Wall clock time and date at job start Fri Apr 10 2020 18:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99733 * 2 1 4 4 H 1.07997 * 119.99961 * 154.60984 * 3 2 1 5 5 C 1.38805 * 120.00145 * 334.62068 * 3 2 1 6 6 N 1.31622 * 120.00335 * 3.91056 * 5 3 2 7 7 Si 1.86802 * 120.00455 * 183.91483 * 5 3 2 8 8 H 1.48505 * 109.46604 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47403 * 119.99174 * 7 5 3 10 10 H 1.48492 * 109.47448 * 240.00106 * 7 5 3 11 11 C 1.46498 * 120.00029 * 179.73188 * 2 1 3 12 12 C 1.53002 * 109.47308 * 89.99979 * 11 2 1 13 13 H 1.08998 * 109.46940 * 304.99673 * 12 11 2 14 14 O 1.42902 * 109.47349 * 64.99802 * 12 11 2 15 15 C 1.53002 * 109.46968 * 184.99714 * 12 11 2 16 16 N 1.46499 * 109.46704 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00201 * 90.00120 * 16 15 12 18 18 C 1.34780 * 120.00100 * 269.99879 * 16 15 12 19 19 O 1.21290 * 119.99779 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.00202 * 180.02562 * 18 16 15 21 21 C 1.50704 * 109.46924 * 180.02562 * 20 18 16 22 22 C 1.39864 * 126.04217 * 90.02375 * 21 20 18 23 23 N 1.30834 * 108.20228 * 179.97438 * 22 21 20 24 24 N 1.40076 * 108.20584 * 359.97438 * 23 22 21 25 25 C 1.46507 * 126.03511 * 179.97438 * 24 23 22 26 26 C 1.34948 * 107.92719 * 359.76016 * 24 23 22 27 27 H 1.08997 * 109.46967 * 84.46700 * 1 2 3 28 28 H 1.09001 * 109.46805 * 204.46288 * 1 2 3 29 29 H 1.09000 * 109.46902 * 324.45929 * 1 2 3 30 30 H 0.96999 * 120.00877 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46871 * 209.99700 * 11 2 1 32 32 H 1.08997 * 109.46972 * 329.99361 * 11 2 1 33 33 H 0.96700 * 114.00009 * 60.00018 * 14 12 11 34 34 H 1.08998 * 109.47257 * 299.99765 * 15 12 11 35 35 H 1.08996 * 109.46841 * 59.99935 * 15 12 11 36 36 H 1.09003 * 109.47094 * 89.99465 * 17 16 15 37 37 H 1.08999 * 109.47366 * 209.99610 * 17 16 15 38 38 H 1.08999 * 109.47568 * 329.99978 * 17 16 15 39 39 H 1.09003 * 109.46508 * 299.99527 * 20 18 16 40 40 H 1.08990 * 109.47096 * 59.99961 * 20 18 16 41 41 H 1.08002 * 125.89727 * 359.97438 * 22 21 20 42 42 H 1.08997 * 109.47055 * 89.98213 * 25 24 23 43 43 H 1.09000 * 109.47037 * 209.97915 * 25 24 23 44 44 H 1.08998 * 109.47134 * 329.97645 * 25 24 23 45 45 H 1.08001 * 126.12626 * 180.23909 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1514 1.2312 0.4010 5 6 1.5561 2.3300 -0.5152 6 7 0.3085 2.2931 -0.9330 7 14 2.5279 3.9222 -0.6159 8 1 3.8971 3.7007 -0.0854 9 1 2.6104 4.3632 -2.0314 10 1 1.8487 4.9685 0.1898 11 6 2.1975 -1.2687 0.0059 12 6 2.4526 -1.7172 -1.4345 13 1 1.5062 -1.7643 -1.9733 14 8 3.3210 -0.7823 -2.0778 15 6 3.1062 -3.1005 -1.4297 16 7 3.3498 -3.5302 -2.8090 17 6 4.6182 -3.2031 -3.4649 18 6 2.4069 -4.2263 -3.4745 19 8 1.3565 -4.4967 -2.9316 20 6 2.6577 -4.6688 -4.8931 21 6 1.4567 -5.4223 -5.4040 22 6 0.3559 -4.8664 -6.0638 23 7 -0.4786 -5.8321 -6.3515 24 7 0.0659 -7.0349 -5.8837 25 6 -0.5463 -8.3609 -5.9997 26 6 1.2561 -6.7573 -5.3114 27 1 -0.3633 0.0991 -1.0229 28 1 -0.3633 -0.9354 0.4256 29 1 -0.3633 0.8362 0.5974 30 1 -0.1063 3.0925 -1.2934 31 1 3.1500 -1.1359 0.5191 32 1 1.6085 -2.0259 0.5234 33 1 4.1837 -0.6888 -1.6511 34 1 4.0525 -3.0534 -0.8910 35 1 2.4438 -3.8136 -0.9390 36 1 5.3380 -4.0010 -3.2821 37 1 4.4562 -3.0987 -4.5377 38 1 5.0043 -2.2665 -3.0628 39 1 2.8318 -3.7948 -5.5207 40 1 3.5332 -5.3172 -4.9220 41 1 0.2186 -3.8206 -6.2958 42 1 -0.2278 -8.8278 -6.9317 43 1 -0.2348 -8.9798 -5.1583 44 1 -1.6317 -8.2615 -5.9955 45 1 1.9268 -7.4722 -4.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677147370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:40 Heat of formation + Delta-G solvation = 2.435977 kcal Electronic energy + Delta-G solvation = -26118.180873 eV Core-core repulsion = 22366.003714 eV Total energy + Delta-G solvation = -3752.177159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17464 -40.72535 -38.77048 -36.80163 -35.78724 -34.54887 -33.31405 -32.79797 -31.13762 -29.26284 -28.08059 -27.71485 -27.16051 -25.90251 -23.71950 -22.15459 -22.03428 -21.48500 -19.99537 -18.80674 -18.03999 -17.78701 -17.39386 -16.93562 -16.56675 -16.29286 -16.21793 -15.92580 -15.43256 -15.21037 -15.12996 -14.79517 -14.26683 -14.14786 -13.95856 -13.80085 -13.52969 -13.39589 -13.20242 -13.15689 -13.04002 -12.80762 -12.69403 -12.53571 -12.43704 -12.12870 -12.05745 -11.85953 -11.76579 -11.54153 -11.11287 -10.75357 -10.55744 -10.34925 -9.44928 -9.30354 -8.65495 -7.76905 -5.23531 0.96642 1.47668 1.49886 1.59238 1.67323 1.74804 1.80872 2.34616 2.55560 3.40095 3.61500 3.64473 3.80085 3.91471 3.99274 4.14569 4.23650 4.29252 4.33709 4.42736 4.44366 4.50288 4.59981 4.61344 4.67747 4.77656 4.79102 4.83441 4.89036 4.92792 4.94873 5.13197 5.19152 5.31546 5.37283 5.64277 5.66149 5.69272 5.74973 6.17988 6.39022 6.57005 6.72622 7.13228 7.22868 7.36406 7.90925 8.37755 9.29068 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.003008 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.340799 B = 9306.447297 C = 9715.727769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.616 5.616 3 C -0.235 4.235 4 H 0.080 0.920 5 C -0.061 4.061 6 N -0.949 5.949 7 Si 0.970 3.030 8 H -0.257 1.257 9 H -0.299 1.299 10 H -0.298 1.298 11 C 0.121 3.879 12 C 0.090 3.910 13 H 0.036 0.964 14 O -0.556 6.556 15 C 0.095 3.905 16 N -0.609 5.609 17 C 0.074 3.926 18 C 0.500 3.500 19 O -0.589 6.589 20 C -0.046 4.046 21 C -0.239 4.239 22 C 0.041 3.959 23 N -0.341 5.341 24 N -0.383 5.383 25 C 0.093 3.907 26 C 0.072 3.928 27 H -0.012 1.012 28 H 0.016 0.984 29 H 0.027 0.973 30 H 0.242 0.758 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.374 0.626 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.180 0.820 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 -22.716 -8.565 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.339 5.339 3 C -0.365 4.365 4 H 0.098 0.902 5 C -0.254 4.254 6 N -0.597 5.597 7 Si 0.799 3.201 8 H -0.181 1.181 9 H -0.227 1.227 10 H -0.225 1.225 11 C -0.006 4.006 12 C 0.027 3.973 13 H 0.054 0.946 14 O -0.362 6.362 15 C -0.029 4.029 16 N -0.341 5.341 17 C -0.067 4.067 18 C 0.290 3.710 19 O -0.469 6.469 20 C -0.086 4.086 21 C -0.251 4.251 22 C -0.144 4.144 23 N -0.163 5.163 24 N -0.165 5.165 25 C -0.046 4.046 26 C -0.075 4.075 27 H 0.006 0.994 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.222 0.778 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.197 0.803 42 H 0.111 0.889 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.462 -23.150 -9.270 26.671 hybrid contribution 0.668 1.544 0.530 1.764 sum 10.129 -21.606 -8.740 25.412 Atomic orbital electron populations 1.20530 0.83478 0.95361 0.96863 1.44080 1.01710 1.02015 1.86065 1.19483 0.99043 0.86663 1.31343 0.90248 1.25947 0.97486 1.02329 0.99649 1.70306 1.13097 1.27956 1.48347 0.85138 0.78942 0.79556 0.76427 1.18127 1.22697 1.22515 1.21673 0.97052 0.87279 0.94562 1.22718 0.91793 0.87569 0.95184 0.94552 1.86645 1.29301 1.64421 1.55784 1.22086 1.02349 0.94945 0.83563 1.47897 1.18123 1.53995 1.14048 1.22078 0.83613 1.02217 0.98822 1.21479 0.82734 0.77213 0.89558 1.90684 1.27418 1.58235 1.70569 1.19949 0.96805 1.01518 0.90363 1.19753 1.00326 0.93562 1.11424 1.23978 0.92738 0.99260 0.98397 1.77246 1.23402 0.91194 1.24455 1.48785 1.15477 1.07598 1.44609 1.22181 0.99970 0.77363 1.05116 1.22801 0.89489 0.97483 0.97775 0.99371 0.96524 0.95411 0.94879 0.91059 0.92724 0.77846 0.86996 0.90927 0.89970 0.89872 0.90522 0.87034 0.84794 0.80318 0.88924 0.86887 0.89821 0.77538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.01 8.99 127.77 1.15 11.16 16 2 N -0.62 -32.00 2.91 -726.93 -2.12 -34.11 16 3 C -0.24 -12.94 9.18 84.03 0.77 -12.16 16 4 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 5 C -0.06 -3.53 5.38 84.86 0.46 -3.08 16 6 N -0.95 -59.52 10.13 21.65 0.22 -59.30 16 7 Si 0.97 46.44 29.56 68.60 2.03 48.47 16 8 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 9 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 11 C 0.12 4.80 5.39 86.38 0.47 5.27 16 12 C 0.09 3.37 3.48 30.60 0.11 3.47 16 13 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 14 O -0.56 -20.91 11.55 -148.98 -1.72 -22.63 16 15 C 0.09 2.55 5.10 86.38 0.44 2.99 16 16 N -0.61 -14.62 2.80 -846.77 -2.37 -16.99 16 17 C 0.07 1.09 9.98 127.77 1.28 2.37 16 18 C 0.50 14.00 7.67 87.66 0.67 14.68 16 19 O -0.59 -22.77 15.61 -3.06 -0.05 -22.81 16 20 C -0.05 -0.87 4.74 29.10 0.14 -0.73 16 21 C -0.24 -5.70 4.59 -20.14 -0.09 -5.79 16 22 C 0.04 1.18 11.96 85.24 1.02 2.20 16 23 N -0.34 -10.12 12.57 -57.03 -0.72 -10.84 16 24 N -0.38 -8.52 4.01 -369.55 -1.48 -10.00 16 25 C 0.09 1.11 11.47 127.77 1.47 2.58 16 26 C 0.07 1.43 11.40 83.54 0.95 2.38 16 27 H -0.01 -0.74 7.43 -2.39 -0.02 -0.76 16 28 H 0.02 0.79 7.83 -2.39 -0.02 0.77 16 29 H 0.03 1.61 7.04 -2.39 -0.02 1.60 16 30 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 32 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 33 H 0.37 10.67 8.79 -74.06 -0.65 10.02 16 34 H 0.11 2.15 8.07 -2.39 -0.02 2.14 16 35 H 0.07 2.17 7.42 -2.39 -0.02 2.16 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.01 6.44 -2.39 -0.02 1.00 16 38 H 0.08 1.18 6.88 -2.39 -0.02 1.16 16 39 H 0.11 1.86 7.40 -2.39 -0.02 1.84 16 40 H 0.13 1.43 8.11 -2.39 -0.02 1.41 16 41 H 0.18 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -88.14 374.06 2.95 -85.19 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.33 Total: 17.71 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 8.82 Total: 25.34 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -6.46 Total: -131.25 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.77 Total: -45.45 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -88.14 2.95 -85.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677147370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.621 kcal (2) G-P(sol) polarization free energy of solvation -88.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds