Wall clock time and date at job start Fri Apr 10 2020 18:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.18161 * 2 1 4 4 C 1.52993 * 109.21333 * 240.64645 * 2 1 3 5 5 N 1.47274 * 108.18087 * 286.40601 * 4 2 1 6 6 C 1.34775 * 121.35333 * 118.47542 * 5 4 2 7 7 O 1.21591 * 120.00251 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00050 * 180.02562 * 8 6 5 10 10 C 1.53035 * 109.45964 * 275.06721 * 9 8 6 11 11 C 1.53187 * 109.31318 * 178.61618 * 10 9 8 12 12 N 1.46925 * 108.77848 * 54.63420 * 11 10 9 13 13 C 1.36935 * 120.63167 * 126.36835 * 12 11 10 14 14 H 1.07996 * 120.00061 * 207.98524 * 13 12 11 15 15 C 1.38819 * 119.99978 * 27.98730 * 13 12 11 16 16 N 1.31612 * 119.99906 * 17.50200 * 15 13 12 17 17 Si 1.86796 * 119.99980 * 197.50044 * 15 13 12 18 18 H 1.48499 * 109.46892 * 94.06412 * 17 15 13 19 19 H 1.48498 * 109.47084 * 214.06677 * 17 15 13 20 20 H 1.48504 * 109.47284 * 334.06864 * 17 15 13 21 21 C 1.46927 * 118.73629 * 306.39406 * 12 11 10 22 22 C 1.53039 * 109.45869 * 154.99794 * 9 8 6 23 23 C 1.47049 * 117.29275 * 298.48792 * 5 4 2 24 24 C 1.50432 * 108.89065 * 42.72988 * 23 5 4 25 25 O 1.21281 * 118.49110 * 167.29479 * 24 23 5 26 26 N 1.33381 * 123.02423 * 347.31448 * 24 23 5 27 27 H 1.09001 * 109.46451 * 300.63555 * 1 2 3 28 28 H 1.09002 * 109.47222 * 60.62862 * 1 2 3 29 29 H 1.08997 * 109.47425 * 180.63648 * 1 2 3 30 30 H 1.09008 * 109.71759 * 46.06944 * 4 2 1 31 31 H 1.09002 * 109.71785 * 166.72079 * 4 2 1 32 32 H 0.97005 * 119.99784 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46226 * 35.02460 * 9 8 6 34 34 H 1.09002 * 109.49714 * 298.56659 * 10 9 8 35 35 H 1.09001 * 109.49729 * 58.66218 * 10 9 8 36 36 H 1.09000 * 109.58692 * 294.84375 * 11 10 9 37 37 H 1.09006 * 109.58956 * 174.42270 * 11 10 9 38 38 H 0.96998 * 120.00029 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58547 * 293.81850 * 21 12 11 40 40 H 1.09005 * 109.58451 * 173.39456 * 21 12 11 41 41 H 1.09002 * 109.50021 * 301.33468 * 22 9 8 42 42 H 1.09002 * 109.49652 * 61.40639 * 22 9 8 43 43 H 1.08999 * 109.56391 * 282.90985 * 23 5 4 44 44 H 1.08999 * 109.66846 * 162.61316 * 23 5 4 45 45 H 0.97008 * 117.70375 * 184.32031 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0335 -0.7082 -1.2592 5 7 1.8115 -2.1546 -1.0928 6 6 1.0066 -2.8411 -1.9278 7 8 0.4465 -2.2668 -2.8415 8 7 0.8225 -4.1644 -1.7500 9 6 -0.0520 -4.9108 -2.6579 10 6 -1.5016 -4.7923 -2.1818 11 6 -2.4169 -5.5450 -3.1526 12 7 -1.9352 -6.9270 -3.2815 13 6 -2.7794 -7.9832 -3.0650 14 1 -2.3857 -8.9265 -2.7164 15 6 -4.1412 -7.8414 -3.2935 16 7 -4.5848 -6.8435 -4.0281 17 14 -5.3442 -9.0669 -2.5585 18 1 -5.8478 -8.5488 -1.2611 19 1 -6.4842 -9.2612 -3.4901 20 1 -4.6569 -10.3650 -2.3398 21 6 -0.5303 -7.1543 -3.6467 22 6 0.3639 -6.3836 -2.6704 23 6 2.5036 -2.8191 0.0215 24 6 2.4107 -1.9457 1.2428 25 8 2.7142 -2.4194 2.3172 26 7 2.0095 -0.6745 1.1985 27 1 -0.3632 0.5237 0.8843 28 1 -0.3634 0.5040 -0.8956 29 1 -0.3634 -1.0276 0.0114 30 1 1.4822 -0.3491 -2.1284 31 1 3.0975 -0.5119 -1.3910 32 1 1.2696 -4.6227 -1.0212 33 1 0.0341 -4.5006 -3.6641 34 1 -1.5938 -5.2248 -1.1855 35 1 -1.7896 -3.7415 -2.1508 36 1 -2.3950 -5.0579 -4.1275 37 1 -3.4361 -5.5479 -2.7661 38 1 -5.5365 -6.7442 -4.1875 39 1 -0.3545 -6.7984 -4.6619 40 1 -0.3046 -8.2190 -3.5863 41 1 1.4036 -6.4653 -2.9872 42 1 0.2546 -6.8009 -1.6694 43 1 3.5508 -2.9726 -0.2388 44 1 2.0330 -3.7812 0.2241 45 1 2.0394 -0.1632 2.0224 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684056798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:18 Heat of formation + Delta-G solvation = -56.254726 kcal Electronic energy + Delta-G solvation = -26847.779546 eV Core-core repulsion = 23093.057367 eV Total energy + Delta-G solvation = -3754.722179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01100 -40.64132 -39.14929 -37.85075 -36.06214 -35.58520 -33.81133 -32.21501 -31.71346 -31.13166 -28.93676 -27.78788 -26.52705 -23.99304 -23.90900 -23.44512 -21.72556 -21.12167 -19.94662 -19.56064 -18.69711 -18.29166 -17.66398 -17.04020 -16.97200 -16.59499 -16.12703 -15.79268 -15.48099 -15.35280 -15.20553 -15.05995 -14.76460 -14.65426 -14.23325 -14.05674 -13.66989 -13.47563 -13.18806 -13.03582 -13.02612 -12.63115 -12.60450 -12.48658 -12.35175 -12.10875 -12.02184 -11.87070 -11.64860 -11.53735 -11.34173 -11.08929 -10.58337 -10.26766 -10.14775 -9.61951 -8.71241 -7.87312 -5.33079 1.38928 1.42485 1.47650 1.49095 1.58157 2.04530 2.24540 2.51776 2.76841 3.28697 3.34661 3.63277 3.67833 3.85042 3.98244 3.99515 4.10141 4.24119 4.34056 4.36793 4.48060 4.54298 4.67613 4.72976 4.79050 4.80864 4.83969 4.88184 5.03184 5.08349 5.12827 5.19859 5.28216 5.32919 5.45002 5.56790 5.63616 5.68905 5.73950 5.78933 6.19556 6.38939 6.84394 7.06478 7.13916 7.50035 7.85049 8.37412 9.19701 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003137 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.203604 B = 8924.954720 C = 8942.886673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.140 0.860 4 C 0.111 3.889 5 N -0.629 5.629 6 C 0.709 3.291 7 O -0.620 6.620 8 N -0.728 5.728 9 C 0.181 3.819 10 C -0.130 4.130 11 C 0.184 3.816 12 N -0.610 5.610 13 C -0.262 4.262 14 H 0.073 0.927 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.264 1.264 21 C 0.142 3.858 22 C -0.122 4.122 23 C 0.100 3.900 24 C 0.514 3.486 25 O -0.590 6.590 26 N -0.700 5.700 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.406 0.594 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.044 0.956 36 H -0.008 1.008 37 H 0.052 0.948 38 H 0.249 0.751 39 H 0.015 0.985 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.134 0.866 44 H 0.116 0.884 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.147 14.346 9.038 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.158 0.842 4 C -0.011 4.011 5 N -0.369 5.369 6 C 0.411 3.589 7 O -0.500 6.500 8 N -0.384 5.384 9 C 0.076 3.924 10 C -0.170 4.170 11 C 0.057 3.943 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.091 0.909 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.215 1.215 19 H -0.224 1.224 20 H -0.188 1.188 21 C 0.016 3.984 22 C -0.162 4.162 23 C -0.025 4.025 24 C 0.301 3.699 25 O -0.471 6.471 26 N -0.351 5.351 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.243 0.757 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.010 0.990 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 17.738 14.389 8.636 24.419 hybrid contribution -1.209 -0.505 0.650 1.463 sum 16.529 13.884 9.286 23.499 Atomic orbital electron populations 1.22215 0.95613 1.01095 1.03235 1.21547 0.94107 0.98396 0.83645 0.84244 1.22139 1.03379 0.77318 0.98288 1.47293 1.49136 1.09922 1.30508 1.15904 0.79196 0.81968 0.81854 1.90921 1.54243 1.69370 1.35482 1.45333 1.51307 1.06877 1.34874 1.20536 0.87899 0.91674 0.92311 1.22312 0.96229 0.98681 0.99781 1.20450 0.96390 0.83467 0.93968 1.44356 1.06886 1.01807 1.80297 1.19583 0.89029 0.93634 1.36993 0.90917 1.25835 0.99841 1.00150 0.98936 1.70205 1.13290 1.34793 1.40002 0.85254 0.78562 0.79286 0.77366 1.21521 1.22356 1.18838 1.21041 0.83740 0.98697 0.94897 1.22152 1.00119 0.92541 1.01365 1.21902 1.01667 0.96306 0.82664 1.20461 0.75861 0.83155 0.90464 1.90807 1.52231 1.73003 1.31049 1.45463 1.64095 1.11592 1.13905 0.91077 0.90764 0.95587 0.87856 0.87482 0.75651 0.92015 0.92611 0.93694 0.99009 0.92918 0.94193 0.96743 0.91429 0.88832 0.90952 0.84858 0.86650 0.75654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.37 71.98 0.67 -1.77 16 2 C 0.13 1.27 3.87 45.15 0.17 1.44 16 3 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 4 C 0.11 1.45 5.89 86.23 0.51 1.95 16 5 N -0.63 -11.47 2.75 -841.27 -2.31 -13.79 16 6 C 0.71 19.27 8.30 179.05 1.49 20.76 16 7 O -0.62 -22.30 15.49 -4.00 -0.06 -22.36 16 8 N -0.73 -18.77 4.98 -457.69 -2.28 -21.05 16 9 C 0.18 6.03 2.41 45.02 0.11 6.14 16 10 C -0.13 -5.22 5.65 30.67 0.17 -5.05 16 11 C 0.18 9.28 5.31 86.36 0.46 9.74 16 12 N -0.61 -30.65 2.99 -699.09 -2.09 -32.74 16 13 C -0.26 -14.37 9.58 84.04 0.81 -13.57 16 14 H 0.07 3.82 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -2.95 4.90 84.86 0.42 -2.53 16 16 N -0.94 -56.66 11.22 21.65 0.24 -56.42 16 17 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.14 5.64 6.52 86.36 0.56 6.21 16 22 C -0.12 -3.69 5.55 30.67 0.17 -3.52 16 23 C 0.10 1.45 6.43 85.44 0.55 2.00 16 24 C 0.51 9.25 7.84 87.79 0.69 9.94 16 25 O -0.59 -15.40 17.80 -3.03 -0.05 -15.46 16 26 N -0.70 -8.84 5.00 -446.42 -2.23 -11.08 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.02 0.57 7.99 -2.39 -0.02 0.55 16 30 H 0.10 1.71 6.98 -2.38 -0.02 1.69 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.41 7.95 6.24 -92.70 -0.58 7.38 16 33 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.05 3.01 6.06 -2.38 -0.01 3.00 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 2.54 7.93 -2.38 -0.02 2.53 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 1.64 5.96 -2.39 -0.01 1.63 16 45 H 0.41 4.25 8.80 -92.70 -0.82 3.43 16 Total: -1.00 -77.49 356.06 -0.37 -77.85 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.38 Total: 16.12 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 6.78 Total: 31.73 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -8.68 Total: -135.07 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.12 Total: -37.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -77.49 -0.37 -77.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684056798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.599 kcal (2) G-P(sol) polarization free energy of solvation -77.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds