Wall clock time and date at job start Fri Apr 10 2020 18:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99872 * 2 1 4 4 C 1.53003 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46745 * 64.99802 * 4 3 2 6 6 C 1.36940 * 120.00176 * 274.46382 * 5 4 3 7 7 H 1.07993 * 119.99887 * 146.17088 * 6 5 4 8 8 C 1.38817 * 119.99627 * 326.17388 * 6 5 4 9 9 N 1.31614 * 120.00391 * 335.30933 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 155.31079 * 8 6 5 11 11 H 1.48504 * 109.47172 * 89.99509 * 10 8 6 12 12 H 1.48497 * 109.47307 * 209.99644 * 10 8 6 13 13 H 1.48501 * 109.47228 * 330.00201 * 10 8 6 14 14 C 1.46502 * 119.99800 * 94.47243 * 5 4 3 15 15 C 1.53001 * 109.46517 * 269.99489 * 14 5 4 16 16 N 1.46502 * 109.46517 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99460 * 179.97438 * 16 15 14 18 18 O 1.21275 * 120.00281 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99505 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.46772 * 179.97438 * 19 17 16 21 21 C 1.36879 * 126.39721 * 265.01892 * 20 19 17 22 22 C 1.34670 * 106.81633 * 179.97438 * 21 20 19 23 23 N 1.34131 * 108.01886 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25925 * 359.71852 * 23 22 21 25 25 C 1.50697 * 125.65461 * 180.29148 * 24 23 22 26 26 H 1.09002 * 109.46931 * 60.00396 * 1 2 3 27 27 H 1.08997 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46787 * 300.00130 * 1 2 3 29 29 H 1.09005 * 109.47575 * 59.99923 * 3 2 1 30 30 H 1.09001 * 109.47095 * 299.99567 * 3 2 1 31 31 H 1.09002 * 109.46924 * 304.99969 * 4 3 2 32 32 H 1.08998 * 109.47538 * 185.00093 * 4 3 2 33 33 H 0.96994 * 120.00067 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46717 * 149.99823 * 14 5 4 35 35 H 1.08994 * 109.47218 * 29.99427 * 14 5 4 36 36 H 1.08991 * 109.47152 * 60.00619 * 15 14 5 37 37 H 1.08994 * 109.47326 * 299.99871 * 15 14 5 38 38 H 0.97004 * 120.00373 * 0.02562 * 16 15 14 39 39 H 1.08994 * 109.46978 * 299.99801 * 19 17 16 40 40 H 1.08995 * 109.47540 * 60.00496 * 19 17 16 41 41 H 1.07994 * 126.59152 * 0.04596 * 21 20 19 42 42 H 1.08003 * 125.98987 * 179.97438 * 22 21 20 43 43 H 1.08994 * 109.47130 * 270.18200 * 25 24 23 44 44 H 1.09010 * 109.46528 * 30.17910 * 25 24 23 45 45 H 1.09003 * 109.47104 * 150.17387 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0104 -0.8003 -1.3639 7 1 3.7921 -1.2691 -2.3120 8 6 4.3250 -1.5806 -0.2598 9 7 5.0415 -1.0742 0.7213 10 14 3.7316 -3.3494 -0.1665 11 1 4.7466 -4.2449 -0.7776 12 1 3.5281 -3.7289 1.2546 13 1 2.4486 -3.4805 -0.9026 14 6 4.3820 1.4029 -2.3815 15 6 3.1636 1.7014 -3.2575 16 7 3.5688 2.5408 -4.3878 17 6 2.6552 2.9315 -5.2985 18 8 1.4980 2.5878 -5.1825 19 6 3.0722 3.7945 -6.4615 20 7 1.9057 4.0794 -7.3009 21 6 1.5214 3.3890 -8.4186 22 6 0.4034 3.9829 -8.8781 23 7 0.1135 5.0082 -8.0635 24 6 1.0058 5.0687 -7.1132 25 6 1.0300 6.0773 -5.9938 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8465 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9785 2.1766 0.0902 33 1 5.2616 -1.6196 1.4926 34 1 5.1341 0.8790 -2.9714 35 1 4.7993 2.3383 -2.0087 36 1 2.4116 2.2252 -2.6677 37 1 2.7463 0.7660 -3.6303 38 1 4.4946 2.8147 -4.4811 39 1 3.4891 4.7300 -6.0886 40 1 3.8245 3.2709 -7.0512 41 1 2.0184 2.5321 -8.8486 42 1 -0.1603 3.6861 -9.7502 43 1 1.6060 6.9494 -6.3030 44 1 0.0104 6.3808 -5.7562 45 1 1.4910 5.6310 -5.1126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677321567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:11 Heat of formation + Delta-G solvation = 11.654817 kcal Electronic energy + Delta-G solvation = -26059.034215 eV Core-core repulsion = 22307.256815 eV Total energy + Delta-G solvation = -3751.777400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22260 -39.53685 -37.30728 -35.87550 -34.32935 -34.09382 -31.83983 -31.49032 -29.76765 -28.49427 -27.13994 -26.58148 -25.64117 -23.94136 -22.02418 -21.48091 -20.98620 -20.37568 -19.68967 -17.59483 -17.32258 -16.79486 -15.85682 -15.73501 -15.38650 -15.17003 -14.89392 -14.59751 -14.50079 -14.07220 -13.91621 -13.70089 -13.60488 -13.28205 -13.11363 -12.90985 -12.75544 -12.48036 -12.39387 -12.00808 -11.83579 -11.24802 -10.91449 -10.79879 -10.71051 -10.61898 -10.40327 -10.09191 -10.05526 -10.00164 -9.75836 -9.52613 -8.98166 -8.72909 -8.44875 -8.39266 -6.68564 -5.77360 -3.30394 1.86502 2.46083 2.50215 3.10144 3.24927 3.42284 3.50020 3.58347 4.36953 4.38805 4.47610 4.57972 4.65197 4.70170 4.71661 5.16574 5.31511 5.31823 5.36569 5.48472 5.63583 5.66460 5.73015 5.75378 5.79644 5.87288 6.03901 6.14625 6.16541 6.22364 6.23215 6.44289 6.54659 6.56650 6.61028 6.68102 6.81377 7.03093 7.47411 7.62196 7.83425 8.03596 8.08605 8.14015 8.50524 9.15535 9.82009 10.31725 11.24359 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.003005 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.404501 B = 9315.541224 C = 9552.264137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.136 3.864 5 N -0.570 5.570 6 C -0.248 4.248 7 H 0.058 0.942 8 C 0.025 3.975 9 N -0.889 5.889 10 Si 0.898 3.102 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.718 5.718 17 C 0.488 3.512 18 O -0.523 6.523 19 C 0.083 3.917 20 N -0.441 5.441 21 C -0.051 4.051 22 C -0.028 4.028 23 N -0.494 5.494 24 C 0.219 3.781 25 C -0.069 4.069 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.253 0.747 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 12.508 -11.329 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.289 5.289 6 C -0.377 4.377 7 H 0.075 0.925 8 C -0.175 4.175 9 N -0.532 5.532 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.370 5.370 17 C 0.270 3.730 18 O -0.398 6.398 19 C -0.044 4.044 20 N -0.124 5.124 21 C -0.183 4.183 22 C -0.176 4.176 23 N -0.213 5.213 24 C -0.044 4.044 25 C -0.127 4.127 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.488 12.477 -11.060 16.858 hybrid contribution 0.413 -1.295 0.112 1.364 sum -2.075 11.182 -10.948 15.786 Atomic orbital electron populations 1.22641 0.84281 1.01495 0.98439 1.88232 1.16495 1.27386 1.94796 1.23447 0.98614 0.84360 0.96837 1.21173 0.87921 0.96541 0.93361 1.43590 1.74006 1.02399 1.08952 1.18794 1.41298 0.80666 0.96989 0.92455 1.24872 0.96751 0.97732 0.98180 1.69957 1.36158 1.36819 1.10275 0.86391 0.79089 0.84801 0.76919 1.21859 1.21639 1.20264 1.20994 0.92607 0.94857 0.90533 1.22568 1.00874 0.93603 0.85952 1.46077 1.11544 1.52856 1.26548 1.20656 0.86651 0.81778 0.83876 1.90802 1.18342 1.55434 1.75212 1.21723 0.87859 1.02283 0.92520 1.44843 1.21661 1.24683 1.21244 1.22637 1.01654 1.01980 0.91997 1.22214 0.97282 0.96039 1.02034 1.70228 1.24741 1.21311 1.05059 1.23221 0.88429 0.93525 0.99185 1.20177 1.04766 0.95003 0.92771 0.95212 0.90755 0.95559 0.95825 0.95418 0.87425 0.94089 0.93665 0.92620 0.94244 0.92231 0.91487 0.76787 0.86195 0.86000 0.81020 0.81386 0.90249 0.89097 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.93 9.96 -35.23 -0.35 -8.29 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.14 3.03 5.83 -4.04 -0.02 3.01 16 5 N -0.57 -13.19 2.45 -173.23 -0.43 -13.61 16 6 C -0.25 -6.56 8.74 -15.06 -0.13 -6.69 16 7 H 0.06 1.54 7.94 -52.49 -0.42 1.13 16 8 C 0.02 0.67 4.95 -17.43 -0.09 0.58 16 9 N -0.89 -24.94 11.36 55.49 0.63 -24.31 16 10 Si 0.90 22.11 29.62 -169.99 -5.03 17.07 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.14 2.51 5.82 -4.04 -0.02 2.48 16 15 C 0.10 1.60 6.00 -4.04 -0.02 1.58 16 16 N -0.72 -8.69 5.56 -60.30 -0.33 -9.03 16 17 C 0.49 6.32 7.90 -10.98 -0.09 6.23 16 18 O -0.52 -9.63 16.41 5.56 0.09 -9.54 16 19 C 0.08 0.71 6.15 -5.19 -0.03 0.68 16 20 N -0.44 -5.17 2.24 -115.19 -0.26 -5.42 16 21 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 22 C -0.03 -0.36 11.87 -17.81 -0.21 -0.58 16 23 N -0.49 -7.35 11.25 -10.82 -0.12 -7.47 16 24 C 0.22 2.86 7.88 -155.42 -1.23 1.63 16 25 C -0.07 -0.66 10.04 36.00 0.36 -0.30 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.55 6.47 -51.93 -0.34 0.21 16 31 H 0.11 2.79 5.37 -51.93 -0.28 2.51 16 32 H 0.04 0.81 7.84 -51.93 -0.41 0.40 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 36 H 0.06 1.09 6.47 -51.93 -0.34 0.76 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 39 H 0.12 0.64 7.94 -51.93 -0.41 0.23 16 40 H 0.12 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 45 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -35.78 378.04 -7.56 -43.34 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.13 Total: 0.91 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.33 Total: 10.64 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.51 Total: -59.84 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.26 Total: -17.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.78 -7.56 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.996 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds