Wall clock time and date at job start Fri Apr 10 2020 18:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99733 * 2 1 4 4 H 1.07997 * 119.99961 * 154.60984 * 3 2 1 5 5 C 1.38805 * 120.00145 * 334.62068 * 3 2 1 6 6 N 1.31622 * 120.00335 * 3.91056 * 5 3 2 7 7 Si 1.86802 * 120.00455 * 183.91483 * 5 3 2 8 8 H 1.48505 * 109.46604 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47403 * 119.99174 * 7 5 3 10 10 H 1.48492 * 109.47448 * 240.00106 * 7 5 3 11 11 C 1.46498 * 120.00029 * 179.73188 * 2 1 3 12 12 C 1.53002 * 109.47308 * 89.99979 * 11 2 1 13 13 H 1.08998 * 109.46940 * 304.99673 * 12 11 2 14 14 O 1.42902 * 109.47349 * 64.99802 * 12 11 2 15 15 C 1.53002 * 109.46968 * 184.99714 * 12 11 2 16 16 N 1.46499 * 109.46704 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00201 * 90.00120 * 16 15 12 18 18 C 1.34780 * 120.00100 * 269.99879 * 16 15 12 19 19 O 1.21290 * 119.99779 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.00202 * 180.02562 * 18 16 15 21 21 C 1.50704 * 109.46924 * 180.02562 * 20 18 16 22 22 C 1.39864 * 126.04217 * 90.02375 * 21 20 18 23 23 N 1.30834 * 108.20228 * 179.97438 * 22 21 20 24 24 N 1.40076 * 108.20584 * 359.97438 * 23 22 21 25 25 C 1.46507 * 126.03511 * 179.97438 * 24 23 22 26 26 C 1.34948 * 107.92719 * 359.76016 * 24 23 22 27 27 H 1.08997 * 109.46967 * 84.46700 * 1 2 3 28 28 H 1.09001 * 109.46805 * 204.46288 * 1 2 3 29 29 H 1.09000 * 109.46902 * 324.45929 * 1 2 3 30 30 H 0.96999 * 120.00877 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46871 * 209.99700 * 11 2 1 32 32 H 1.08997 * 109.46972 * 329.99361 * 11 2 1 33 33 H 0.96700 * 114.00009 * 60.00018 * 14 12 11 34 34 H 1.08998 * 109.47257 * 299.99765 * 15 12 11 35 35 H 1.08996 * 109.46841 * 59.99935 * 15 12 11 36 36 H 1.09003 * 109.47094 * 89.99465 * 17 16 15 37 37 H 1.08999 * 109.47366 * 209.99610 * 17 16 15 38 38 H 1.08999 * 109.47568 * 329.99978 * 17 16 15 39 39 H 1.09003 * 109.46508 * 299.99527 * 20 18 16 40 40 H 1.08990 * 109.47096 * 59.99961 * 20 18 16 41 41 H 1.08002 * 125.89727 * 359.97438 * 22 21 20 42 42 H 1.08997 * 109.47055 * 89.98213 * 25 24 23 43 43 H 1.09000 * 109.47037 * 209.97915 * 25 24 23 44 44 H 1.08998 * 109.47134 * 329.97645 * 25 24 23 45 45 H 1.08001 * 126.12626 * 180.23909 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1514 1.2312 0.4010 5 6 1.5561 2.3300 -0.5152 6 7 0.3085 2.2931 -0.9330 7 14 2.5279 3.9222 -0.6159 8 1 3.8971 3.7007 -0.0854 9 1 2.6104 4.3632 -2.0314 10 1 1.8487 4.9685 0.1898 11 6 2.1975 -1.2687 0.0059 12 6 2.4526 -1.7172 -1.4345 13 1 1.5062 -1.7643 -1.9733 14 8 3.3210 -0.7823 -2.0778 15 6 3.1062 -3.1005 -1.4297 16 7 3.3498 -3.5302 -2.8090 17 6 4.6182 -3.2031 -3.4649 18 6 2.4069 -4.2263 -3.4745 19 8 1.3565 -4.4967 -2.9316 20 6 2.6577 -4.6688 -4.8931 21 6 1.4567 -5.4223 -5.4040 22 6 0.3559 -4.8664 -6.0638 23 7 -0.4786 -5.8321 -6.3515 24 7 0.0659 -7.0349 -5.8837 25 6 -0.5463 -8.3609 -5.9997 26 6 1.2561 -6.7573 -5.3114 27 1 -0.3633 0.0991 -1.0229 28 1 -0.3633 -0.9354 0.4256 29 1 -0.3633 0.8362 0.5974 30 1 -0.1063 3.0925 -1.2934 31 1 3.1500 -1.1359 0.5191 32 1 1.6085 -2.0259 0.5234 33 1 4.1837 -0.6888 -1.6511 34 1 4.0525 -3.0534 -0.8910 35 1 2.4438 -3.8136 -0.9390 36 1 5.3380 -4.0010 -3.2821 37 1 4.4562 -3.0987 -4.5377 38 1 5.0043 -2.2665 -3.0628 39 1 2.8318 -3.7948 -5.5207 40 1 3.5332 -5.3172 -4.9220 41 1 0.2186 -3.8206 -6.2958 42 1 -0.2278 -8.8278 -6.9317 43 1 -0.2348 -8.9798 -5.1583 44 1 -1.6317 -8.2615 -5.9955 45 1 1.9268 -7.4722 -4.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677147370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:41 Heat of formation + Delta-G solvation = 31.619574 kcal Electronic energy + Delta-G solvation = -26116.915377 eV Core-core repulsion = 22366.003714 eV Total energy + Delta-G solvation = -3750.911663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29784 -39.60870 -37.22440 -35.17874 -34.33583 -33.74177 -31.93982 -31.28081 -29.71267 -28.35916 -26.72257 -26.26804 -25.74800 -24.67148 -22.06302 -21.17967 -20.54322 -20.36212 -18.96642 -17.01435 -16.93615 -16.74399 -15.98039 -15.81953 -15.46299 -14.97739 -14.69712 -14.45959 -14.38183 -13.97757 -13.50173 -13.29235 -13.19878 -13.07380 -12.87096 -12.72050 -12.56638 -12.47356 -12.29637 -11.82786 -11.72952 -11.34147 -11.05305 -10.80942 -10.64276 -10.58134 -10.38479 -10.16445 -9.95109 -9.80299 -9.72256 -9.46563 -9.45650 -8.43475 -8.39868 -8.25825 -6.59038 -5.60502 -3.05327 1.81734 2.43451 2.68250 2.86220 3.31100 3.45471 3.50632 3.53221 4.36367 4.59140 4.68698 4.77645 4.89252 4.97391 5.04057 5.09112 5.14520 5.20185 5.24908 5.30517 5.47901 5.48977 5.56828 5.63683 5.70653 5.80503 5.91379 6.02376 6.04734 6.11078 6.18088 6.52734 6.58257 6.70910 6.89803 6.90699 6.96469 7.56819 7.58111 7.63869 7.86133 7.96462 8.41037 8.46418 8.54981 9.37352 9.98112 10.48325 11.45222 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.003008 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.340799 B = 9306.447297 C = 9715.727769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.597 5.597 3 C -0.239 4.239 4 H 0.065 0.935 5 C 0.005 3.995 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.280 1.280 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.126 3.874 12 C 0.074 3.926 13 H 0.091 0.909 14 O -0.537 6.537 15 C 0.082 3.918 16 N -0.609 5.609 17 C 0.082 3.918 18 C 0.509 3.491 19 O -0.533 6.533 20 C -0.057 4.057 21 C -0.217 4.217 22 C 0.066 3.934 23 N -0.299 5.299 24 N -0.380 5.380 25 C 0.104 3.896 26 C 0.066 3.934 27 H 0.024 0.976 28 H -0.010 1.010 29 H 0.053 0.947 30 H 0.250 0.750 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.355 0.645 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.182 0.818 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 -20.844 -8.806 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.319 5.319 3 C -0.369 4.369 4 H 0.083 0.917 5 C -0.192 4.192 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.205 1.205 9 H -0.217 1.217 10 H -0.221 1.221 11 C -0.003 4.003 12 C 0.010 3.990 13 H 0.109 0.891 14 O -0.339 6.339 15 C -0.041 4.041 16 N -0.342 5.342 17 C -0.062 4.062 18 C 0.297 3.703 19 O -0.409 6.409 20 C -0.098 4.098 21 C -0.229 4.229 22 C -0.120 4.120 23 N -0.120 5.120 24 N -0.162 5.162 25 C -0.038 4.038 26 C -0.081 4.081 27 H 0.043 0.957 28 H 0.009 0.991 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.200 0.800 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.199 0.801 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.748 -21.247 -9.508 23.976 hybrid contribution 1.782 1.076 0.571 2.159 sum 7.530 -20.171 -8.937 23.312 Atomic orbital electron populations 1.20879 0.82273 0.95233 0.99390 1.43834 1.01912 1.00354 1.85785 1.19081 0.98924 0.86021 1.32869 0.91677 1.25127 0.96556 0.98680 0.98880 1.70090 1.11367 1.27617 1.46467 0.86208 0.79393 0.83779 0.77270 1.20539 1.21727 1.22066 1.21450 0.96361 0.89343 0.93192 1.23202 0.93249 0.84873 0.97668 0.89128 1.86692 1.28111 1.63941 1.55183 1.22372 1.01238 0.98556 0.81983 1.47770 1.16990 1.54908 1.14526 1.21785 0.85020 1.01058 0.98291 1.20702 0.83519 0.77821 0.88275 1.90709 1.25152 1.55918 1.69125 1.19918 0.96094 1.00527 0.93308 1.19450 0.99906 0.92650 1.10883 1.23769 0.91740 0.99053 0.97463 1.77346 1.22137 0.89781 1.22763 1.48374 1.15187 1.07133 1.45472 1.21808 1.00189 0.78973 1.02785 1.22176 0.89564 0.97190 0.99137 0.95725 0.99139 0.92870 0.93976 0.93714 0.93836 0.80016 0.90923 0.89701 0.93301 0.91234 0.90375 0.88141 0.88795 0.80105 0.90966 0.89642 0.89349 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.41 8.99 59.85 0.54 4.95 16 2 N -0.60 -15.48 2.91 -181.12 -0.53 -16.01 16 3 C -0.24 -6.65 9.18 -15.06 -0.14 -6.79 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.01 0.15 5.38 -17.43 -0.09 0.05 16 6 N -0.91 -27.57 10.13 55.49 0.56 -27.00 16 7 Si 0.90 22.46 29.56 -169.99 -5.02 17.44 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 C 0.13 2.57 5.39 -4.04 -0.02 2.55 16 12 C 0.07 1.39 3.48 -26.73 -0.09 1.30 16 13 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 14 O -0.54 -10.47 11.55 -35.23 -0.41 -10.88 16 15 C 0.08 1.19 5.10 -4.04 -0.02 1.17 16 16 N -0.61 -8.03 2.80 -181.58 -0.51 -8.54 16 17 C 0.08 0.76 9.98 59.84 0.60 1.36 16 18 C 0.51 7.43 7.67 -10.98 -0.08 7.35 16 19 O -0.53 -10.16 15.61 5.55 0.09 -10.08 16 20 C -0.06 -0.61 4.74 -29.03 -0.14 -0.74 16 21 C -0.22 -2.68 4.59 -105.05 -0.48 -3.17 16 22 C 0.07 0.91 11.96 -17.37 -0.21 0.70 16 23 N -0.30 -4.32 12.57 30.62 0.39 -3.93 16 24 N -0.38 -4.40 4.01 -68.16 -0.27 -4.67 16 25 C 0.10 0.70 11.47 59.85 0.69 1.39 16 26 C 0.07 0.72 11.40 -17.22 -0.20 0.52 16 27 H 0.02 0.71 7.43 -51.93 -0.39 0.32 16 28 H -0.01 -0.23 7.83 -51.93 -0.41 -0.64 16 29 H 0.05 1.50 7.04 -51.93 -0.37 1.13 16 30 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 32 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 33 H 0.36 5.59 8.79 45.56 0.40 5.99 16 34 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 38 H 0.08 0.75 6.88 -51.93 -0.36 0.39 16 39 H 0.10 0.94 7.40 -51.93 -0.38 0.55 16 40 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 41 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -38.33 374.06 -6.11 -44.44 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.39 Total: 2.96 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 0.35 Total: 10.63 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.36 Total: -60.15 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.32 Total: -20.95 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.33 -6.11 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677147370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.063 kcal (2) G-P(sol) polarization free energy of solvation -38.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds