Wall clock time and date at job start Fri Apr 10 2020 18:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99954 * 2 1 4 4 H 1.08000 * 120.00085 * 162.25245 * 3 2 1 5 5 C 1.38810 * 120.00232 * 341.97949 * 3 2 1 6 6 N 1.31618 * 119.99811 * 345.02754 * 5 3 2 7 7 Si 1.86795 * 120.00090 * 165.02411 * 5 3 2 8 8 H 1.48504 * 109.47323 * 60.00193 * 7 5 3 9 9 H 1.48508 * 109.47099 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47508 * 299.99945 * 7 5 3 11 11 C 1.46494 * 120.00157 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47407 * 270.00056 * 11 2 1 13 13 H 1.09006 * 109.47204 * 59.99859 * 12 11 2 14 14 O 1.42894 * 109.47334 * 300.00057 * 12 11 2 15 15 C 1.52995 * 109.47301 * 179.97438 * 12 11 2 16 16 N 1.46508 * 109.47413 * 185.00126 * 15 12 11 17 17 C 1.46497 * 119.99652 * 270.00466 * 16 15 12 18 18 C 1.34777 * 119.99803 * 89.99753 * 16 15 12 19 19 O 1.21278 * 120.00173 * 0.02562 * 18 16 15 20 20 C 1.50700 * 119.99452 * 180.02562 * 18 16 15 21 21 C 1.50702 * 109.46767 * 180.02562 * 20 18 16 22 22 C 1.39875 * 126.03810 * 90.02831 * 21 20 18 23 23 N 1.30835 * 108.19911 * 179.97438 * 22 21 20 24 24 N 1.40081 * 108.21185 * 359.97438 * 23 22 21 25 25 C 1.46497 * 126.04253 * 180.02562 * 24 23 22 26 26 C 1.34955 * 107.92378 * 359.75945 * 24 23 22 27 27 H 1.08999 * 109.47367 * 84.95146 * 1 2 3 28 28 H 1.08996 * 109.47390 * 204.94968 * 1 2 3 29 29 H 1.09002 * 109.47029 * 324.95388 * 1 2 3 30 30 H 0.97004 * 119.99810 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.46890 * 30.00256 * 11 2 1 32 32 H 1.08998 * 109.47216 * 150.00110 * 11 2 1 33 33 H 0.96701 * 113.99868 * 300.00110 * 14 12 11 34 34 H 1.09005 * 109.47654 * 305.00000 * 15 12 11 35 35 H 1.09001 * 109.46924 * 65.00226 * 15 12 11 36 36 H 1.08997 * 109.47437 * 90.00084 * 17 16 15 37 37 H 1.09001 * 109.46729 * 209.99599 * 17 16 15 38 38 H 1.09000 * 109.47486 * 329.99605 * 17 16 15 39 39 H 1.08993 * 109.47707 * 300.00206 * 20 18 16 40 40 H 1.09003 * 109.47119 * 60.00466 * 20 18 16 41 41 H 1.07993 * 125.89703 * 359.97438 * 22 21 20 42 42 H 1.08996 * 109.47009 * 89.97425 * 25 24 23 43 43 H 1.08999 * 109.47305 * 209.98147 * 25 24 23 44 44 H 1.08999 * 109.46905 * 329.97565 * 25 24 23 45 45 H 1.07993 * 126.13010 * 180.23908 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1911 1.2082 0.2851 5 6 1.5067 2.3586 -0.3719 6 7 0.3505 2.3049 -0.9986 7 14 2.2823 4.0128 0.0172 8 1 3.6086 4.1056 -0.6444 9 1 1.4036 5.1011 -0.4818 10 1 2.4516 4.1469 1.4863 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.5001 -1.8416 1.9555 14 8 3.2247 -0.7155 2.1158 15 6 3.2170 -3.0363 1.4411 16 7 3.3569 -3.5201 2.8169 17 6 4.5216 -3.1304 3.6154 18 6 2.4140 -4.3235 3.3478 19 8 1.4499 -4.6464 2.6866 20 6 2.5577 -4.8207 4.7632 21 6 1.3799 -5.6943 5.1107 22 6 1.2989 -7.0783 4.9254 23 7 0.1266 -7.4790 5.3460 24 7 -0.5763 -6.3611 5.8135 25 6 -1.9304 -6.3662 6.3725 26 6 0.2165 -5.2794 5.6635 27 1 -0.3634 0.0904 -1.0237 28 1 -0.3634 -0.9317 0.4335 29 1 -0.3633 0.8414 0.5901 30 1 -0.0986 3.1244 -1.2588 31 1 1.6084 -2.0281 -0.5148 32 1 3.1499 -1.1381 -0.5143 33 1 4.0872 -0.5468 1.7124 34 1 2.6693 -3.7715 0.8514 35 1 4.2052 -2.8854 1.0067 36 1 4.3005 -2.2096 4.1551 37 1 4.7551 -3.9218 4.3276 38 1 5.3759 -2.9699 2.9577 39 1 3.4774 -5.3984 4.8538 40 1 2.5938 -3.9709 5.4448 41 1 2.0707 -7.7074 4.5073 42 1 -1.8778 -6.5167 7.4507 43 1 -2.4141 -5.4124 6.1618 44 1 -2.5069 -7.1735 5.9207 45 1 -0.0338 -4.2641 5.9333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677147371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:45 Heat of formation + Delta-G solvation = 29.974925 kcal Electronic energy + Delta-G solvation = -26008.930246 eV Core-core repulsion = 22257.947265 eV Total energy + Delta-G solvation = -3750.982981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34299 -39.67487 -37.32401 -35.24147 -34.41579 -33.77700 -31.99186 -31.31514 -29.76336 -28.39217 -26.78610 -26.31785 -25.77689 -24.73520 -22.14817 -21.22311 -20.59507 -20.41369 -19.02115 -17.07564 -16.97010 -16.78653 -16.04631 -15.78370 -15.48394 -15.03277 -14.75793 -14.56555 -14.54427 -13.91164 -13.49129 -13.36658 -13.30299 -13.07414 -12.89904 -12.75394 -12.70886 -12.49119 -12.34818 -11.94792 -11.78060 -11.45498 -10.99453 -10.78332 -10.70842 -10.64781 -10.48552 -10.26637 -9.95127 -9.89929 -9.72564 -9.57980 -9.50747 -8.52309 -8.47646 -8.27654 -6.66827 -5.62024 -3.02539 1.78713 2.39908 2.61505 2.79578 3.24459 3.44188 3.50143 3.52043 4.34479 4.57669 4.69561 4.71327 4.90175 4.93156 4.98495 5.03494 5.08026 5.16254 5.21275 5.27143 5.38315 5.43301 5.52548 5.55355 5.67454 5.76313 5.84610 5.97229 5.98560 6.04665 6.10908 6.50603 6.54012 6.65752 6.80355 6.87220 6.88455 7.49441 7.50466 7.58119 7.78603 7.90244 8.31405 8.35991 8.47878 9.32661 9.96652 10.44288 11.43794 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.002949 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.488282 B = 9491.206746 C =10172.306073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.595 5.595 3 C -0.235 4.235 4 H 0.069 0.931 5 C -0.008 4.008 6 N -0.914 5.914 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.293 1.293 10 H -0.286 1.286 11 C 0.125 3.875 12 C 0.073 3.927 13 H 0.088 0.912 14 O -0.543 6.543 15 C 0.084 3.916 16 N -0.610 5.610 17 C 0.082 3.918 18 C 0.509 3.491 19 O -0.532 6.532 20 C -0.057 4.057 21 C -0.220 4.220 22 C 0.063 3.937 23 N -0.301 5.301 24 N -0.377 5.377 25 C 0.103 3.897 26 C 0.071 3.929 27 H 0.027 0.973 28 H -0.006 1.006 29 H 0.046 0.954 30 H 0.251 0.749 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.360 0.640 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.180 0.820 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -16.733 14.925 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.316 5.316 3 C -0.364 4.364 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.212 1.212 9 H -0.219 1.219 10 H -0.212 1.212 11 C -0.004 4.004 12 C 0.009 3.991 13 H 0.106 0.894 14 O -0.346 6.346 15 C -0.040 4.040 16 N -0.344 5.344 17 C -0.062 4.062 18 C 0.297 3.703 19 O -0.408 6.408 20 C -0.098 4.098 21 C -0.232 4.232 22 C -0.124 4.124 23 N -0.123 5.123 24 N -0.159 5.159 25 C -0.039 4.039 26 C -0.075 4.075 27 H 0.046 0.954 28 H 0.013 0.987 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.205 0.795 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.197 0.803 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.243 -17.739 15.108 23.525 hybrid contribution 1.360 1.780 -0.303 2.260 sum 4.603 -15.959 14.805 22.250 Atomic orbital electron populations 1.20795 0.82482 0.95455 0.99246 1.43767 1.01832 1.00416 1.85620 1.19109 0.95366 0.84601 1.37364 0.91355 1.24904 0.97784 0.98175 0.99583 1.70105 1.17466 1.26299 1.42178 0.86327 0.78107 0.83925 0.78118 1.21202 1.21881 1.21238 1.21304 0.96700 0.89464 0.92921 1.23169 0.93989 0.84798 0.97102 0.89371 1.86618 1.32328 1.60055 1.55624 1.22345 1.01329 0.97996 0.82297 1.47794 1.23068 1.48961 1.14529 1.21795 0.87779 1.00682 0.95918 1.20708 0.82303 0.78225 0.89107 1.90712 1.30340 1.57503 1.62284 1.19914 0.96859 0.99138 0.93885 1.19434 0.97545 0.94067 1.12174 1.23672 0.95324 0.94481 0.98897 1.77304 1.06468 1.08921 1.19563 1.48372 1.13661 1.05045 1.48841 1.21841 0.78724 1.04509 0.98803 1.22279 0.91275 0.93366 1.00628 0.95435 0.98706 0.93574 0.93927 0.93760 0.93321 0.79524 0.89506 0.90721 0.91829 0.91565 0.91336 0.88425 0.88505 0.80342 0.90884 0.89405 0.89344 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.32 8.97 59.85 0.54 4.85 16 2 N -0.59 -15.31 2.88 -181.13 -0.52 -15.83 16 3 C -0.23 -6.49 9.08 -15.06 -0.14 -6.63 16 4 H 0.07 1.80 7.69 -52.49 -0.40 1.40 16 5 C -0.01 -0.22 5.08 -17.43 -0.09 -0.31 16 6 N -0.91 -27.45 10.53 55.49 0.58 -26.87 16 7 Si 0.90 22.37 29.58 -169.99 -5.03 17.34 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 C 0.13 2.55 5.36 -4.05 -0.02 2.53 16 12 C 0.07 1.29 3.48 -26.73 -0.09 1.20 16 13 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 14 O -0.54 -9.80 12.02 -35.23 -0.42 -10.22 16 15 C 0.08 1.16 5.11 -4.04 -0.02 1.14 16 16 N -0.61 -7.55 2.84 -181.57 -0.52 -8.06 16 17 C 0.08 0.70 9.89 59.85 0.59 1.29 16 18 C 0.51 6.98 7.67 -10.99 -0.08 6.89 16 19 O -0.53 -9.69 15.61 5.56 0.09 -9.60 16 20 C -0.06 -0.56 4.74 -29.03 -0.14 -0.69 16 21 C -0.22 -2.57 4.59 -105.05 -0.48 -3.05 16 22 C 0.06 0.75 11.96 -17.36 -0.21 0.54 16 23 N -0.30 -4.02 12.57 30.62 0.39 -3.63 16 24 N -0.38 -4.32 4.01 -68.17 -0.27 -4.59 16 25 C 0.10 0.72 11.47 59.85 0.69 1.41 16 26 C 0.07 0.80 11.40 -17.22 -0.20 0.60 16 27 H 0.03 0.77 7.47 -51.93 -0.39 0.38 16 28 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 29 H 0.05 1.30 7.04 -51.93 -0.37 0.94 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.36 5.35 9.05 45.56 0.41 5.77 16 34 H 0.09 1.31 7.42 -51.93 -0.39 0.93 16 35 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 38 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 39 H 0.10 0.69 7.40 -51.93 -0.38 0.31 16 40 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -37.76 375.85 -6.13 -43.89 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.44 Total: 2.13 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 0.35 Total: 9.78 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.34 Total: -58.99 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.34 Total: -19.83 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.76 -6.13 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677147371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -37.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds