 18 H 1.08997 * 109.70583 * 357.28086 * 17 15 14 19 19 C 1.53192 * 109.58403 * 117.63799 * 17 15 14 20 20 C 1.53046 * 109.33776 * 174.43772 * 19 17 15 21 21 C 1.53036 * 109.53933 * 298.61324 * 20 19 17 22 22 C 1.53198 * 109.30943 * 61.36536 * 21 20 19 23 23 N 1.46922 * 108.77823 * 305.36767 * 22 21 20 24 24 C 1.34775 * 120.63111 * 233.63072 * 23 22 21 25 25 N 1.34784 * 119.99657 * 355.27840 * 24 23 22 26 26 O 1.21586 * 120.00207 * 175.27918 * 24 23 22 27 27 C 1.47022 * 125.64623 * 180.02562 * 9 7 2 28 28 H 0.97000 * 119.99472 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.37137 * 322.93397 * 10 9 7 30 30 H 1.09004 * 110.36821 * 85.14932 * 10 9 7 31 31 H 1.09002 * 111.15970 * 205.13423 * 11 10 9 32 32 H 1.09002 * 110.93476 * 81.21594 * 11 10 9 33 33 H 0.97002 * 119.99497 * 337.43756 * 14 12 11 34 34 H 1.08997 * 109.50043 * 54.46911 * 19 17 15 35 35 H 1.09001 * 109.49720 * 294.40430 * 19 17 15 36 36 H 1.08997 * 109.45976 * 58.63846 * 20 19 17 37 37 H 1.09009 * 109.45750 * 178.60949 * 20 19 17 38 38 H 1.08998 * 109.49725 * 181.31345 * 21 20 19 39 39 H 1.09000 * 109.50088 * 301.41898 * 21 20 19 40 40 H 1.09001 * 109.58467 * 65.15071 * 22 21 20 41 41 H 1.08998 * 109.58452 * 185.42841 * 22 21 20 42 42 H 0.97001 * 119.99900 * 4.95141 * 25 24 23 43 43 H 0.97002 * 119.99979 * 184.95380 * 25 24 23 44 44 H 1.08993 * 109.88710 * 59.55462 * 27 9 7 45 45 H 1.09005 * 110.00666 * 298.46138 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0009 11 6 -0.4050 -3.9353 0.6081 12 6 0.7783 -4.7524 0.0255 13 1 0.5480 -5.1001 -0.9816 14 7 1.1082 -5.8815 0.8987 15 6 1.7581 -6.9517 0.4000 16 8 2.0703 -6.9799 -0.7716 17 6 2.0979 -8.1129 1.2985 18 1 1.7862 -7.8914 2.3191 19 6 1.3795 -9.3722 0.8039 20 6 1.8354 -10.5747 1.6337 21 6 3.3418 -10.7777 1.4559 22 6 4.0832 -9.5346 1.9580 23 7 3.5478 -8.3535 1.2675 24 6 4.3702 -7.5066 0.6173 25 7 5.7049 -7.6855 0.6757 26 8 3.9083 -6.5812 -0.0219 27 6 1.9317 -3.7275 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5994 -1.7590 0.6148 30 1 -0.5273 -2.4846 -1.0192 31 1 -1.3606 -4.3372 0.2714 32 1 -0.3585 -3.9022 1.6966 33 1 0.8588 -5.8588 1.8359 34 1 1.6220 -9.5412 -0.2452 35 1 0.3026 -9.2429 0.9121 36 1 1.6149 -10.3944 2.6858 37 1 1.3069 -11.4677 1.2997 38 1 3.6617 -11.6482 2.0286 39 1 3.5659 -10.9334 0.4006 40 1 3.9332 -9.4289 3.0324 41 1 5.1477 -9.6335 1.7456 42 1 6.0707 -8.4635 1.1250 43 1 6.2996 -7.0363 0.2685 44 1 2.5577 -3.8511 0.8831 45 1 2.5302 -3.8660 -0.9010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015975023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:54 Heat of formation + Delta-G solvation = -12.835936 kcal Electronic energy + Delta-G solvation = -27207.295893 eV Core-core repulsion = 23454.456494 eV Total energy + Delta-G solvation = -3752.839399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94701 -38.70535 -37.50975 -36.80624 -33.93995 -33.65050 -32.58216 -31.84008 -31.16465 -28.99730 -27.06446 -25.73972 -24.49017 -23.77219 -21.73271 -20.85227 -20.30569 -19.56691 -19.49527 -18.40813 -17.02763 -16.84253 -16.35155 -15.78132 -15.46095 -15.02526 -14.80209 -14.50760 -14.45537 -14.27781 -13.97590 -13.74286 -13.43107 -13.20147 -12.70194 -12.64638 -12.19573 -11.79543 -11.74561 -11.48041 -11.46101 -11.20400 -11.03841 -10.95902 -10.78017 -10.69754 -10.30676 -10.00561 -9.67771 -9.62924 -9.61874 -9.40543 -9.07682 -8.76587 -8.54872 -8.26519 -6.68947 -5.54536 -2.94525 2.42433 3.16883 3.42718 3.47049 3.52441 3.55413 3.60069 4.07441 4.41160 4.47133 4.56331 4.60778 4.75842 4.89549 5.01204 5.09027 5.16747 5.38913 5.48879 5.52055 5.54953 5.60212 5.67043 5.72309 5.73860 5.98507 6.02614 6.03284 6.21781 6.40974 6.57628 6.60988 6.65537 6.84346 6.94005 7.09706 7.31424 7.60586 7.75534 7.80331 7.92041 8.05889 8.46666 8.65152 8.92947 9.34398 9.95266 10.60919 11.49936 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.003433 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.995635 B = 8153.429392 C = 8969.947623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.016 4.016 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.212 4.212 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.154 3.846 11 C -0.151 4.151 12 C 0.141 3.859 13 H 0.086 0.914 14 N -0.719 5.719 15 C 0.524 3.476 16 O -0.502 6.502 17 C 0.148 3.852 18 H 0.083 0.917 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.138 4.138 22 C 0.115 3.885 23 N -0.621 5.621 24 C 0.692 3.308 25 N -0.871 5.871 26 O -0.534 6.534 27 C 0.137 3.863 28 H 0.250 0.750 29 H 0.109 0.891 30 H 0.013 0.987 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.391 0.609 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.389 0.611 43 H 0.413 0.587 44 H 0.023 0.977 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -25.256 8.346 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.211 4.211 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.029 3.971 11 C -0.190 4.190 12 C 0.037 3.963 13 H 0.104 0.896 14 N -0.371 5.371 15 C 0.308 3.692 16 O -0.375 6.375 17 C 0.040 3.960 18 H 0.101 0.899 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.176 4.176 22 C -0.008 4.008 23 N -0.363 5.363 24 C 0.392 3.608 25 N -0.442 5.442 26 O -0.407 6.407 27 C 0.010 3.990 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.246 0.754 44 H 0.041 0.959 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.112 -24.450 7.047 25.953 hybrid contribution 0.977 0.594 0.557 1.272 sum 6.089 -23.855 7.604 25.768 Atomic orbital electron populations 1.69795 1.04813 1.24430 1.58494 1.24770 0.95750 0.97585 1.02956 0.85988 0.78676 0.83701 0.77142 1.20597 1.21831 1.21862 1.19163 0.90573 0.82485 1.41891 0.90541 1.44504 1.01896 0.99967 1.86884 1.21941 0.84988 0.91845 0.98343 1.23356 0.96077 0.99306 1.00239 1.21927 0.95583 0.84859 0.93957 0.89554 1.45900 1.60107 1.18145 1.12908 1.19657 0.77719 0.82964 0.88842 1.90700 1.49410 1.79652 1.17730 1.21014 0.80291 0.95284 0.99404 0.89895 1.21858 1.00016 0.92991 1.01430 1.21495 0.95529 0.98076 1.00312 1.21952 0.95993 0.97269 1.02376 1.21619 0.97713 0.84745 0.96726 1.47011 1.05370 1.26649 1.57281 1.16113 0.81643 0.83174 0.79918 1.43217 1.05758 1.30441 1.64809 1.91313 1.73095 1.32928 1.43328 1.21500 0.93829 0.85127 0.98499 0.93930 0.87362 0.96887 0.91931 0.91893 0.77569 0.90250 0.90243 0.91496 0.91179 0.90584 0.91231 0.91192 0.90322 0.78127 0.75446 0.95874 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 10.09 55.49 0.56 -27.42 16 2 C -0.02 -0.47 5.49 -17.43 -0.10 -0.57 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.21 -6.37 10.27 -15.06 -0.15 -6.52 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.84 16 9 N -0.61 -16.95 3.40 -169.94 -0.58 -17.52 16 10 C 0.15 3.95 5.89 -2.42 -0.01 3.94 16 11 C -0.15 -2.98 6.73 -24.47 -0.16 -3.14 16 12 C 0.14 2.91 3.27 -66.10 -0.22 2.69 16 13 H 0.09 1.91 7.62 -51.92 -0.40 1.51 16 14 N -0.72 -12.00 5.12 -52.03 -0.27 -12.26 16 15 C 0.52 8.87 4.81 -10.99 -0.05 8.82 16 16 O -0.50 -10.82 13.58 -20.03 -0.27 -11.09 16 17 C 0.15 1.74 3.31 -68.71 -0.23 1.51 16 18 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 19 C -0.12 -1.17 5.33 -26.61 -0.14 -1.31 16 20 C -0.12 -0.73 5.88 -26.69 -0.16 -0.88 16 21 C -0.14 -0.79 6.08 -26.61 -0.16 -0.95 16 22 C 0.12 0.75 6.39 -3.71 -0.02 0.72 16 23 N -0.62 -6.99 2.97 -172.17 -0.51 -7.50 16 24 C 0.69 10.09 8.40 -86.91 -0.73 9.36 16 25 N -0.87 -8.59 8.78 27.64 0.24 -8.35 16 26 O -0.53 -10.92 12.28 -20.30 -0.25 -11.17 16 27 C 0.14 3.42 7.00 -3.07 -0.02 3.39 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.11 3.05 5.87 -51.93 -0.31 2.74 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.17 8.00 -51.93 -0.42 0.75 16 33 H 0.39 5.33 8.39 -40.82 -0.34 4.99 16 34 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.36 5.64 -51.93 -0.29 0.07 16 42 H 0.39 2.38 6.32 -40.82 -0.26 2.12 16 43 H 0.41 3.97 8.93 -40.82 -0.36 3.60 16 44 H 0.02 0.59 8.03 -51.93 -0.42 0.18 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -38.84 350.11 -9.95 -48.79 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.97 Total: 6.09 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: -2.16 Total: 17.06 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -0.55 Total: -73.06 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.52 Total: -22.26 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.84 -9.95 -48.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015975023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.957 kcal (2) G-P(sol) polarization free energy of solvation -38.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds