Wall clock time and date at job start Fri Apr 10 2020 18:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.18161 * 2 1 4 4 C 1.52993 * 109.21333 * 240.64645 * 2 1 3 5 5 N 1.47274 * 108.18087 * 286.40601 * 4 2 1 6 6 C 1.34775 * 121.35333 * 118.47542 * 5 4 2 7 7 O 1.21591 * 120.00251 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00050 * 180.02562 * 8 6 5 10 10 C 1.53035 * 109.45964 * 275.06721 * 9 8 6 11 11 C 1.53187 * 109.31318 * 178.61618 * 10 9 8 12 12 N 1.46925 * 108.77848 * 54.63420 * 11 10 9 13 13 C 1.36935 * 120.63167 * 126.36835 * 12 11 10 14 14 H 1.07996 * 120.00061 * 207.98524 * 13 12 11 15 15 C 1.38819 * 119.99978 * 27.98730 * 13 12 11 16 16 N 1.31612 * 119.99906 * 17.50200 * 15 13 12 17 17 Si 1.86796 * 119.99980 * 197.50044 * 15 13 12 18 18 H 1.48499 * 109.46892 * 94.06412 * 17 15 13 19 19 H 1.48498 * 109.47084 * 214.06677 * 17 15 13 20 20 H 1.48504 * 109.47284 * 334.06864 * 17 15 13 21 21 C 1.46927 * 118.73629 * 306.39406 * 12 11 10 22 22 C 1.53039 * 109.45869 * 154.99794 * 9 8 6 23 23 C 1.47049 * 117.29275 * 298.48792 * 5 4 2 24 24 C 1.50432 * 108.89065 * 42.72988 * 23 5 4 25 25 O 1.21281 * 118.49110 * 167.29479 * 24 23 5 26 26 N 1.33381 * 123.02423 * 347.31448 * 24 23 5 27 27 H 1.09001 * 109.46451 * 300.63555 * 1 2 3 28 28 H 1.09002 * 109.47222 * 60.62862 * 1 2 3 29 29 H 1.08997 * 109.47425 * 180.63648 * 1 2 3 30 30 H 1.09008 * 109.71759 * 46.06944 * 4 2 1 31 31 H 1.09002 * 109.71785 * 166.72079 * 4 2 1 32 32 H 0.97005 * 119.99784 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46226 * 35.02460 * 9 8 6 34 34 H 1.09002 * 109.49714 * 298.56659 * 10 9 8 35 35 H 1.09001 * 109.49729 * 58.66218 * 10 9 8 36 36 H 1.09000 * 109.58692 * 294.84375 * 11 10 9 37 37 H 1.09006 * 109.58956 * 174.42270 * 11 10 9 38 38 H 0.96998 * 120.00029 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58547 * 293.81850 * 21 12 11 40 40 H 1.09005 * 109.58451 * 173.39456 * 21 12 11 41 41 H 1.09002 * 109.50021 * 301.33468 * 22 9 8 42 42 H 1.09002 * 109.49652 * 61.40639 * 22 9 8 43 43 H 1.08999 * 109.56391 * 282.90985 * 23 5 4 44 44 H 1.08999 * 109.66846 * 162.61316 * 23 5 4 45 45 H 0.97008 * 117.70375 * 184.32031 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0335 -0.7082 -1.2592 5 7 1.8115 -2.1546 -1.0928 6 6 1.0066 -2.8411 -1.9278 7 8 0.4465 -2.2668 -2.8415 8 7 0.8225 -4.1644 -1.7500 9 6 -0.0520 -4.9108 -2.6579 10 6 -1.5016 -4.7923 -2.1818 11 6 -2.4169 -5.5450 -3.1526 12 7 -1.9352 -6.9270 -3.2815 13 6 -2.7794 -7.9832 -3.0650 14 1 -2.3857 -8.9265 -2.7164 15 6 -4.1412 -7.8414 -3.2935 16 7 -4.5848 -6.8435 -4.0281 17 14 -5.3442 -9.0669 -2.5585 18 1 -5.8478 -8.5488 -1.2611 19 1 -6.4842 -9.2612 -3.4901 20 1 -4.6569 -10.3650 -2.3398 21 6 -0.5303 -7.1543 -3.6467 22 6 0.3639 -6.3836 -2.6704 23 6 2.5036 -2.8191 0.0215 24 6 2.4107 -1.9457 1.2428 25 8 2.7142 -2.4194 2.3172 26 7 2.0095 -0.6745 1.1985 27 1 -0.3632 0.5237 0.8843 28 1 -0.3634 0.5040 -0.8956 29 1 -0.3634 -1.0276 0.0114 30 1 1.4822 -0.3491 -2.1284 31 1 3.0975 -0.5119 -1.3910 32 1 1.2696 -4.6227 -1.0212 33 1 0.0341 -4.5006 -3.6641 34 1 -1.5938 -5.2248 -1.1855 35 1 -1.7896 -3.7415 -2.1508 36 1 -2.3950 -5.0579 -4.1275 37 1 -3.4361 -5.5479 -2.7661 38 1 -5.5365 -6.7442 -4.1875 39 1 -0.3545 -6.7984 -4.6619 40 1 -0.3046 -8.2190 -3.5863 41 1 1.4036 -6.4653 -2.9872 42 1 0.2546 -6.8009 -1.6694 43 1 3.5508 -2.9726 -0.2388 44 1 2.0330 -3.7812 0.2241 45 1 2.0394 -0.1632 2.0224 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684056798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:19 Heat of formation + Delta-G solvation = -31.013477 kcal Electronic energy + Delta-G solvation = -26846.685003 eV Core-core repulsion = 23093.057367 eV Total energy + Delta-G solvation = -3753.627636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14046 -39.58466 -37.73861 -36.85145 -34.82995 -34.36283 -32.12632 -31.40819 -30.04180 -29.46910 -28.20528 -26.76624 -24.81866 -23.11931 -22.25557 -21.98980 -20.62871 -19.58171 -19.22998 -18.39277 -17.50101 -16.99473 -16.60815 -16.21297 -15.69391 -15.14669 -14.89115 -14.69770 -14.33270 -14.19274 -13.87503 -13.69903 -13.51146 -13.06922 -12.96057 -12.77929 -12.56882 -12.34748 -12.30911 -11.84291 -11.69810 -11.47590 -11.12845 -10.93056 -10.74321 -10.70530 -10.38128 -10.21898 -10.09629 -10.01118 -9.76247 -9.58736 -9.55120 -9.03502 -8.64545 -8.40739 -6.68755 -5.78205 -3.20989 2.17818 2.30914 2.87222 3.20046 3.38591 3.45746 3.46955 3.77696 4.03277 4.25327 4.50087 4.58224 4.62958 4.77856 4.94606 5.20672 5.28478 5.33595 5.40444 5.43899 5.45923 5.49438 5.63672 5.82171 5.88643 5.96622 6.07778 6.23083 6.31302 6.36306 6.42621 6.54120 6.65629 6.70330 6.80688 6.88537 6.93523 6.97596 7.38429 7.67967 7.74913 7.80527 7.91677 8.45322 8.58611 9.21392 9.84712 10.41263 11.30342 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003137 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.203604 B = 8924.954720 C = 8942.886673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 H 0.098 0.902 4 C 0.119 3.881 5 N -0.638 5.638 6 C 0.711 3.289 7 O -0.578 6.578 8 N -0.738 5.738 9 C 0.167 3.833 10 C -0.147 4.147 11 C 0.174 3.826 12 N -0.593 5.593 13 C -0.255 4.255 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.149 3.851 22 C -0.139 4.139 23 C 0.100 3.900 24 C 0.515 3.485 25 O -0.549 6.549 26 N -0.710 5.710 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.389 0.611 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.668 14.062 7.598 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.116 0.884 4 C -0.005 4.005 5 N -0.379 5.379 6 C 0.413 3.587 7 O -0.455 6.455 8 N -0.392 5.392 9 C 0.064 3.936 10 C -0.187 4.187 11 C 0.048 3.952 12 N -0.315 5.315 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.022 3.978 22 C -0.179 4.179 23 C -0.027 4.027 24 C 0.301 3.699 25 O -0.426 6.426 26 N -0.362 5.362 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.191 14.076 7.155 21.912 hybrid contribution -0.470 -0.500 1.128 1.320 sum 14.722 13.576 8.283 21.672 Atomic orbital electron populations 1.22229 0.94114 1.03340 1.02634 1.21443 0.95512 0.96680 0.84869 0.88415 1.21861 1.01643 0.78900 0.98095 1.47338 1.50336 1.08997 1.31202 1.15792 0.79085 0.82050 0.81794 1.90940 1.52517 1.68557 1.33456 1.45721 1.51791 1.06813 1.34885 1.20966 0.89185 0.90591 0.92864 1.22579 0.94889 1.00125 1.01113 1.20752 0.97009 0.82829 0.94624 1.44110 1.05256 1.02341 1.79824 1.19196 0.88367 0.92921 1.37998 0.91599 1.25049 0.98097 0.98188 0.98211 1.70041 1.13492 1.32701 1.38217 0.86284 0.81003 0.80874 0.78656 1.21501 1.21776 1.20379 1.20835 0.85532 0.97373 0.94062 1.22358 0.99231 0.94303 1.02045 1.21742 1.00242 0.96730 0.83940 1.20271 0.76308 0.82570 0.90757 1.90816 1.50035 1.72079 1.29692 1.45480 1.65468 1.12163 1.13090 0.92243 0.90727 0.92000 0.86565 0.90513 0.77564 0.89891 0.92811 0.92851 0.96081 0.89354 0.93600 0.96127 0.92297 0.92585 0.91877 0.87773 0.86899 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.37 37.16 0.35 -1.00 16 2 C 0.12 0.77 3.87 -68.40 -0.26 0.51 16 3 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 4 C 0.12 0.93 5.89 -3.62 -0.02 0.91 16 5 N -0.64 -6.51 2.75 -179.88 -0.49 -7.00 16 6 C 0.71 10.08 8.30 -86.92 -0.72 9.36 16 7 O -0.58 -10.37 15.49 5.29 0.08 -10.29 16 8 N -0.74 -10.15 4.98 -58.64 -0.29 -10.44 16 9 C 0.17 2.86 2.41 -67.89 -0.16 2.69 16 10 C -0.15 -2.90 5.65 -26.62 -0.15 -3.05 16 11 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 12 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 13 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 14 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 16 N -0.90 -26.24 11.22 55.49 0.62 -25.61 16 17 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 22 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 23 C 0.10 0.87 6.43 -5.02 -0.03 0.83 16 24 C 0.52 5.22 7.84 -11.74 -0.09 5.13 16 25 O -0.55 -7.59 17.80 5.56 0.10 -7.49 16 26 N -0.71 -5.43 5.00 -54.79 -0.27 -5.71 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.70 7.99 -51.93 -0.42 0.29 16 30 H 0.12 1.05 6.98 -51.92 -0.36 0.68 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.39 4.37 6.24 -40.82 -0.25 4.12 16 33 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 0.96 5.96 -51.93 -0.31 0.65 16 45 H 0.40 2.62 8.80 -40.82 -0.36 2.26 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -34.07 356.06 -8.98 -43.05 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.02 Total: 3.62 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -1.52 Total: 13.07 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.95 Total: -63.97 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.07 -8.98 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.034 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds