Wall clock time and date at job start Fri Apr 10 2020 18:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99872 * 2 1 4 4 C 1.53003 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46745 * 64.99802 * 4 3 2 6 6 C 1.36940 * 120.00176 * 274.46382 * 5 4 3 7 7 H 1.07993 * 119.99887 * 146.17088 * 6 5 4 8 8 C 1.38817 * 119.99627 * 326.17388 * 6 5 4 9 9 N 1.31614 * 120.00391 * 335.30933 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 155.31079 * 8 6 5 11 11 H 1.48504 * 109.47172 * 89.99509 * 10 8 6 12 12 H 1.48497 * 109.47307 * 209.99644 * 10 8 6 13 13 H 1.48501 * 109.47228 * 330.00201 * 10 8 6 14 14 C 1.46502 * 119.99800 * 94.47243 * 5 4 3 15 15 C 1.53001 * 109.46517 * 269.99489 * 14 5 4 16 16 N 1.46502 * 109.46517 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99460 * 179.97438 * 16 15 14 18 18 O 1.21275 * 120.00281 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99505 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.46772 * 179.97438 * 19 17 16 21 21 C 1.36879 * 126.39721 * 265.01892 * 20 19 17 22 22 C 1.34670 * 106.81633 * 179.97438 * 21 20 19 23 23 N 1.34131 * 108.01886 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25925 * 359.71852 * 23 22 21 25 25 C 1.50697 * 125.65461 * 180.29148 * 24 23 22 26 26 H 1.09002 * 109.46931 * 60.00396 * 1 2 3 27 27 H 1.08997 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46787 * 300.00130 * 1 2 3 29 29 H 1.09005 * 109.47575 * 59.99923 * 3 2 1 30 30 H 1.09001 * 109.47095 * 299.99567 * 3 2 1 31 31 H 1.09002 * 109.46924 * 304.99969 * 4 3 2 32 32 H 1.08998 * 109.47538 * 185.00093 * 4 3 2 33 33 H 0.96994 * 120.00067 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46717 * 149.99823 * 14 5 4 35 35 H 1.08994 * 109.47218 * 29.99427 * 14 5 4 36 36 H 1.08991 * 109.47152 * 60.00619 * 15 14 5 37 37 H 1.08994 * 109.47326 * 299.99871 * 15 14 5 38 38 H 0.97004 * 120.00373 * 0.02562 * 16 15 14 39 39 H 1.08994 * 109.46978 * 299.99801 * 19 17 16 40 40 H 1.08995 * 109.47540 * 60.00496 * 19 17 16 41 41 H 1.07994 * 126.59152 * 0.04596 * 21 20 19 42 42 H 1.08003 * 125.98987 * 179.97438 * 22 21 20 43 43 H 1.08994 * 109.47130 * 270.18200 * 25 24 23 44 44 H 1.09010 * 109.46528 * 30.17910 * 25 24 23 45 45 H 1.09003 * 109.47104 * 150.17387 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0104 -0.8003 -1.3639 7 1 3.7921 -1.2691 -2.3120 8 6 4.3250 -1.5806 -0.2598 9 7 5.0415 -1.0742 0.7213 10 14 3.7316 -3.3494 -0.1665 11 1 4.7466 -4.2449 -0.7776 12 1 3.5281 -3.7289 1.2546 13 1 2.4486 -3.4805 -0.9026 14 6 4.3820 1.4029 -2.3815 15 6 3.1636 1.7014 -3.2575 16 7 3.5688 2.5408 -4.3878 17 6 2.6552 2.9315 -5.2985 18 8 1.4980 2.5878 -5.1825 19 6 3.0722 3.7945 -6.4615 20 7 1.9057 4.0794 -7.3009 21 6 1.5214 3.3890 -8.4186 22 6 0.4034 3.9829 -8.8781 23 7 0.1135 5.0082 -8.0635 24 6 1.0058 5.0687 -7.1132 25 6 1.0300 6.0773 -5.9938 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8465 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9785 2.1766 0.0902 33 1 5.2616 -1.6196 1.4926 34 1 5.1341 0.8790 -2.9714 35 1 4.7993 2.3383 -2.0087 36 1 2.4116 2.2252 -2.6677 37 1 2.7463 0.7660 -3.6303 38 1 4.4946 2.8147 -4.4811 39 1 3.4891 4.7300 -6.0886 40 1 3.8245 3.2709 -7.0512 41 1 2.0184 2.5321 -8.8486 42 1 -0.1603 3.6861 -9.7502 43 1 1.6060 6.9494 -6.3030 44 1 0.0104 6.3808 -5.7562 45 1 1.4910 5.6310 -5.1126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677321567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:11 Heat of formation + Delta-G solvation = -13.592106 kcal Electronic energy + Delta-G solvation = -26060.129004 eV Core-core repulsion = 22307.256815 eV Total energy + Delta-G solvation = -3752.872189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.09154 -40.65221 -38.94006 -37.43920 -35.74602 -34.99151 -33.35374 -32.63594 -31.22663 -29.81163 -28.32037 -27.54576 -27.17816 -25.65229 -23.47581 -22.40000 -22.21997 -21.88711 -20.63915 -18.82339 -18.44417 -18.17755 -17.41945 -16.84040 -16.79157 -16.45542 -16.37042 -16.02545 -15.71110 -15.49042 -15.26315 -15.06205 -14.63917 -14.60408 -14.37736 -13.92748 -13.63849 -13.47575 -13.44039 -13.24165 -13.22666 -13.01985 -12.70442 -12.47207 -12.41494 -12.30603 -11.94889 -11.73633 -11.55327 -11.48293 -10.99240 -10.56435 -10.41964 -10.37853 -10.09278 -9.27094 -8.59593 -7.77857 -5.32427 0.97320 1.44051 1.47244 1.49636 1.59414 1.71340 2.17497 2.25718 2.59409 3.18587 3.35278 3.58162 3.60794 3.77425 3.80664 3.93719 4.13626 4.21425 4.29460 4.39370 4.43060 4.48193 4.55536 4.55951 4.68948 4.69775 4.71396 4.78296 4.83772 4.88281 4.94528 5.00360 5.10615 5.19699 5.30713 5.45158 5.71758 5.82913 5.83338 6.18305 6.43785 6.52163 6.64261 7.13702 7.17830 7.22881 7.92245 8.37396 9.19051 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.003005 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.404501 B = 9315.541224 C = 9552.264137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.053 3.947 4 C 0.135 3.865 5 N -0.587 5.587 6 C -0.244 4.244 7 H 0.044 0.956 8 C -0.016 4.016 9 N -0.911 5.911 10 Si 0.939 3.061 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.284 1.284 14 C 0.142 3.858 15 C 0.119 3.881 16 N -0.702 5.702 17 C 0.489 3.511 18 O -0.583 6.583 19 C 0.089 3.911 20 N -0.445 5.445 21 C -0.051 4.051 22 C -0.057 4.057 23 N -0.536 5.536 24 C 0.202 3.798 25 C -0.067 4.067 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.249 0.751 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.028 0.972 38 H 0.421 0.579 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.201 0.799 42 H 0.183 0.817 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 13.969 -12.194 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.307 5.307 6 C -0.374 4.374 7 H 0.062 0.938 8 C -0.213 4.213 9 N -0.556 5.556 10 Si 0.769 3.231 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.210 1.210 14 C 0.015 3.985 15 C -0.008 4.008 16 N -0.356 5.356 17 C 0.275 3.725 18 O -0.462 6.462 19 C -0.036 4.036 20 N -0.128 5.128 21 C -0.183 4.183 22 C -0.203 4.203 23 N -0.256 5.256 24 C -0.061 4.061 25 C -0.125 4.125 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.259 0.741 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.217 0.783 42 H 0.200 0.800 43 H 0.125 0.875 44 H 0.102 0.898 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.378 13.967 -11.954 18.436 hybrid contribution 0.033 -1.706 0.325 1.737 sum -1.345 12.261 -11.629 16.952 Atomic orbital electron populations 1.22786 0.82082 1.02412 0.99770 1.88156 1.19088 1.28811 1.95118 1.23345 0.97279 0.83918 0.98064 1.21120 0.89384 0.96803 0.91865 1.43740 1.74569 1.01925 1.10479 1.18839 1.39697 0.82601 0.96268 0.93824 1.25297 0.97626 0.99956 0.98446 1.70044 1.37554 1.37426 1.10602 0.85737 0.78384 0.82626 0.76317 1.21243 1.22095 1.21030 1.21065 0.92936 0.95264 0.89224 1.21915 0.99559 0.92478 0.86826 1.45776 1.12837 1.51777 1.25162 1.21440 0.85583 0.81109 0.84413 1.90792 1.20975 1.57753 1.76668 1.22018 0.87249 1.03598 0.90739 1.45043 1.22253 1.24161 1.21375 1.23138 1.01229 1.02152 0.91797 1.22646 0.98454 0.96338 1.02876 1.70179 1.26226 1.22767 1.06431 1.23802 0.88446 0.94377 0.99447 1.20279 1.04941 0.95305 0.91969 0.94769 0.90183 0.93177 0.93561 0.94924 0.90957 0.91666 0.94183 0.92551 0.91304 0.93725 0.95324 0.74097 0.82174 0.82082 0.78253 0.80019 0.87502 0.89844 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.16 16 2 O -0.39 -17.63 9.96 -148.98 -1.48 -19.12 16 3 C 0.05 2.08 6.28 71.98 0.45 2.53 16 4 C 0.13 5.88 5.83 86.38 0.50 6.38 16 5 N -0.59 -26.82 2.45 -701.99 -1.72 -28.54 16 6 C -0.24 -12.95 8.74 84.03 0.73 -12.21 16 7 H 0.04 2.39 7.94 -2.91 -0.02 2.37 16 8 C -0.02 -0.87 4.95 84.86 0.42 -0.45 16 9 N -0.91 -51.65 11.36 21.65 0.25 -51.40 16 10 Si 0.94 45.89 29.62 68.60 2.03 47.93 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 14 C 0.14 4.89 5.82 86.38 0.50 5.40 16 15 C 0.12 3.87 6.00 86.38 0.52 4.38 16 16 N -0.70 -15.05 5.56 -463.07 -2.57 -17.63 16 17 C 0.49 11.46 7.90 87.66 0.69 12.15 16 18 O -0.58 -21.07 16.41 -3.01 -0.05 -21.12 16 19 C 0.09 1.15 6.15 85.63 0.53 1.68 16 20 N -0.45 -9.34 2.24 -518.35 -1.16 -10.50 16 21 C -0.05 -1.09 11.58 83.09 0.96 -0.12 16 22 C -0.06 -1.43 11.87 83.52 0.99 -0.44 16 23 N -0.54 -15.80 11.25 -188.13 -2.12 -17.92 16 24 C 0.20 5.00 7.88 138.13 1.09 6.09 16 25 C -0.07 -1.16 10.04 71.23 0.72 -0.45 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.03 1.25 6.47 -2.39 -0.02 1.23 16 31 H 0.07 3.77 5.37 -2.39 -0.01 3.76 16 32 H 0.07 2.46 7.84 -2.39 -0.02 2.44 16 33 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 34 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 35 H 0.07 2.00 7.86 -2.39 -0.02 1.98 16 36 H 0.04 1.60 6.47 -2.39 -0.02 1.58 16 37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.42 5.31 8.47 -92.71 -0.79 4.53 16 39 H 0.16 0.84 7.94 -2.39 -0.02 0.82 16 40 H 0.16 0.89 8.13 -2.39 -0.02 0.87 16 41 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.08 1.23 7.84 -2.39 -0.02 1.21 16 Total: -1.00 -81.03 378.04 2.73 -78.30 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.20 Total: 12.90 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 9.36 Total: 27.09 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -7.33 Total: -125.99 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.53 Total: -40.23 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.93 kcal Total: -81.03 2.73 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.712 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds