Wall clock time and date at job start Fri Apr 10 2020 18:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47052 * 125.41122 * 2 1 4 4 C 1.54106 * 103.86660 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.66847 * 241.34980 * 4 3 2 6 6 C 1.50691 * 110.54998 * 118.59371 * 4 3 2 7 7 O 1.21284 * 120.00390 * 264.10372 * 6 4 3 8 8 N 1.34774 * 120.00088 * 84.10695 * 6 4 3 9 9 C 1.46504 * 120.00495 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47269 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.58803 * 60.36143 * 10 9 8 12 12 C 1.53194 * 109.58456 * 180.78630 * 10 9 8 13 13 C 1.53047 * 109.31204 * 174.42324 * 12 10 9 14 14 C 1.53037 * 109.53394 * 298.62926 * 13 12 10 15 15 C 1.53199 * 109.31204 * 61.37094 * 14 13 12 16 16 N 1.46921 * 109.58925 * 300.07042 * 10 9 8 17 17 C 1.36939 * 120.62904 * 6.33751 * 16 10 9 18 18 H 1.08007 * 119.99863 * 328.86238 * 17 16 10 19 19 C 1.38809 * 120.00485 * 148.86566 * 17 16 10 20 20 N 1.31618 * 119.99705 * 345.46703 * 19 17 16 21 21 Si 1.86796 * 120.00095 * 165.45973 * 19 17 16 22 22 H 1.48504 * 109.47176 * 90.00173 * 21 19 17 23 23 H 1.48499 * 109.47526 * 210.00187 * 21 19 17 24 24 H 1.48496 * 109.47443 * 330.00485 * 21 19 17 25 25 N 1.47051 * 103.85853 * 359.97438 * 4 3 2 26 26 C 1.33945 * 125.41290 * 180.02562 * 2 1 3 27 27 O 1.21589 * 123.04440 * 359.97438 * 26 2 1 28 28 H 1.09006 * 109.46787 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47376 * 299.97294 * 1 2 3 30 30 H 1.08996 * 109.46745 * 59.97856 * 1 2 3 31 31 H 1.09007 * 110.54497 * 61.40208 * 3 2 1 32 32 H 1.09002 * 110.54840 * 298.59342 * 3 2 1 33 33 H 0.97005 * 120.00349 * 359.97438 * 8 6 4 34 34 H 1.08994 * 109.47178 * 59.99369 * 9 8 6 35 35 H 1.09002 * 109.46377 * 300.00032 * 9 8 6 36 36 H 1.09008 * 109.49541 * 294.37307 * 12 10 9 37 37 H 1.08994 * 109.50159 * 54.43880 * 12 10 9 38 38 H 1.08996 * 109.46249 * 58.65556 * 13 12 10 39 39 H 1.09003 * 109.45601 * 178.62880 * 13 12 10 40 40 H 1.09004 * 109.49201 * 181.31326 * 14 13 12 41 41 H 1.08995 * 109.50440 * 301.41599 * 14 13 12 42 42 H 1.09000 * 109.58359 * 185.57478 * 15 14 13 43 43 H 1.09000 * 109.58519 * 65.14843 * 15 14 13 44 44 H 0.96999 * 119.99508 * 179.97438 * 20 19 17 45 45 H 0.97005 * 125.41183 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7505 0.6326 -0.0007 5 1 4.2882 0.9459 0.8942 6 6 4.4900 1.0668 -1.2398 7 8 4.5379 0.3345 -2.2054 8 7 5.0983 2.2689 -1.2750 9 6 5.8168 2.6914 -2.4798 10 6 6.4097 4.0843 -2.2580 11 1 7.1050 4.0561 -1.4191 12 6 7.1451 4.5368 -3.5234 13 6 7.6154 5.9823 -3.3459 14 6 6.4030 6.8932 -3.1401 15 6 5.6591 6.4675 -1.8703 16 7 5.3304 5.0391 -1.9714 17 6 4.0416 4.6065 -1.8072 18 1 3.6922 3.7351 -2.3413 19 6 3.1841 5.2878 -0.9543 20 7 3.6667 6.1595 -0.0944 21 14 1.3452 4.9676 -1.0273 22 1 0.9971 3.8659 -0.0943 23 1 0.6124 6.1983 -0.6353 24 1 0.9640 4.5839 -2.4103 25 7 3.5538 -0.8247 -0.0003 26 6 2.2411 -1.0916 -0.0005 27 8 1.7947 -2.2226 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 2.1405 1.7934 0.8962 32 1 2.1406 1.7934 -0.8962 33 1 5.0598 2.8549 -0.5029 34 1 5.1267 2.7206 -3.3229 35 1 6.6188 1.9841 -2.6911 36 1 8.0074 3.8919 -3.6933 37 1 6.4709 4.4753 -4.3777 38 1 8.2700 6.0471 -2.4769 39 1 8.1602 6.2987 -4.2354 40 1 6.7370 7.9257 -3.0370 41 1 5.7356 6.8102 -3.9978 42 1 4.7415 7.0476 -1.7725 43 1 6.2946 6.6356 -1.0008 44 1 3.0674 6.6358 0.5013 45 1 4.2621 -1.4875 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024595571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:48 Heat of formation + Delta-G solvation = -44.829575 kcal Electronic energy + Delta-G solvation = -27540.561347 eV Core-core repulsion = 23786.334600 eV Total energy + Delta-G solvation = -3754.226747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42363 -40.50017 -39.24243 -37.40126 -35.74841 -35.13162 -34.82963 -32.50698 -31.65495 -30.44229 -28.40130 -27.48443 -26.42837 -24.59326 -23.76435 -22.27674 -21.65975 -21.45144 -20.65498 -19.04103 -18.71270 -17.99626 -17.57161 -17.16799 -16.90948 -16.39140 -16.08002 -15.67470 -15.49752 -15.20993 -15.15724 -14.89008 -14.71905 -14.54842 -14.46206 -14.01684 -13.77226 -13.52181 -13.34413 -13.28457 -12.98805 -12.75718 -12.63372 -12.48825 -12.27469 -12.00482 -11.76535 -11.56733 -11.50523 -11.33543 -11.07564 -10.98494 -10.44697 -10.37970 -9.85038 -9.65404 -8.49178 -7.75491 -5.22697 1.36133 1.44781 1.56571 1.60183 1.64846 1.88570 2.26291 2.55726 2.87731 3.27995 3.40044 3.59815 3.69767 3.85746 4.03937 4.07990 4.25025 4.30799 4.43742 4.45582 4.48032 4.58244 4.62323 4.69113 4.76748 4.79964 4.85490 4.90688 5.03085 5.17908 5.25182 5.30985 5.40463 5.49896 5.55739 5.61591 5.67784 5.81378 5.87499 6.00877 6.28274 6.50854 6.69061 7.25031 7.28491 7.41607 7.94941 8.49992 9.28912 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.005147 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.139011 B = 5438.813146 C = 6805.420298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.114 3.886 5 H 0.154 0.846 6 C 0.498 3.502 7 O -0.583 6.583 8 N -0.681 5.681 9 C 0.139 3.861 10 C 0.161 3.839 11 H 0.038 0.962 12 C -0.124 4.124 13 C -0.103 4.103 14 C -0.137 4.137 15 C 0.179 3.821 16 N -0.600 5.600 17 C -0.239 4.239 18 H 0.061 0.939 19 C -0.026 4.026 20 N -0.921 5.921 21 Si 0.924 3.076 22 H -0.252 1.252 23 H -0.307 1.307 24 H -0.294 1.294 25 N -0.708 5.708 26 C 0.697 3.303 27 O -0.629 6.629 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.004 0.996 44 H 0.248 0.752 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -3.115 1.457 4.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.375 5.375 3 C -0.019 4.019 4 C 0.004 3.996 5 H 0.171 0.829 6 C 0.282 3.718 7 O -0.464 6.464 8 N -0.332 5.332 9 C 0.015 3.985 10 C 0.055 3.945 11 H 0.056 0.944 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.177 4.177 15 C 0.054 3.946 16 N -0.325 5.325 17 C -0.369 4.369 18 H 0.079 0.921 19 C -0.223 4.223 20 N -0.567 5.567 21 Si 0.753 3.247 22 H -0.176 1.176 23 H -0.234 1.234 24 H -0.220 1.220 25 N -0.368 5.368 26 C 0.397 3.603 27 O -0.511 6.511 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.167 -4.065 0.912 5.233 hybrid contribution -0.946 0.430 0.095 1.043 sum 2.221 -3.635 1.007 4.378 Atomic orbital electron populations 1.21634 0.74310 1.03947 1.03108 1.47190 1.07388 1.05437 1.77498 1.22443 0.86153 0.88316 1.04976 1.21941 0.97198 0.81929 0.98546 0.82906 1.20939 0.79558 0.81860 0.89409 1.90682 1.62635 1.55028 1.38057 1.45987 1.51797 1.16779 1.18596 1.21258 0.95011 0.95006 0.87201 1.20871 0.90025 0.87757 0.95855 0.94397 1.21908 0.99735 0.97162 0.97517 1.21338 0.96727 0.94486 1.01461 1.22072 0.97625 0.98802 0.99151 1.20547 0.96836 0.84764 0.92465 1.44229 1.03515 1.01460 1.83304 1.19169 0.87506 1.12043 1.18195 0.92138 1.25440 1.00205 1.00350 0.96256 1.70113 1.33950 1.30199 1.22395 0.85992 0.83418 0.77563 0.77687 1.17640 1.23398 1.22001 1.44772 1.06273 1.07019 1.78753 1.16022 0.82505 0.84471 0.77274 1.90887 1.76766 1.22428 1.61035 0.90051 0.89553 0.91401 0.86288 0.91043 0.74459 0.93867 0.90820 0.90124 0.93108 0.92256 0.91149 0.91981 0.93859 0.93408 0.97796 0.94262 0.71980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 11.22 127.77 1.43 4.04 16 2 N -0.64 -18.61 3.36 -863.44 -2.90 -21.51 16 3 C 0.10 2.86 7.32 86.65 0.63 3.49 16 4 C 0.11 2.94 4.17 44.51 0.19 3.12 16 5 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 6 C 0.50 15.99 6.93 87.65 0.61 16.60 16 7 O -0.58 -23.15 16.60 -3.04 -0.05 -23.20 16 8 N -0.68 -21.64 3.84 -463.07 -1.78 -23.42 16 9 C 0.14 4.57 4.43 86.38 0.38 4.96 16 10 C 0.16 5.36 3.01 44.97 0.14 5.50 16 11 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 12 C -0.12 -3.52 5.37 30.67 0.16 -3.35 16 13 C -0.10 -2.82 5.88 30.62 0.18 -2.64 16 14 C -0.14 -4.57 6.08 30.67 0.19 -4.38 16 15 C 0.18 7.49 5.28 86.37 0.46 7.94 16 16 N -0.60 -24.68 2.97 -675.24 -2.00 -26.68 16 17 C -0.24 -10.68 6.94 84.03 0.58 -10.09 16 18 H 0.06 2.80 5.87 -2.91 -0.02 2.78 16 19 C -0.03 -1.19 4.95 84.86 0.42 -0.77 16 20 N -0.92 -46.09 11.29 21.65 0.24 -45.85 16 21 Si 0.92 38.24 29.46 68.60 2.02 40.27 16 22 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.31 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 N -0.71 -20.00 5.63 -460.36 -2.59 -22.59 16 26 C 0.70 23.43 8.60 179.57 1.54 24.98 16 27 O -0.63 -25.38 17.29 -4.00 -0.07 -25.45 16 28 H 0.08 1.98 7.52 -2.38 -0.02 1.96 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.07 2.24 7.60 -2.39 -0.02 2.23 16 33 H 0.42 13.44 7.37 -92.70 -0.68 12.76 16 34 H 0.04 1.63 7.42 -2.39 -0.02 1.62 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 2.32 6.23 -2.39 -0.01 2.31 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.25 12.36 8.31 -92.71 -0.77 11.59 16 45 H 0.44 11.04 8.96 -92.70 -0.83 10.21 16 Total: -1.00 -64.10 357.07 -0.72 -64.82 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.50 Total: 34.23 kcal Atomic # 6 Polarization: 42.47 SS G_CDS: 6.91 Total: 49.38 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -9.03 Total: -140.04 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.12 Total: -48.65 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.02 Total: 40.27 kcal Total: -64.10 -0.72 -64.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024595571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.986 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds