Wall clock time and date at job start Fri Apr 10 2020 18:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99773 * 2 1 4 4 H 1.48498 * 109.47084 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46603 * 120.00012 * 3 2 1 7 7 C 1.38806 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00114 * 197.35269 * 7 2 1 9 9 N 1.36940 * 120.00044 * 17.34779 * 7 2 1 10 10 C 1.46929 * 120.62855 * 207.67681 * 9 7 2 11 11 C 1.53186 * 108.77716 * 233.62913 * 10 9 7 12 12 C 1.53041 * 109.31429 * 305.37474 * 11 10 9 13 13 N 1.46504 * 109.46017 * 181.38714 * 12 11 10 14 14 C 1.34779 * 120.00086 * 154.99779 * 13 12 11 15 15 O 1.21587 * 119.99882 * 359.72186 * 14 13 12 16 16 N 1.34771 * 119.99754 * 179.72134 * 14 13 12 17 17 C 1.46500 * 119.99749 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47251 * 179.97438 * 17 16 14 19 19 H 1.08996 * 110.85679 * 54.29837 * 18 17 16 20 20 C 1.54487 * 110.96885 * 290.51066 * 18 17 16 21 21 N 1.46819 * 105.44326 * 216.49196 * 20 18 17 22 22 C 1.34416 * 111.31969 * 16.96197 * 21 20 18 23 23 O 1.21283 * 124.94626 * 179.58901 * 22 21 20 24 24 C 1.51290 * 110.11500 * 359.62575 * 22 21 20 25 25 C 1.53038 * 109.54138 * 61.36242 * 12 11 10 26 26 C 1.46927 * 120.62859 * 27.70496 * 9 7 2 27 27 H 0.97000 * 120.00504 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.57981 * 113.84721 * 10 9 7 29 29 H 1.08995 * 109.58688 * 353.42469 * 10 9 7 30 30 H 1.08997 * 109.50015 * 185.41809 * 11 10 9 31 31 H 1.09004 * 109.52182 * 65.33892 * 11 10 9 32 32 H 1.09005 * 109.45677 * 301.34833 * 12 11 10 33 33 H 0.96999 * 119.99323 * 334.71573 * 13 12 11 34 34 H 0.97000 * 120.00543 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.47338 * 299.99936 * 17 16 14 36 36 H 1.09004 * 109.47328 * 60.00065 * 17 16 14 37 37 H 1.09004 * 110.24183 * 335.46119 * 20 18 17 38 38 H 1.08999 * 110.24558 * 97.46436 * 20 18 17 39 39 H 0.97003 * 124.33604 * 197.00263 * 21 20 18 40 40 H 1.08995 * 110.48627 * 225.06917 * 24 22 21 41 41 H 1.09002 * 110.59817 * 102.48016 * 24 22 21 42 42 H 1.08991 * 109.49992 * 58.58650 * 25 12 11 43 43 H 1.09002 * 109.49729 * 178.68640 * 25 12 11 44 44 H 1.09000 * 109.57860 * 246.15604 * 26 9 7 45 45 H 1.09001 * 109.58449 * 6.58122 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3723 -2.3609 -0.3547 10 6 1.8196 -3.6548 0.1789 11 6 2.0752 -4.6091 -0.9917 12 6 0.8198 -4.6886 -1.8634 13 7 1.0494 -5.6261 -2.9656 14 6 0.0059 -6.2461 -3.5515 15 8 -1.1256 -6.0312 -3.1619 16 7 0.2168 -7.1042 -4.5691 17 6 -0.9174 -7.7785 -5.2056 18 6 -0.4070 -8.6899 -6.3234 19 1 0.3486 -9.3795 -5.9473 20 6 0.1411 -7.8606 -7.5060 21 7 -0.2330 -8.6072 -8.7136 22 6 -1.1974 -9.5065 -8.4531 23 8 -1.6944 -10.2494 -9.2729 24 6 -1.5736 -9.4564 -6.9886 25 6 0.5016 -3.3032 -2.4303 26 6 0.2280 -2.3340 -1.2759 27 1 -0.4851 0.8400 -0.0004 28 1 1.0471 -4.0696 0.8266 29 1 2.7400 -3.5175 0.7463 30 1 2.3146 -5.6005 -0.6073 31 1 2.9092 -4.2390 -1.5880 32 1 -0.0194 -5.0357 -1.2605 33 1 1.9522 -5.7974 -3.2763 34 1 1.1195 -7.2753 -4.8801 35 1 -1.4483 -8.3751 -4.4638 36 1 -1.5941 -7.0339 -5.6249 37 1 -0.3168 -6.8715 -7.5173 38 1 1.2254 -7.7744 -7.4358 39 1 0.1654 -8.4696 -9.5873 40 1 -1.6504 -10.4639 -6.5798 41 1 -2.5113 -8.9177 -6.8517 42 1 1.3502 -2.9448 -3.0128 43 1 -0.3790 -3.3652 -3.0697 44 1 -0.6741 -2.6412 -0.7468 45 1 0.0986 -1.3254 -1.6684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684057914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:22 Heat of formation + Delta-G solvation = -77.926257 kcal Electronic energy + Delta-G solvation = -25516.720264 eV Core-core repulsion = 21761.058337 eV Total energy + Delta-G solvation = -3755.661927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47719 -40.93461 -39.10763 -37.88566 -36.01235 -35.54641 -33.90105 -32.61769 -31.64101 -31.01767 -28.80863 -27.09425 -26.14165 -23.86849 -23.64486 -21.95642 -21.73862 -21.43097 -21.00146 -19.29994 -18.66006 -18.26014 -17.74728 -17.11520 -16.71056 -16.33712 -16.00275 -15.81207 -15.43084 -15.31942 -15.19432 -15.04648 -14.71823 -14.49673 -14.32136 -14.09895 -13.97019 -13.47475 -13.22298 -13.10985 -12.97050 -12.61258 -12.53624 -12.17284 -12.08896 -12.03907 -11.98867 -11.82001 -11.49025 -11.39155 -11.19428 -10.97866 -10.54987 -10.23534 -10.11662 -9.65267 -8.69044 -7.84955 -5.30740 1.49258 1.51593 1.53240 1.58530 1.75970 2.27096 2.43825 2.53743 3.25008 3.31464 3.33614 3.54031 3.70807 3.79134 3.94229 4.08964 4.15740 4.31972 4.40256 4.52806 4.61059 4.64919 4.71890 4.75755 4.79885 4.85451 4.90505 4.96516 5.10341 5.14038 5.18047 5.19121 5.36827 5.49823 5.56488 5.66483 5.68396 5.73664 5.83274 5.99802 6.13951 6.40882 7.15842 7.21788 7.24628 7.72047 7.87525 8.39793 9.21815 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.002233 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.247572 B =12534.070648 C =12817.187199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.273 1.273 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.140 3.860 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.725 5.725 14 C 0.697 3.303 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.151 3.849 18 C -0.095 4.095 19 H 0.123 0.877 20 C 0.099 3.901 21 N -0.723 5.723 22 C 0.511 3.489 23 O -0.591 6.591 24 C -0.145 4.145 25 C -0.129 4.129 26 C 0.181 3.819 27 H 0.249 0.751 28 H 0.010 0.990 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.412 0.588 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.416 0.584 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.044 0.956 44 H -0.013 1.013 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -18.933 -14.004 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.199 1.199 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.014 3.986 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.380 5.380 14 C 0.397 3.603 15 O -0.521 6.521 16 N -0.386 5.386 17 C 0.026 3.974 18 C -0.114 4.114 19 H 0.141 0.859 20 C -0.024 4.024 21 N -0.377 5.377 22 C 0.299 3.701 23 O -0.472 6.472 24 C -0.186 4.186 25 C -0.169 4.169 26 C 0.054 3.946 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.255 0.745 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.005 0.995 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.008 -19.006 -13.937 24.095 hybrid contribution 0.615 1.237 -0.484 1.463 sum 5.623 -17.770 -14.421 23.566 Atomic orbital electron populations 1.70205 1.06895 1.25883 1.55518 1.25867 0.95983 1.01800 1.01457 0.85320 0.77472 0.79053 0.78473 1.20179 1.22532 1.19901 1.19536 0.93155 0.85879 1.40461 0.90813 1.44363 1.35655 1.02541 1.50771 1.21063 0.97799 0.85602 0.94150 1.22121 0.96288 1.00337 0.97189 1.20461 0.98236 0.87111 0.86645 1.45064 1.08898 1.46514 1.37495 1.16192 0.84408 0.79343 0.80348 1.90932 1.23724 1.69537 1.67941 1.44819 1.11432 1.46706 1.35649 1.21154 0.87915 0.94470 0.93843 1.22288 0.98260 0.97135 0.93703 0.85874 1.22432 1.02835 0.94958 0.82216 1.46327 1.39662 1.38299 1.13443 1.21372 0.78527 0.78618 0.91595 1.90745 1.57955 1.43582 1.54956 1.22340 1.00655 1.04685 0.90901 1.22304 1.00219 0.96072 0.98347 1.20486 0.87747 0.97471 0.88849 0.94231 0.97154 0.91427 0.89007 0.90529 0.92809 0.75161 0.74835 0.91416 0.92223 0.90446 0.87018 0.74529 0.86456 0.86769 0.92022 0.93768 0.99474 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 11.19 21.65 0.24 -56.20 16 2 C -0.06 -3.12 4.91 84.86 0.42 -2.71 16 3 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -30.11 2.99 -699.09 -2.09 -32.20 16 10 C 0.14 5.43 6.52 86.36 0.56 5.99 16 11 C -0.12 -3.42 5.55 30.67 0.17 -3.25 16 12 C 0.18 5.76 2.42 45.02 0.11 5.87 16 13 N -0.72 -16.28 5.08 -457.67 -2.33 -18.61 16 14 C 0.70 17.24 8.53 179.06 1.53 18.77 16 15 O -0.64 -23.29 16.00 -3.99 -0.06 -23.35 16 16 N -0.73 -9.42 5.45 -478.54 -2.61 -12.03 16 17 C 0.15 1.72 4.96 86.38 0.43 2.15 16 18 C -0.09 -0.49 3.18 -9.73 -0.03 -0.52 16 19 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 20 C 0.10 0.45 7.20 86.82 0.62 1.08 16 21 N -0.72 -6.89 6.24 -459.66 -2.87 -9.76 16 22 C 0.51 8.20 8.43 87.90 0.74 8.94 16 23 O -0.59 -15.70 18.03 -3.04 -0.05 -15.76 16 24 C -0.15 -1.33 6.42 30.59 0.20 -1.13 16 25 C -0.13 -4.99 5.65 30.67 0.17 -4.82 16 26 C 0.18 9.02 5.31 86.36 0.46 9.47 16 27 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 2.06 7.57 -2.38 -0.02 2.04 16 33 H 0.41 5.84 8.62 -92.71 -0.80 5.04 16 34 H 0.41 2.06 8.44 -92.71 -0.78 1.28 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.88 8.00 -2.38 -0.02 0.86 16 37 H 0.08 0.47 7.79 -2.39 -0.02 0.45 16 38 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.42 3.19 8.96 -92.71 -0.83 2.36 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 1.02 7.90 -2.39 -0.02 1.00 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 44 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.05 3.05 6.04 -2.39 -0.01 3.04 16 Total: -1.00 -82.21 363.43 -2.95 -85.15 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -1.39 Total: 9.66 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 6.18 Total: 26.67 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -9.65 Total: -128.80 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.12 Total: -39.11 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.21 -2.95 -85.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684057914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.225 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds