Wall clock time and date at job start Fri Apr 10 2020 18:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99773 * 2 1 4 4 H 1.48498 * 109.47084 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46603 * 120.00012 * 3 2 1 7 7 C 1.38806 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00114 * 197.35269 * 7 2 1 9 9 N 1.36940 * 120.00044 * 17.34779 * 7 2 1 10 10 C 1.46929 * 120.62855 * 207.67681 * 9 7 2 11 11 C 1.53186 * 108.77716 * 233.62913 * 10 9 7 12 12 C 1.53041 * 109.31429 * 305.37474 * 11 10 9 13 13 N 1.46504 * 109.46017 * 181.38714 * 12 11 10 14 14 C 1.34779 * 120.00086 * 154.99779 * 13 12 11 15 15 O 1.21587 * 119.99882 * 359.72186 * 14 13 12 16 16 N 1.34771 * 119.99754 * 179.72134 * 14 13 12 17 17 C 1.46500 * 119.99749 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47251 * 179.97438 * 17 16 14 19 19 H 1.08996 * 110.85679 * 54.29837 * 18 17 16 20 20 C 1.54487 * 110.96885 * 290.51066 * 18 17 16 21 21 N 1.46819 * 105.44326 * 216.49196 * 20 18 17 22 22 C 1.34416 * 111.31969 * 16.96197 * 21 20 18 23 23 O 1.21283 * 124.94626 * 179.58901 * 22 21 20 24 24 C 1.51290 * 110.11500 * 359.62575 * 22 21 20 25 25 C 1.53038 * 109.54138 * 61.36242 * 12 11 10 26 26 C 1.46927 * 120.62859 * 27.70496 * 9 7 2 27 27 H 0.97000 * 120.00504 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.57981 * 113.84721 * 10 9 7 29 29 H 1.08995 * 109.58688 * 353.42469 * 10 9 7 30 30 H 1.08997 * 109.50015 * 185.41809 * 11 10 9 31 31 H 1.09004 * 109.52182 * 65.33892 * 11 10 9 32 32 H 1.09005 * 109.45677 * 301.34833 * 12 11 10 33 33 H 0.96999 * 119.99323 * 334.71573 * 13 12 11 34 34 H 0.97000 * 120.00543 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.47338 * 299.99936 * 17 16 14 36 36 H 1.09004 * 109.47328 * 60.00065 * 17 16 14 37 37 H 1.09004 * 110.24183 * 335.46119 * 20 18 17 38 38 H 1.08999 * 110.24558 * 97.46436 * 20 18 17 39 39 H 0.97003 * 124.33604 * 197.00263 * 21 20 18 40 40 H 1.08995 * 110.48627 * 225.06917 * 24 22 21 41 41 H 1.09002 * 110.59817 * 102.48016 * 24 22 21 42 42 H 1.08991 * 109.49992 * 58.58650 * 25 12 11 43 43 H 1.09002 * 109.49729 * 178.68640 * 25 12 11 44 44 H 1.09000 * 109.57860 * 246.15604 * 26 9 7 45 45 H 1.09001 * 109.58449 * 6.58122 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3723 -2.3609 -0.3547 10 6 1.8196 -3.6548 0.1789 11 6 2.0752 -4.6091 -0.9917 12 6 0.8198 -4.6886 -1.8634 13 7 1.0494 -5.6261 -2.9656 14 6 0.0059 -6.2461 -3.5515 15 8 -1.1256 -6.0312 -3.1619 16 7 0.2168 -7.1042 -4.5691 17 6 -0.9174 -7.7785 -5.2056 18 6 -0.4070 -8.6899 -6.3234 19 1 0.3486 -9.3795 -5.9473 20 6 0.1411 -7.8606 -7.5060 21 7 -0.2330 -8.6072 -8.7136 22 6 -1.1974 -9.5065 -8.4531 23 8 -1.6944 -10.2494 -9.2729 24 6 -1.5736 -9.4564 -6.9886 25 6 0.5016 -3.3032 -2.4303 26 6 0.2280 -2.3340 -1.2759 27 1 -0.4851 0.8400 -0.0004 28 1 1.0471 -4.0696 0.8266 29 1 2.7400 -3.5175 0.7463 30 1 2.3146 -5.6005 -0.6073 31 1 2.9092 -4.2390 -1.5880 32 1 -0.0194 -5.0357 -1.2605 33 1 1.9522 -5.7974 -3.2763 34 1 1.1195 -7.2753 -4.8801 35 1 -1.4483 -8.3751 -4.4638 36 1 -1.5941 -7.0339 -5.6249 37 1 -0.3168 -6.8715 -7.5173 38 1 1.2254 -7.7744 -7.4358 39 1 0.1654 -8.4696 -9.5873 40 1 -1.6504 -10.4639 -6.5798 41 1 -2.5113 -8.9177 -6.8517 42 1 1.3502 -2.9448 -3.0128 43 1 -0.3790 -3.3652 -3.0697 44 1 -0.6741 -2.6412 -0.7468 45 1 0.0986 -1.3254 -1.6684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684057914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:22 Heat of formation + Delta-G solvation = -48.902687 kcal Electronic energy + Delta-G solvation = -25515.461707 eV Core-core repulsion = 21761.058337 eV Total energy + Delta-G solvation = -3754.403371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84450 -39.89892 -37.70706 -37.04402 -34.84942 -34.34090 -32.41170 -31.68834 -30.02270 -29.45825 -28.20398 -26.03157 -24.74377 -22.26164 -22.08526 -21.38680 -20.99250 -20.56558 -19.45506 -18.23998 -17.65362 -17.17503 -16.67683 -16.07278 -15.45613 -15.39135 -14.92334 -14.55673 -14.41249 -14.20274 -13.94162 -13.76172 -13.65087 -13.49968 -13.02295 -12.97682 -12.67986 -12.50360 -12.33392 -11.73610 -11.54276 -11.48570 -11.12116 -10.93827 -10.72246 -10.39390 -10.36265 -10.26143 -10.11676 -10.00060 -9.75720 -9.60775 -9.56986 -9.25297 -8.63707 -8.39776 -6.69208 -5.78544 -3.21284 2.16544 2.66978 2.90451 3.33848 3.37895 3.44044 3.44758 3.80637 3.85085 4.10615 4.31539 4.49131 4.52784 4.75266 4.93956 5.01518 5.19972 5.25575 5.29663 5.39500 5.45474 5.46493 5.61056 5.64693 5.83309 6.08499 6.23483 6.28942 6.32064 6.35398 6.44323 6.52415 6.57836 6.65300 6.75259 6.87731 6.94198 7.07044 7.39077 7.68711 7.79126 7.79243 8.09444 8.44855 8.72001 9.20843 9.84319 10.40831 11.29928 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.002233 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.247572 B =12534.070648 C =12817.187199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.138 4.138 12 C 0.168 3.832 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.587 6.587 16 N -0.754 5.754 17 C 0.150 3.850 18 C -0.114 4.114 19 H 0.100 0.900 20 C 0.102 3.898 21 N -0.733 5.733 22 C 0.520 3.480 23 O -0.536 6.536 24 C -0.149 4.149 25 C -0.146 4.146 26 C 0.173 3.827 27 H 0.255 0.745 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.390 0.610 34 H 0.393 0.607 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -17.606 -13.301 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.464 6.464 16 N -0.411 5.411 17 C 0.025 3.975 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.023 4.023 21 N -0.389 5.389 22 C 0.307 3.693 23 O -0.412 6.412 24 C -0.189 4.189 25 C -0.187 4.187 26 C 0.047 3.953 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.222 0.778 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.249 0.751 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.904 -17.641 -13.200 22.115 hybrid contribution 1.560 0.856 -0.722 1.920 sum 3.464 -16.785 -13.922 22.080 Atomic orbital electron populations 1.70024 1.05255 1.25678 1.53536 1.25053 0.95274 0.98444 1.00877 0.86374 0.78907 0.83415 0.78074 1.21083 1.21647 1.20889 1.19126 0.92659 0.84881 1.41798 0.91692 1.44109 1.35887 1.01356 1.50194 1.20841 0.97976 0.86753 0.92327 1.22341 0.96752 0.99672 0.99060 1.20918 0.98542 0.88239 0.85837 1.45534 1.07758 1.47500 1.38461 1.15988 0.85317 0.78898 0.79686 1.90950 1.21503 1.67769 1.66195 1.45089 1.09841 1.48575 1.37622 1.21123 0.88370 0.94600 0.93390 1.22425 0.98457 0.97641 0.94771 0.88203 1.22252 1.01082 0.95578 0.83371 1.46265 1.40816 1.39309 1.12474 1.20881 0.78608 0.79001 0.90845 1.90777 1.55944 1.41181 1.53305 1.22340 1.00031 1.03770 0.92782 1.22574 1.00382 0.95246 1.00478 1.20771 0.88636 0.98232 0.87695 0.93515 0.96160 0.92353 0.92678 0.91942 0.90052 0.77755 0.77333 0.90705 0.90982 0.90225 0.89947 0.75075 0.87427 0.86991 0.92837 0.92848 0.96119 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 2 C 0.00 0.06 4.91 -17.44 -0.09 -0.02 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 10 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 12 C 0.17 2.81 2.42 -67.89 -0.16 2.65 16 13 N -0.74 -9.43 5.08 -58.63 -0.30 -9.73 16 14 C 0.70 9.44 8.53 -86.92 -0.74 8.70 16 15 O -0.59 -10.79 16.00 5.29 0.08 -10.70 16 16 N -0.75 -6.13 5.45 -65.22 -0.36 -6.49 16 17 C 0.15 1.04 4.96 -4.04 -0.02 1.02 16 18 C -0.11 -0.48 3.18 -88.98 -0.28 -0.76 16 19 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 20 C 0.10 0.41 7.20 -3.09 -0.02 0.38 16 21 N -0.73 -4.23 6.24 -59.16 -0.37 -4.60 16 22 C 0.52 4.43 8.43 -10.86 -0.09 4.33 16 23 O -0.54 -7.02 18.03 5.55 0.10 -6.92 16 24 C -0.15 -0.81 6.42 -26.74 -0.17 -0.98 16 25 C -0.15 -2.84 5.65 -26.61 -0.15 -2.99 16 26 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 33 H 0.39 3.69 8.62 -40.82 -0.35 3.34 16 34 H 0.39 1.94 8.44 -40.82 -0.34 1.60 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 37 H 0.08 0.36 7.79 -51.93 -0.40 -0.04 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.41 1.93 8.96 -40.82 -0.37 1.57 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.56 7.90 -51.93 -0.41 0.15 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -35.61 363.43 -9.54 -45.15 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.19 Total: 1.93 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.07 Total: 10.06 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.92 Total: -61.38 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.61 -9.54 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684057914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.752 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds