Wall clock time and date at job start Fri Apr 10 2020 18:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33320 * 126.10947 * 2 1 4 4 C 1.30860 * 109.68876 * 180.27693 * 3 2 1 5 5 N 1.34498 * 109.16106 * 359.76039 * 4 3 2 6 6 C 1.46498 * 126.47571 * 180.02562 * 5 4 3 7 7 C 1.36662 * 126.10522 * 179.87454 * 2 1 3 8 8 C 1.46765 * 126.84734 * 0.02562 * 7 2 1 9 9 O 1.21675 * 119.99754 * 274.87109 * 8 7 2 10 10 N 1.34779 * 119.99910 * 94.87191 * 8 7 2 11 11 C 1.46502 * 120.00054 * 355.16503 * 10 8 7 12 12 C 1.46502 * 119.99537 * 175.16917 * 10 8 7 13 13 C 1.52994 * 109.47187 * 89.99868 * 12 10 8 14 14 H 1.08998 * 109.47149 * 304.99511 * 13 12 10 15 15 O 1.42904 * 109.47257 * 64.99911 * 13 12 10 16 16 C 1.53000 * 109.47148 * 184.99535 * 13 12 10 17 17 N 1.46494 * 109.47408 * 179.97438 * 16 13 12 18 18 C 1.46513 * 119.99834 * 90.00119 * 17 16 13 19 19 C 1.36932 * 120.00625 * 270.00241 * 17 16 13 20 20 H 1.08001 * 119.99558 * 24.43419 * 19 17 16 21 21 C 1.38811 * 120.00471 * 204.43740 * 19 17 16 22 22 N 1.31621 * 119.99933 * 14.59906 * 21 19 17 23 23 Si 1.86798 * 120.00033 * 194.59627 * 21 19 17 24 24 H 1.48497 * 109.47439 * 60.00014 * 23 21 19 25 25 H 1.48498 * 109.47013 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47055 * 300.00193 * 23 21 19 27 27 H 1.09000 * 109.46869 * 270.12584 * 1 2 3 28 28 H 1.08997 * 109.47136 * 30.12489 * 1 2 3 29 29 H 1.08996 * 109.47024 * 150.12643 * 1 2 3 30 30 H 1.07991 * 125.42295 * 179.78683 * 4 3 2 31 31 H 1.08999 * 109.46897 * 274.55624 * 6 5 4 32 32 H 1.09006 * 109.46683 * 34.55148 * 6 5 4 33 33 H 1.08997 * 109.47334 * 154.55064 * 6 5 4 34 34 H 1.08998 * 109.46637 * 275.05810 * 11 10 8 35 35 H 1.08997 * 109.47064 * 35.05577 * 11 10 8 36 36 H 1.08997 * 109.46768 * 155.06025 * 11 10 8 37 37 H 1.08996 * 109.47168 * 329.99393 * 12 10 8 38 38 H 1.09001 * 109.46453 * 209.99666 * 12 10 8 39 39 H 0.96705 * 113.99941 * 59.99482 * 15 13 12 40 40 H 1.09008 * 109.47107 * 300.00074 * 16 13 12 41 41 H 1.09001 * 109.47051 * 59.99495 * 16 13 12 42 42 H 1.08996 * 109.46751 * 92.42170 * 18 17 16 43 43 H 1.08995 * 109.46761 * 212.42324 * 18 17 16 44 44 H 1.09001 * 109.46735 * 332.42810 * 18 17 16 45 45 H 0.97000 * 119.99644 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 -0.0060 5 7 3.6122 -0.6363 -0.0047 6 6 4.8305 -1.4499 -0.0094 7 6 2.3123 -1.1041 0.0024 8 6 1.8820 -2.5073 0.0050 9 8 1.6177 -3.0606 1.0559 10 7 1.7797 -3.1829 -1.1568 11 6 1.9947 -2.4890 -2.4290 12 6 1.4533 -4.6110 -1.1472 13 6 -0.0653 -4.7875 -1.2065 14 1 -0.5279 -4.2306 -0.3918 15 8 -0.5535 -4.2965 -2.4566 16 6 -0.4119 -6.2716 -1.0712 17 7 -1.8660 -6.4406 -1.1274 18 6 -2.5293 -6.6550 -2.4160 19 6 -2.6053 -6.3982 0.0244 20 1 -2.2291 -5.8705 0.8884 21 6 -3.8382 -7.0334 0.0817 22 7 -4.1726 -7.9060 -0.8453 23 14 -5.0227 -6.6499 1.4742 24 1 -5.3645 -5.2050 1.4497 25 1 -6.2597 -7.4545 1.3076 26 1 -4.3854 -6.9858 2.7728 27 1 -0.3633 0.0023 1.0277 28 1 -0.3633 0.8888 -0.5158 29 1 -0.3633 -0.8911 -0.5118 30 1 4.3970 1.3743 -0.0106 31 1 5.1732 -1.5849 -1.0353 32 1 5.6054 -0.9470 0.5693 33 1 4.6194 -2.4228 0.4342 34 1 1.0665 -2.0123 -2.7442 35 1 2.7680 -1.7312 -2.3034 36 1 2.3094 -3.2074 -3.1859 37 1 1.8365 -5.0652 -0.2335 38 1 1.9092 -5.0936 -2.0117 39 1 -0.1834 -4.7475 -3.2279 40 1 0.0507 -6.8286 -1.8860 41 1 -0.0395 -6.6462 -0.1177 42 1 -2.6185 -7.7248 -2.6051 43 1 -3.5222 -6.2061 -2.3927 44 1 -1.9404 -6.1938 -3.2089 45 1 -5.0343 -8.3496 -0.8054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677161718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:53 Heat of formation + Delta-G solvation = 10.985220 kcal Electronic energy + Delta-G solvation = -26796.739104 eV Core-core repulsion = 23044.932668 eV Total energy + Delta-G solvation = -3751.806436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41960 -39.65119 -37.40924 -35.37446 -34.70062 -34.48907 -31.66046 -31.24636 -29.86141 -28.54622 -26.96372 -26.48760 -25.78041 -25.36392 -22.89886 -21.61596 -20.76754 -20.57480 -19.15391 -17.68754 -16.94341 -16.56956 -16.16372 -15.96506 -15.74749 -15.06836 -14.88916 -14.70431 -14.48625 -13.77961 -13.71646 -13.53842 -13.31995 -13.08322 -12.98737 -12.88497 -12.82024 -12.57511 -12.45388 -12.17396 -11.87169 -11.50823 -11.10862 -10.80628 -10.66410 -10.60130 -10.46386 -10.35022 -10.09067 -9.93929 -9.82852 -9.80271 -9.73339 -8.67805 -8.52792 -8.36422 -6.60934 -5.66399 -3.12539 1.52979 2.02855 2.62929 2.82546 3.07872 3.45821 3.49922 3.53346 4.26469 4.29751 4.37332 4.55946 4.67090 4.81038 4.90084 4.94044 4.97522 5.12366 5.15270 5.25786 5.33896 5.49117 5.65008 5.74080 5.74643 5.79528 5.88261 5.89282 5.93914 6.01058 6.03580 6.40310 6.47144 6.63103 6.77193 6.85072 6.87338 7.20661 7.45505 7.75492 7.78976 7.88514 8.00684 8.18081 8.47730 9.30675 9.93560 10.42828 11.38409 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.003494 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.963760 B = 8012.070941 C = 8609.824668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.491 5.491 4 C 0.196 3.804 5 N -0.443 5.443 6 C 0.070 3.930 7 C -0.071 4.071 8 C 0.592 3.408 9 O -0.517 6.517 10 N -0.595 5.595 11 C 0.089 3.911 12 C 0.084 3.916 13 C 0.070 3.930 14 H 0.099 0.901 15 O -0.548 6.548 16 C 0.127 3.873 17 N -0.590 5.590 18 C 0.169 3.831 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.907 5.907 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.210 0.790 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.357 0.643 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.001 0.999 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.600 13.121 -4.858 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 N -0.210 5.210 4 C -0.086 4.086 5 N -0.127 5.127 6 C -0.072 4.072 7 C -0.186 4.186 8 C 0.377 3.623 9 O -0.391 6.391 10 N -0.328 5.328 11 C -0.054 4.054 12 C -0.039 4.039 13 C 0.007 3.993 14 H 0.117 0.883 15 O -0.351 6.351 16 C -0.003 4.003 17 N -0.312 5.312 18 C 0.024 3.976 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.552 5.552 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.226 0.774 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.202 0.798 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.019 0.981 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.805 13.766 -3.926 24.437 hybrid contribution 0.141 -0.939 0.357 1.014 sum 19.946 12.827 -3.569 23.981 Atomic orbital electron populations 1.20170 0.86810 1.03258 1.03121 1.20885 0.96506 0.86659 1.03018 1.70019 1.00333 1.30173 1.20476 1.24958 0.97231 0.81556 1.04827 1.45278 1.05769 1.07727 1.53896 1.22130 0.84738 0.96523 1.03843 1.20693 0.84681 0.95112 1.18163 1.16935 0.78180 0.83370 0.83833 1.90885 1.49005 1.68062 1.31178 1.47741 1.68853 1.10284 1.05916 1.21716 1.01684 0.97172 0.84852 1.22466 0.98600 0.79351 1.03470 1.23291 0.89845 0.99294 0.86909 0.88310 1.86658 1.70796 1.62873 1.14738 1.21276 0.87236 0.91965 0.99785 1.43665 0.99672 1.83849 1.03982 1.20716 0.95144 0.97863 0.83854 1.19127 1.00359 1.27011 0.92030 0.91703 1.24994 0.99638 0.96722 0.98087 1.70067 1.21933 1.27481 1.35677 0.86365 0.80569 0.77884 0.81943 1.21005 1.21666 1.20886 0.90634 0.90542 0.90833 0.77352 0.90051 0.88916 0.89539 0.91550 0.92419 0.90892 0.89180 0.90296 0.79807 0.94452 0.92601 0.95957 0.94156 0.98062 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.24 36.00 0.37 -0.65 16 2 C 0.06 0.87 7.15 -82.52 -0.59 0.28 16 3 N -0.49 -6.46 11.20 -10.65 -0.12 -6.58 16 4 C 0.20 1.87 12.52 -90.57 -1.13 0.73 16 5 N -0.44 -4.35 3.12 -121.97 -0.38 -4.73 16 6 C 0.07 0.40 11.06 59.85 0.66 1.06 16 7 C -0.07 -0.94 4.83 -82.14 -0.40 -1.34 16 8 C 0.59 8.92 6.59 -12.81 -0.08 8.84 16 9 O -0.52 -9.88 16.74 5.21 0.09 -9.79 16 10 N -0.60 -7.56 2.84 -183.10 -0.52 -8.08 16 11 C 0.09 0.86 9.87 59.85 0.59 1.45 16 12 C 0.08 1.11 5.07 -4.04 -0.02 1.09 16 13 C 0.07 1.21 3.48 -26.73 -0.09 1.11 16 14 H 0.10 2.13 8.14 -51.93 -0.42 1.70 16 15 O -0.55 -9.17 11.66 -35.23 -0.41 -9.58 16 16 C 0.13 2.52 5.35 -4.04 -0.02 2.50 16 17 N -0.59 -15.04 2.84 -181.11 -0.51 -15.55 16 18 C 0.17 4.20 8.71 59.85 0.52 4.73 16 19 C -0.26 -7.29 9.63 -15.06 -0.14 -7.44 16 20 H 0.07 1.85 7.87 -52.49 -0.41 1.43 16 21 C 0.00 0.11 5.04 -17.43 -0.09 0.03 16 22 N -0.91 -27.14 10.91 55.49 0.61 -26.53 16 23 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 30 H 0.21 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.61 7.80 -51.93 -0.41 0.21 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 6.95 -51.93 -0.36 0.15 16 36 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 37 H 0.09 1.27 7.49 -51.93 -0.39 0.88 16 38 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 39 H 0.36 4.61 8.79 45.56 0.40 5.01 16 40 H 0.04 0.66 8.07 -51.92 -0.42 0.24 16 41 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 42 H 0.02 0.59 7.47 -51.93 -0.39 0.21 16 43 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 44 H 0.00 0.02 6.93 -51.93 -0.36 -0.34 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -37.03 375.31 -7.51 -44.53 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.45 Total: 0.54 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.43 Total: 12.38 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.93 Total: -61.47 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.32 Total: -19.37 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.03 -7.51 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677161718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.520 kcal (2) G-P(sol) polarization free energy of solvation -37.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds