Wall clock time and date at job start Fri Apr 10 2020 18:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33318 * 126.10538 * 2 1 4 4 C 1.30860 * 109.68251 * 180.27353 * 3 2 1 5 5 N 1.34494 * 109.16566 * 359.77015 * 4 3 2 6 6 C 1.46502 * 126.47567 * 180.02562 * 5 4 3 7 7 C 1.36663 * 126.10731 * 179.88475 * 2 1 3 8 8 C 1.46762 * 126.84392 * 359.97438 * 7 2 1 9 9 O 1.21685 * 120.00252 * 81.78389 * 8 7 2 10 10 N 1.34784 * 120.00077 * 261.78165 * 8 7 2 11 11 C 1.46499 * 119.99915 * 355.17378 * 10 8 7 12 12 C 1.46500 * 120.00048 * 175.17683 * 10 8 7 13 13 C 1.53001 * 109.47240 * 89.99938 * 12 10 8 14 14 H 1.09001 * 109.46886 * 59.99629 * 13 12 10 15 15 O 1.42900 * 109.47121 * 300.00003 * 13 12 10 16 16 C 1.52994 * 109.47100 * 179.97438 * 13 12 10 17 17 N 1.46502 * 109.47142 * 184.99869 * 16 13 12 18 18 C 1.46501 * 120.00177 * 270.00426 * 17 16 13 19 19 C 1.36932 * 120.00076 * 89.99977 * 17 16 13 20 20 H 1.08003 * 119.99823 * 341.83513 * 19 17 16 21 21 C 1.38813 * 120.00295 * 161.55206 * 19 17 16 22 22 N 1.31624 * 119.99547 * 346.38407 * 21 19 17 23 23 Si 1.86792 * 120.00309 * 166.38007 * 21 19 17 24 24 H 1.48504 * 109.46868 * 60.00491 * 23 21 19 25 25 H 1.48498 * 109.47497 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47200 * 300.00776 * 23 21 19 27 27 H 1.08997 * 109.47042 * 270.11914 * 1 2 3 28 28 H 1.09001 * 109.47215 * 30.12013 * 1 2 3 29 29 H 1.09006 * 109.47532 * 150.12029 * 1 2 3 30 30 H 1.08002 * 125.41765 * 179.78024 * 4 3 2 31 31 H 1.09003 * 109.46560 * 274.43719 * 6 5 4 32 32 H 1.08997 * 109.46986 * 34.43111 * 6 5 4 33 33 H 1.08990 * 109.47370 * 154.43566 * 6 5 4 34 34 H 1.09002 * 109.47351 * 273.97917 * 11 10 8 35 35 H 1.09005 * 109.46942 * 33.97583 * 11 10 8 36 36 H 1.08993 * 109.47225 * 153.97385 * 11 10 8 37 37 H 1.09002 * 109.46744 * 329.99901 * 12 10 8 38 38 H 1.09004 * 109.46654 * 209.99819 * 12 10 8 39 39 H 0.96701 * 113.99839 * 300.00117 * 15 13 12 40 40 H 1.09006 * 109.46823 * 65.00430 * 16 13 12 41 41 H 1.08995 * 109.47639 * 305.00010 * 16 13 12 42 42 H 1.09005 * 109.47121 * 264.77173 * 18 17 16 43 43 H 1.09005 * 109.46992 * 24.76631 * 18 17 16 44 44 H 1.08999 * 109.47146 * 144.76910 * 18 17 16 45 45 H 0.97005 * 119.99493 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 6 4.8305 -1.4498 -0.0095 7 6 2.3123 -1.1041 0.0022 8 6 1.8820 -2.5072 0.0056 9 8 1.5593 -3.0472 -1.0361 10 7 1.8444 -3.1978 1.1624 11 6 2.3325 -2.5825 2.3991 12 6 1.3154 -4.5638 1.1832 13 6 2.4522 -5.5550 0.9256 14 1 3.2107 -5.4472 1.7009 15 8 3.0354 -5.2894 -0.3516 16 6 1.8998 -6.9816 0.9479 17 7 3.0047 -7.9351 0.8205 18 6 3.4353 -8.3844 -0.5057 19 6 3.6350 -8.4064 1.9411 20 1 3.5352 -7.8796 2.8787 21 6 4.3974 -9.5644 1.8734 22 7 4.3046 -10.3530 0.8237 23 14 5.5551 -10.0036 3.2720 24 1 4.7778 -10.1588 4.5278 25 1 6.2494 -11.2782 2.9583 26 1 6.5590 -8.9224 3.4417 27 1 -0.3633 0.0021 1.0276 28 1 -0.3634 0.8889 -0.5157 29 1 -0.3634 -0.8911 -0.5120 30 1 4.3970 1.3745 -0.0107 31 1 5.1721 -1.5864 -1.0356 32 1 5.6060 -0.9460 0.5675 33 1 4.6200 -2.4220 0.4358 34 1 3.4084 -2.7368 2.4816 35 1 2.1191 -1.5137 2.3819 36 1 1.8333 -3.0389 3.2537 37 1 0.5568 -4.6715 0.4079 38 1 0.8705 -4.7663 2.1575 39 1 2.4163 -5.3669 -1.0905 40 1 1.2065 -7.1157 0.1175 41 1 1.3775 -7.1543 1.8888 42 1 2.9430 -9.3263 -0.7479 43 1 3.1675 -7.6330 -1.2486 44 1 4.5158 -8.5282 -0.5075 45 1 4.8377 -11.1620 0.7762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677161717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:49 Heat of formation + Delta-G solvation = 10.509156 kcal Electronic energy + Delta-G solvation = -26882.804852 eV Core-core repulsion = 23130.977772 eV Total energy + Delta-G solvation = -3751.827080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40011 -39.63665 -37.24847 -35.41238 -34.64946 -34.54727 -31.63753 -31.29196 -29.80118 -28.51202 -27.06810 -26.42427 -25.82261 -25.37186 -22.90924 -21.57477 -20.70792 -20.56040 -19.14808 -17.64622 -16.99059 -16.66339 -16.08812 -15.89591 -15.71346 -15.05894 -14.88005 -14.65474 -14.44046 -13.79481 -13.74726 -13.57665 -13.20016 -13.14453 -13.09445 -12.85310 -12.73159 -12.50149 -12.49206 -12.32630 -11.87216 -11.53812 -11.10991 -10.89557 -10.72060 -10.63330 -10.46277 -10.30169 -10.07694 -9.95831 -9.85381 -9.76954 -9.69192 -8.68543 -8.53447 -8.41649 -6.72803 -5.70397 -3.13404 1.55033 2.09860 2.75285 2.80253 3.05094 3.36893 3.42619 3.43525 4.26450 4.35923 4.48535 4.50604 4.81758 4.89114 4.92116 5.02332 5.06371 5.09291 5.24594 5.27992 5.40823 5.44886 5.52327 5.53477 5.66745 5.69152 5.76451 5.82605 5.96261 6.00016 6.04138 6.36827 6.44737 6.55628 6.71054 6.87749 6.90931 7.23162 7.51898 7.71938 7.78576 7.85413 8.04866 8.30628 8.39332 9.24917 9.89124 10.36789 11.33873 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.003286 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.543644 B = 8518.391896 C = 8837.844241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.050 3.950 3 N -0.493 5.493 4 C 0.195 3.805 5 N -0.436 5.436 6 C 0.067 3.933 7 C -0.066 4.066 8 C 0.600 3.400 9 O -0.517 6.517 10 N -0.596 5.596 11 C 0.080 3.920 12 C 0.081 3.919 13 C 0.071 3.929 14 H 0.092 0.908 15 O -0.549 6.549 16 C 0.126 3.874 17 N -0.594 5.594 18 C 0.171 3.829 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.000 4.000 22 N -0.908 5.908 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.286 1.286 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.367 0.633 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.001 0.999 44 H 0.043 0.957 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 20.417 1.320 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 N -0.212 5.212 4 C -0.087 4.087 5 N -0.119 5.119 6 C -0.075 4.075 7 C -0.183 4.183 8 C 0.385 3.615 9 O -0.391 6.391 10 N -0.329 5.329 11 C -0.063 4.063 12 C -0.042 4.042 13 C 0.007 3.993 14 H 0.110 0.890 15 O -0.353 6.353 16 C -0.003 4.003 17 N -0.316 5.316 18 C 0.026 3.974 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.214 0.786 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.375 20.687 1.085 20.989 hybrid contribution 0.812 -1.161 0.610 1.542 sum -2.563 19.526 1.694 19.766 Atomic orbital electron populations 1.20116 0.87211 1.03232 1.02436 1.20792 0.96336 0.86796 1.04343 1.70001 1.00378 1.30109 1.20690 1.24946 0.97149 0.81736 1.04878 1.45342 1.06060 1.07704 1.52769 1.22225 0.84260 0.96524 1.04502 1.20754 0.84787 0.95125 1.17636 1.16810 0.78073 0.83013 0.83577 1.90802 1.48253 1.68891 1.31156 1.47705 1.62287 1.14848 1.08065 1.21782 0.99607 0.98566 0.86354 1.22504 0.98011 0.80326 1.03331 1.23240 0.94807 0.94700 0.86530 0.88985 1.86524 1.40618 1.92760 1.15440 1.21285 0.90591 0.88729 0.99679 1.43754 1.35600 1.48751 1.03508 1.20753 0.99215 0.94274 0.83115 1.19140 1.25137 1.04757 0.89420 0.91539 1.24926 1.01318 0.95887 0.97693 1.70108 1.42265 1.13236 1.29722 0.86337 0.81127 0.77385 0.81676 1.21021 1.21631 1.21239 0.91086 0.90604 0.91064 0.77380 0.89783 0.88941 0.88881 0.92767 0.91352 0.90390 0.89736 0.89626 0.78611 0.94131 0.92874 0.95914 0.98079 0.93805 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.24 36.00 0.37 -0.39 16 2 C 0.05 0.64 7.15 -82.52 -0.59 0.05 16 3 N -0.49 -6.22 11.20 -10.64 -0.12 -6.34 16 4 C 0.19 1.93 12.52 -90.57 -1.13 0.79 16 5 N -0.44 -4.68 3.17 -121.98 -0.39 -5.06 16 6 C 0.07 0.57 11.06 59.85 0.66 1.23 16 7 C -0.07 -0.86 4.79 -82.14 -0.39 -1.25 16 8 C 0.60 8.64 6.17 -12.81 -0.08 8.56 16 9 O -0.52 -9.03 15.21 -8.38 -0.13 -9.16 16 10 N -0.60 -7.48 2.83 -183.09 -0.52 -7.99 16 11 C 0.08 0.78 10.29 59.85 0.62 1.40 16 12 C 0.08 1.06 5.18 -4.04 -0.02 1.04 16 13 C 0.07 1.19 3.48 -26.73 -0.09 1.09 16 14 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 15 O -0.55 -10.16 10.97 -48.81 -0.54 -10.70 16 16 C 0.13 2.46 5.30 -4.04 -0.02 2.44 16 17 N -0.59 -14.87 2.89 -181.12 -0.52 -15.39 16 18 C 0.17 4.35 8.74 59.85 0.52 4.87 16 19 C -0.26 -6.95 9.70 -15.06 -0.15 -7.10 16 20 H 0.07 1.73 7.87 -52.48 -0.41 1.32 16 21 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 22 N -0.91 -26.74 10.48 55.49 0.58 -26.16 16 23 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 30 H 0.21 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.97 7.80 -51.93 -0.41 0.57 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.65 6.95 -51.93 -0.36 0.29 16 36 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 37 H 0.08 1.14 7.49 -51.93 -0.39 0.75 16 38 H 0.09 0.93 7.87 -51.93 -0.41 0.53 16 39 H 0.37 6.43 8.31 45.56 0.38 6.81 16 40 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 42 H 0.02 0.62 7.45 -51.93 -0.39 0.23 16 43 H 0.00 0.02 7.22 -51.93 -0.38 -0.36 16 44 H 0.04 1.22 7.05 -51.93 -0.37 0.85 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.89 372.49 -7.92 -42.81 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.48 Total: 2.98 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -0.40 Total: 12.64 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.97 Total: -60.94 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.66 Total: -19.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.89 -7.92 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677161717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.317 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds