Wall clock time and date at job start Fri Apr 10 2020 18:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47456 * 240.00065 * 3 2 1 5 5 H 1.48504 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47298 * 119.99893 * 3 2 1 7 7 C 1.38804 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00637 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00518 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.87830 * 325.70008 * 10 9 7 12 12 C 1.55153 * 111.00585 * 89.57890 * 10 9 7 13 13 C 1.54323 * 102.94066 * 153.61560 * 12 10 9 14 14 N 1.47022 * 107.27159 * 337.80558 * 13 12 10 15 15 C 1.34776 * 125.64791 * 178.98631 * 14 13 12 16 16 O 1.21278 * 120.00334 * 174.90029 * 15 14 13 17 17 C 1.50705 * 119.99692 * 354.89551 * 15 14 13 18 18 H 1.08995 * 109.50078 * 329.25039 * 17 15 14 19 19 C 1.53045 * 109.49663 * 209.18112 * 17 15 14 20 20 C 1.53030 * 109.53821 * 178.71483 * 19 17 15 21 21 C 1.53193 * 109.33792 * 61.32304 * 20 19 17 22 22 N 1.46928 * 108.77619 * 305.38025 * 21 20 19 23 23 C 1.34779 * 120.62585 * 233.63250 * 22 21 20 24 24 N 1.34770 * 120.00787 * 4.93813 * 23 22 21 25 25 O 1.21587 * 119.99348 * 184.94355 * 23 22 21 26 26 C 1.46922 * 118.74109 * 53.60414 * 22 21 20 27 27 C 1.47420 * 108.70157 * 358.94295 * 14 13 12 28 28 H 0.96998 * 119.99888 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99244 * 359.97438 * 9 7 2 30 30 H 1.08993 * 110.72299 * 271.98499 * 12 10 9 31 31 H 1.09008 * 110.71693 * 35.25152 * 12 10 9 32 32 H 1.08997 * 109.88029 * 97.22674 * 13 12 10 33 33 H 1.09006 * 109.88192 * 218.23842 * 13 12 10 34 34 H 1.08995 * 109.45981 * 298.71205 * 19 17 15 35 35 H 1.09000 * 109.45235 * 58.66707 * 19 17 15 36 36 H 1.09000 * 109.47633 * 301.36976 * 20 19 17 37 37 H 1.09005 * 109.52426 * 181.29835 * 20 19 17 38 38 H 1.09001 * 109.59090 * 185.58702 * 21 20 19 39 39 H 1.09005 * 109.58777 * 65.16206 * 21 20 19 40 40 H 0.97005 * 119.99572 * 355.02606 * 24 23 22 41 41 H 0.96992 * 120.00355 * 175.01335 * 24 23 22 42 42 H 1.08993 * 109.58850 * 186.60907 * 26 22 21 43 43 H 1.08999 * 109.70321 * 66.24895 * 26 22 21 44 44 H 1.09000 * 110.36872 * 265.28147 * 27 14 13 45 45 H 1.09006 * 110.36613 * 142.96563 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9810 -3.5726 -0.5745 12 6 2.3454 -4.1331 1.4478 13 6 2.4564 -5.6645 1.2924 14 7 1.7414 -6.0312 0.0612 15 6 1.6238 -7.2780 -0.4371 16 8 0.9319 -7.4783 -1.4128 17 6 2.3522 -8.4231 0.2181 18 1 3.2778 -8.0584 0.6634 19 6 2.6756 -9.4897 -0.8307 20 6 3.4434 -10.6383 -0.1727 21 6 2.5705 -11.2758 0.9129 22 7 2.1359 -10.2276 1.8463 23 6 2.3475 -10.3572 3.1711 24 7 3.0500 -11.4065 3.6420 25 8 1.9044 -9.5274 3.9414 26 6 1.4669 -9.0354 1.3081 27 6 1.1735 -4.8096 -0.5374 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 3.2827 -3.7136 1.8130 31 1 1.5205 -3.8715 2.1106 32 1 3.5042 -5.9540 1.2129 33 1 1.9996 -6.1583 2.1502 34 1 1.7485 -9.8712 -1.2584 35 1 3.2853 -9.0498 -1.6198 36 1 4.3590 -10.2532 0.2763 37 1 3.6937 -11.3870 -0.9244 38 1 3.1475 -12.0280 1.4509 39 1 1.6981 -11.7409 0.4539 40 1 3.3415 -12.1060 3.0364 41 1 3.2643 -11.4622 4.5863 42 1 1.3158 -8.3093 2.1068 43 1 0.5036 -9.3155 0.8819 44 1 0.1402 -4.6754 -0.2176 45 1 1.2317 -4.8576 -1.6248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019113689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:02 Heat of formation + Delta-G solvation = -73.447706 kcal Electronic energy + Delta-G solvation = -26306.518728 eV Core-core repulsion = 22551.051006 eV Total energy + Delta-G solvation = -3755.467723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78816 -40.86677 -39.02078 -37.95846 -35.96093 -35.06811 -33.48495 -33.31609 -32.19882 -31.00769 -29.34269 -26.47773 -26.10327 -25.01993 -23.82589 -22.54618 -21.65957 -20.70029 -20.06335 -19.39382 -19.31602 -18.23672 -17.92038 -17.40561 -16.74729 -16.44113 -16.11777 -15.90362 -15.78864 -15.38918 -15.32445 -15.00187 -14.64395 -14.37815 -14.27028 -14.15450 -13.92321 -13.67338 -13.31912 -13.15983 -13.02231 -12.67615 -12.53146 -12.39287 -12.18056 -12.04917 -11.94929 -11.77681 -11.70083 -11.61505 -11.35102 -10.94542 -10.89560 -10.69924 -9.76233 -9.64131 -9.06648 -7.95546 -5.26296 1.36680 1.48783 1.51836 1.57742 1.72258 1.96766 2.12785 2.56799 3.19769 3.32944 3.43689 3.65484 3.68772 3.74377 3.88443 3.98804 4.03095 4.10805 4.19114 4.24860 4.27192 4.47761 4.48645 4.54134 4.62260 4.72157 4.74678 4.81519 4.88445 4.96577 5.03762 5.11317 5.16137 5.20190 5.38635 5.39846 5.40889 5.52293 5.82175 6.02543 6.24743 6.46849 6.91075 7.02783 7.31398 7.60880 8.02438 8.26774 9.27660 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.002781 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.434761 B =10065.514047 C =10658.920883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.145 4.145 13 C 0.109 3.891 14 N -0.611 5.611 15 C 0.530 3.470 16 O -0.579 6.579 17 C -0.103 4.103 18 H 0.107 0.893 19 C -0.102 4.102 20 C -0.124 4.124 21 C 0.103 3.897 22 N -0.623 5.623 23 C 0.703 3.297 24 N -0.845 5.845 25 O -0.643 6.643 26 C 0.147 3.853 27 C 0.107 3.893 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.413 0.587 41 H 0.420 0.580 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.621 -29.517 3.556 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.186 4.186 13 C -0.013 4.013 14 N -0.344 5.344 15 C 0.319 3.681 16 O -0.458 6.458 17 C -0.126 4.126 18 H 0.125 0.875 19 C -0.140 4.140 20 C -0.162 4.162 21 C -0.018 4.018 22 N -0.360 5.360 23 C 0.402 3.598 24 N -0.417 5.417 25 O -0.525 6.525 26 C 0.022 3.978 27 C -0.017 4.017 28 H 0.060 0.940 29 H 0.206 0.794 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.246 0.754 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.058 -28.985 3.372 31.206 hybrid contribution -0.337 1.199 0.036 1.246 sum 10.722 -27.786 3.408 29.977 Atomic orbital electron populations 1.69826 1.06752 1.26252 1.59206 1.25605 0.96346 1.01254 1.03478 0.85184 0.77138 0.78965 0.78281 1.20330 1.22471 1.20121 1.19587 0.91614 0.84717 1.41480 0.90020 1.42412 1.05444 1.00575 1.88390 1.21436 0.94111 0.84197 0.94511 0.91529 1.23226 1.02801 0.93335 0.99245 1.22156 0.97654 0.95714 0.85814 1.48575 1.53477 1.06145 1.26226 1.20746 0.80995 0.82816 0.83520 1.90675 1.41917 1.84042 1.29212 1.21637 0.99720 0.93488 0.97729 0.87485 1.21405 1.01495 0.94930 0.96203 1.21916 0.98194 0.97705 0.98414 1.22036 0.99641 0.89204 0.90964 1.47173 1.62510 1.21671 1.04640 1.16083 0.79043 0.82499 0.82154 1.42927 1.59822 1.24530 1.14415 1.90962 1.57967 1.46408 1.57176 1.21055 0.94119 0.87427 0.95166 1.22253 0.97257 0.84180 0.97996 0.93985 0.79413 0.89530 0.92178 0.88932 0.90624 0.91438 0.91438 0.90617 0.87419 0.86930 0.90080 0.75354 0.74631 0.90333 0.91514 0.92743 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.22 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.19 9.97 84.03 0.84 -12.36 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -36.48 5.26 -316.39 -1.66 -38.15 16 10 C 0.17 6.53 3.70 46.38 0.17 6.70 16 11 H 0.07 2.57 8.11 -2.39 -0.02 2.55 16 12 C -0.15 -4.74 6.65 31.78 0.21 -4.52 16 13 C 0.11 2.84 6.27 86.73 0.54 3.38 16 14 N -0.61 -18.70 3.33 -811.80 -2.70 -21.40 16 15 C 0.53 15.65 6.91 87.66 0.61 16.25 16 16 O -0.58 -21.31 16.49 -3.02 -0.05 -21.36 16 17 C -0.10 -2.10 2.21 -11.46 -0.03 -2.12 16 18 H 0.11 1.92 7.11 -2.39 -0.02 1.90 16 19 C -0.10 -1.61 4.73 30.62 0.14 -1.46 16 20 C -0.12 -0.92 6.08 30.67 0.19 -0.73 16 21 C 0.10 0.72 6.43 86.36 0.56 1.28 16 22 N -0.62 -9.80 2.97 -836.90 -2.49 -12.28 16 23 C 0.70 13.49 8.57 179.06 1.53 15.02 16 24 N -0.85 -7.36 8.79 -184.75 -1.62 -8.99 16 25 O -0.64 -19.48 16.61 -3.99 -0.07 -19.55 16 26 C 0.15 3.11 5.69 86.36 0.49 3.60 16 27 C 0.11 3.94 6.52 86.85 0.57 4.51 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.37 20.37 7.74 -92.71 -0.72 19.66 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.09 1.92 7.65 -2.39 -0.02 1.90 16 33 H 0.08 1.88 7.61 -2.38 -0.02 1.87 16 34 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.11 0.01 5.57 -2.39 -0.01 0.00 16 39 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.41 0.59 6.29 -92.70 -0.58 0.00 16 41 H 0.42 3.02 8.93 -92.71 -0.83 2.19 16 42 H 0.08 2.02 6.50 -2.39 -0.02 2.01 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 2.15 8.00 -2.39 -0.02 2.13 16 45 H 0.06 2.49 8.09 -2.38 -0.02 2.47 16 Total: -1.00 -78.26 359.23 -1.09 -79.35 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.10 Total: 28.10 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.29 Total: 25.78 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -8.19 Total: -140.04 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.12 Total: -40.91 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -78.26 -1.09 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019113689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.902 kcal (2) G-P(sol) polarization free energy of solvation -78.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds