Wall clock time and date at job start Fri Apr 10 2020 18:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47052 * 125.41262 * 2 1 4 4 C 1.54104 * 103.86417 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.54861 * 118.73857 * 4 3 2 6 6 C 1.50694 * 110.55063 * 241.40761 * 4 3 2 7 7 O 1.21281 * 120.00340 * 98.00038 * 6 4 3 8 8 N 1.34782 * 119.99891 * 277.99884 * 6 4 3 9 9 C 1.46502 * 119.99957 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46813 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.58301 * 300.18245 * 10 9 8 12 12 C 1.53193 * 109.58276 * 179.90074 * 10 9 8 13 13 C 1.53042 * 109.30844 * 185.57720 * 12 10 9 14 14 C 1.53039 * 109.53670 * 61.36801 * 13 12 10 15 15 C 1.53191 * 109.31276 * 298.63261 * 14 13 12 16 16 N 1.46923 * 108.77466 * 54.63707 * 15 14 13 17 17 C 1.36933 * 120.62827 * 126.39370 * 16 15 14 18 18 H 1.08000 * 119.99837 * 228.82417 * 17 16 15 19 19 C 1.38810 * 120.00208 * 48.82394 * 17 16 15 20 20 N 1.31621 * 119.99743 * 189.34978 * 19 17 16 21 21 Si 1.86797 * 120.00173 * 9.35740 * 19 17 16 22 22 H 1.48500 * 109.47543 * 84.64989 * 21 19 17 23 23 H 1.48501 * 109.47280 * 204.65329 * 21 19 17 24 24 H 1.48501 * 109.46884 * 324.65081 * 21 19 17 25 25 N 1.47058 * 103.98790 * 0.07189 * 4 3 2 26 26 C 1.33951 * 125.41013 * 179.97438 * 2 1 3 27 27 O 1.21592 * 123.03830 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.46989 * 89.99837 * 1 2 3 29 29 H 1.08994 * 109.47259 * 209.99904 * 1 2 3 30 30 H 1.08996 * 109.46846 * 330.00329 * 1 2 3 31 31 H 1.08995 * 110.54908 * 61.40614 * 3 2 1 32 32 H 1.09000 * 110.55173 * 298.59140 * 3 2 1 33 33 H 0.97001 * 119.99989 * 359.97438 * 8 6 4 34 34 H 1.08997 * 109.47033 * 299.99905 * 9 8 6 35 35 H 1.08995 * 109.47164 * 60.00096 * 9 8 6 36 36 H 1.08990 * 109.49854 * 305.52872 * 12 10 9 37 37 H 1.09002 * 109.49668 * 65.62688 * 12 10 9 38 38 H 1.09004 * 109.45490 * 181.38672 * 13 12 10 39 39 H 1.08999 * 109.45932 * 301.34138 * 13 12 10 40 40 H 1.08998 * 109.49819 * 58.58353 * 14 13 12 41 41 H 1.09006 * 109.49448 * 178.68331 * 14 13 12 42 42 H 1.08995 * 109.58293 * 174.42460 * 15 14 13 43 43 H 1.09002 * 109.58326 * 294.84751 * 15 14 13 44 44 H 0.97005 * 119.99466 * 179.97438 * 20 19 17 45 45 H 0.97006 * 125.40659 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2868 0.9482 -0.8941 6 6 4.4900 1.0666 1.2398 7 8 4.5704 0.3189 2.1913 8 7 5.0623 2.2858 1.2906 9 6 5.7808 2.7081 2.4955 10 6 6.3302 4.1216 2.2925 11 1 7.0097 4.1306 1.4403 12 6 7.0801 4.5668 3.5519 13 6 7.5064 6.0285 3.3969 14 6 6.2653 6.9094 3.2370 15 6 5.5061 6.4907 1.9740 16 7 5.2190 5.0518 2.0500 17 6 3.9402 4.5866 1.8978 18 1 3.5331 3.8834 2.6093 19 6 3.1671 5.0186 0.8289 20 7 1.8860 4.7206 0.7805 21 14 3.9449 6.0228 -0.5407 22 1 4.5653 5.1092 -1.5335 23 1 2.9015 6.8430 -1.2071 24 1 4.9862 6.9148 0.0296 25 7 3.5569 -0.8253 -0.0008 26 6 2.2411 -1.0917 0.0005 27 8 1.7945 -2.2226 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.1407 1.7933 0.8961 32 1 2.1408 1.7934 -0.8962 33 1 4.9984 2.8837 0.5294 34 1 5.0992 2.7015 3.3460 35 1 6.6059 2.0218 2.6857 36 1 6.4263 4.4685 4.4184 37 1 7.9632 3.9428 3.6892 38 1 8.0617 6.3405 4.2816 39 1 8.1402 6.1304 2.5160 40 1 5.6192 6.7890 4.1065 41 1 6.5685 7.9528 3.1501 42 1 4.5711 7.0469 1.9085 43 1 6.1178 6.6954 1.0953 44 1 1.3457 5.0229 0.0337 45 1 4.2668 -1.4865 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024595573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:52 Heat of formation + Delta-G solvation = -39.575216 kcal Electronic energy + Delta-G solvation = -27647.724715 eV Core-core repulsion = 23893.725814 eV Total energy + Delta-G solvation = -3753.998901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35791 -40.48550 -39.34888 -37.36314 -35.75941 -35.08155 -34.72736 -32.61756 -32.35099 -30.38777 -28.38338 -27.49668 -26.22318 -24.52398 -24.07150 -22.24836 -21.63051 -21.53549 -20.79080 -18.99172 -18.65827 -18.06943 -17.51315 -17.11062 -16.87588 -16.61314 -16.29187 -15.67755 -15.26190 -15.14263 -15.12264 -14.98046 -14.77261 -14.64205 -14.45729 -14.20755 -13.80304 -13.58360 -13.34949 -13.28050 -13.10839 -12.94357 -12.72467 -12.60297 -12.13856 -11.98024 -11.57244 -11.52939 -11.33507 -11.23915 -11.14715 -11.00591 -10.38718 -10.33548 -9.82778 -9.59258 -8.36493 -7.94942 -5.55042 1.41165 1.50734 1.63159 1.65082 1.66737 1.92964 2.29870 2.61129 2.90904 3.25994 3.36729 3.40229 3.69887 3.88695 3.99918 4.10593 4.18644 4.25647 4.42893 4.49658 4.54020 4.61656 4.62213 4.72035 4.77129 4.82457 4.82705 4.88520 4.99397 5.08942 5.14838 5.25206 5.33096 5.39149 5.40431 5.60832 5.62890 5.70711 6.03825 6.15413 6.32090 6.46293 6.69446 7.14528 7.30139 7.44277 7.75164 8.27301 9.19044 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.005024 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.673191 B = 5571.959819 C = 6675.794990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.634 5.634 3 C 0.118 3.882 4 C 0.112 3.888 5 H 0.149 0.851 6 C 0.500 3.500 7 O -0.586 6.586 8 N -0.677 5.677 9 C 0.142 3.858 10 C 0.160 3.840 11 H 0.057 0.943 12 C -0.125 4.125 13 C -0.103 4.103 14 C -0.135 4.135 15 C 0.134 3.866 16 N -0.614 5.614 17 C -0.241 4.241 18 H 0.029 0.971 19 C 0.009 3.991 20 N -0.935 5.935 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.324 1.324 24 H -0.214 1.214 25 N -0.708 5.708 26 C 0.695 3.305 27 O -0.630 6.630 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.411 0.589 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.259 0.741 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 1.541 -3.346 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.372 5.372 3 C -0.006 4.006 4 C 0.002 3.998 5 H 0.166 0.834 6 C 0.285 3.715 7 O -0.467 6.467 8 N -0.326 5.326 9 C 0.018 3.982 10 C 0.055 3.945 11 H 0.074 0.926 12 C -0.164 4.164 13 C -0.141 4.141 14 C -0.174 4.174 15 C 0.009 3.991 16 N -0.341 5.341 17 C -0.371 4.371 18 H 0.047 0.953 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.718 3.282 22 H -0.200 1.200 23 H -0.253 1.253 24 H -0.138 1.138 25 N -0.369 5.369 26 C 0.395 3.605 27 O -0.512 6.512 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.248 0.752 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 8.677 0.517 -2.760 9.120 hybrid contribution -0.303 0.641 -0.666 0.973 sum 8.374 1.158 -3.425 9.121 Atomic orbital electron populations 1.21549 0.74362 1.03381 1.03018 1.47206 1.07387 1.05510 1.77140 1.22245 0.85653 0.87667 1.05044 1.21935 0.97459 0.82017 0.98369 0.83352 1.20895 0.79238 0.82160 0.89234 1.90660 1.62002 1.55047 1.39021 1.45816 1.52863 1.14938 1.18954 1.21222 0.94718 0.95199 0.87070 1.21005 0.89339 0.87491 0.96694 0.92577 1.21900 0.99740 0.97455 0.97327 1.21355 0.96642 0.93993 1.02107 1.22000 0.97481 0.99404 0.98480 1.21672 0.97381 0.84538 0.95490 1.44432 1.03436 1.00925 1.85267 1.18239 0.88553 1.25058 1.05210 0.95336 1.26082 0.95590 0.98636 0.98628 1.69918 1.06431 1.49031 1.32441 0.86979 0.79231 0.81085 0.80885 1.20037 1.25275 1.13764 1.44807 1.06185 1.06895 1.79015 1.16110 0.82505 0.84458 0.77380 1.90873 1.76817 1.22448 1.61076 0.90701 0.91266 0.89777 0.90710 0.87365 0.75157 0.94797 0.90724 0.93577 0.89933 0.91047 0.91343 0.93830 0.91025 0.94124 0.94022 0.93159 0.72003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.29 11.03 127.77 1.41 4.70 16 2 N -0.63 -21.29 3.36 -863.15 -2.90 -24.19 16 3 C 0.12 3.84 7.32 86.65 0.63 4.47 16 4 C 0.11 3.32 4.16 44.51 0.19 3.50 16 5 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 6 C 0.50 17.77 6.94 87.65 0.61 18.38 16 7 O -0.59 -25.22 16.58 -3.03 -0.05 -25.27 16 8 N -0.68 -22.85 4.14 -463.05 -1.92 -24.76 16 9 C 0.14 4.75 4.49 86.38 0.39 5.14 16 10 C 0.16 4.89 3.01 44.98 0.14 5.03 16 11 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 12 C -0.12 -3.22 5.37 30.67 0.16 -3.06 16 13 C -0.10 -2.40 5.88 30.62 0.18 -2.22 16 14 C -0.13 -3.76 6.08 30.67 0.19 -3.57 16 15 C 0.13 4.57 4.02 86.36 0.35 4.92 16 16 N -0.61 -22.89 2.42 -675.24 -1.63 -24.52 16 17 C -0.24 -10.92 6.64 84.03 0.56 -10.36 16 18 H 0.03 1.58 7.07 -2.91 -0.02 1.56 16 19 C 0.01 0.42 5.31 84.86 0.45 0.87 16 20 N -0.94 -47.60 13.97 21.65 0.30 -47.30 16 21 Si 0.89 35.46 26.63 68.60 1.83 37.29 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.32 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.21 -7.68 3.85 99.48 0.38 -7.30 16 25 N -0.71 -22.25 5.64 -459.91 -2.59 -24.84 16 26 C 0.70 25.81 8.61 179.48 1.55 27.36 16 27 O -0.63 -27.34 17.53 -4.00 -0.07 -27.41 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.98 7.91 -2.39 -0.02 1.96 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 3.01 7.72 -2.39 -0.02 2.99 16 32 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.41 13.64 7.39 -92.71 -0.69 12.96 16 34 H 0.03 1.37 7.44 -2.39 -0.02 1.35 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.04 1.57 6.48 -2.39 -0.02 1.55 16 43 H 0.04 1.36 6.35 -2.39 -0.02 1.34 16 44 H 0.26 12.86 8.31 -92.70 -0.77 12.09 16 45 H 0.44 12.15 8.96 -92.70 -0.83 11.32 16 Total: -1.00 -65.31 352.54 -1.07 -66.38 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.83 Total: 39.47 kcal Atomic # 6 Polarization: 48.37 SS G_CDS: 6.79 Total: 55.16 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -8.74 Total: -145.62 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.12 Total: -52.68 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 1.83 Total: 37.29 kcal Total: -65.31 -1.07 -66.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024595573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.810 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds