Wall clock time and date at job start Fri Apr 10 2020 18:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48505 * 109.47120 * 269.99922 * 3 2 1 5 5 H 1.48499 * 109.47118 * 29.99726 * 3 2 1 6 6 H 1.48498 * 109.47443 * 150.00052 * 3 2 1 7 7 C 1.38814 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00501 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99958 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47004 * 34.99538 * 10 9 7 12 12 C 1.53002 * 109.46932 * 154.99652 * 10 9 7 13 13 N 1.46506 * 109.47035 * 304.99709 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00137 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.32354 * 40.70404 * 16 14 13 18 18 C 1.54917 * 110.36813 * 278.46599 * 16 14 13 19 19 C 1.55148 * 101.58307 * 204.14863 * 18 16 14 20 20 C 1.54330 * 102.93974 * 35.50231 * 19 18 16 21 21 N 1.47178 * 107.29557 * 337.71337 * 20 19 18 22 22 C 1.34779 * 125.73478 * 179.03159 * 21 20 19 23 23 N 1.34775 * 120.00160 * 0.07090 * 22 21 20 24 24 O 1.21583 * 119.99841 * 180.02562 * 22 21 20 25 25 C 1.52999 * 109.47155 * 274.99351 * 10 9 7 26 26 C 1.53001 * 117.49597 * 128.74779 * 25 10 9 27 27 C 1.53001 * 117.49395 * 60.08798 * 25 10 9 28 28 H 0.96996 * 120.00088 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99820 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46930 * 184.99939 * 12 10 9 31 31 H 1.09000 * 109.47312 * 64.99883 * 12 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 33 33 H 1.08998 * 111.00275 * 322.23225 * 18 16 14 34 34 H 1.09004 * 110.99716 * 86.03706 * 18 16 14 35 35 H 1.08995 * 110.72176 * 153.86241 * 19 18 16 36 36 H 1.09002 * 110.72313 * 276.96408 * 19 18 16 37 37 H 1.09001 * 109.87915 * 97.22616 * 20 19 18 38 38 H 1.09006 * 109.88126 * 218.22746 * 20 19 18 39 39 H 0.97003 * 119.99739 * 359.97438 * 23 22 21 40 40 H 0.96998 * 120.00346 * 179.97438 * 23 22 21 41 41 H 1.08995 * 115.55198 * 274.41885 * 25 10 9 42 42 H 1.08998 * 117.49706 * 359.97438 * 26 25 10 43 43 H 1.08998 * 117.50025 * 145.02616 * 26 25 10 44 44 H 1.09002 * 117.49660 * 214.97547 * 27 25 10 45 45 H 1.09001 * 117.50481 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9689 -3.5505 0.5899 12 6 1.1809 -4.7521 0.6103 13 7 0.7345 -4.3354 1.9419 14 6 -0.0554 -5.1472 2.6725 15 8 -0.3960 -6.2228 2.2277 16 6 -0.5151 -4.7183 4.0420 17 1 -0.7829 -3.6617 4.0379 18 6 0.5912 -4.9901 5.0919 19 6 -0.2391 -5.1011 6.3978 20 6 -1.5394 -5.7837 5.9237 21 7 -1.6615 -5.5364 4.4780 22 6 -2.6544 -5.9836 3.6839 23 7 -3.6511 -6.7265 4.2048 24 8 -2.6515 -5.7163 2.4978 25 6 2.4219 -4.0357 -1.4365 26 6 3.8821 -4.3893 -1.7257 27 6 3.3027 -3.0622 -2.2222 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 1.7559 -5.6746 0.6920 31 1 0.3133 -4.9201 -0.0278 32 1 1.0066 -3.4750 2.2975 33 1 1.1110 -5.9241 4.8787 34 1 1.2932 -4.1578 5.1439 35 1 0.2766 -5.7209 7.1311 36 1 -0.4466 -4.1127 6.8080 37 1 -1.4861 -6.8556 6.1144 38 1 -2.3946 -5.3564 6.4472 39 1 -3.6536 -6.9395 5.1511 40 1 -4.3659 -7.0481 3.6334 41 1 1.6540 -4.5775 -1.9885 42 1 4.5836 -4.3515 -0.8923 43 1 4.0749 -5.1634 -2.4684 44 1 3.1145 -2.9640 -3.2914 45 1 3.6227 -2.1517 -1.7156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690182044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:33 Heat of formation + Delta-G solvation = -47.841001 kcal Electronic energy + Delta-G solvation = -26654.462266 eV Core-core repulsion = 22900.104934 eV Total energy + Delta-G solvation = -3754.357332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70220 -40.03822 -38.96241 -38.12956 -36.04177 -35.09787 -34.67957 -32.77033 -32.05605 -30.84067 -29.22678 -25.78888 -25.03453 -23.91750 -23.02981 -22.47928 -21.84510 -21.26298 -20.52038 -19.52661 -19.01326 -18.36658 -17.53813 -16.97182 -16.79128 -16.55628 -16.12108 -15.99128 -15.77913 -15.46267 -15.23641 -14.96183 -14.79245 -14.38480 -14.15017 -14.02935 -13.65862 -13.25994 -12.99459 -12.90154 -12.70411 -12.61508 -12.40516 -12.24995 -12.22417 -11.97025 -11.71753 -11.68462 -11.32451 -11.02444 -10.98187 -10.80474 -10.70911 -10.58118 -9.93098 -9.57691 -8.99253 -7.86020 -5.15037 1.50611 1.52186 1.57005 1.59660 1.86331 2.21094 2.43455 2.59830 3.07795 3.36534 3.50210 3.60919 3.66019 3.81032 3.87954 3.99461 4.14529 4.17735 4.22245 4.35043 4.39407 4.48856 4.57868 4.68411 4.74380 4.83843 4.88157 4.89640 4.91354 5.08408 5.15384 5.18293 5.23215 5.33331 5.40136 5.47287 5.60489 5.62957 5.93748 6.02430 6.32054 6.68138 7.01368 7.37654 7.39684 7.73611 8.10707 8.37093 9.37064 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.003938 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.130842 B = 7108.336198 C = 7976.351487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.073 4.073 3 Si 0.964 3.036 4 H -0.296 1.296 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.724 5.724 10 C 0.201 3.799 11 H 0.065 0.935 12 C 0.135 3.865 13 N -0.711 5.711 14 C 0.502 3.498 15 O -0.562 6.562 16 C 0.129 3.871 17 H 0.093 0.907 18 C -0.114 4.114 19 C -0.116 4.116 20 C 0.092 3.908 21 N -0.627 5.627 22 C 0.710 3.290 23 N -0.846 5.846 24 O -0.628 6.628 25 C -0.179 4.179 26 C -0.158 4.158 27 C -0.171 4.171 28 H 0.246 0.754 29 H 0.369 0.631 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.412 0.588 40 H 0.418 0.582 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -13.173 16.803 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.265 4.265 3 Si 0.794 3.206 4 H -0.224 1.224 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.092 3.908 11 H 0.082 0.918 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.288 3.712 15 O -0.440 6.440 16 C 0.021 3.979 17 H 0.111 0.889 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.029 4.029 21 N -0.366 5.366 22 C 0.410 3.590 23 N -0.416 5.416 24 O -0.508 6.508 25 C -0.200 4.200 26 C -0.196 4.196 27 C -0.209 4.209 28 H 0.055 0.945 29 H 0.201 0.799 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.245 0.755 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.242 0.758 40 H 0.250 0.750 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.717 -13.604 15.732 20.868 hybrid contribution -0.740 1.295 -0.543 1.587 sum 0.978 -12.309 15.189 19.575 Atomic orbital electron populations 1.69848 1.06684 1.25582 1.60068 1.25428 0.96002 1.00640 1.04392 0.85280 0.77975 0.80351 0.76992 1.22384 1.22905 1.18906 1.19503 0.91221 0.84433 1.39757 0.90102 1.42606 1.05175 1.00524 1.88012 1.20133 0.94021 0.84541 0.92135 0.91752 1.21337 0.97116 0.97469 0.83104 1.45823 1.51334 1.21764 1.17454 1.21041 0.77695 0.84535 0.87913 1.90653 1.55906 1.24629 1.72796 1.21822 0.88277 0.95789 0.92033 0.88903 1.22797 0.95453 1.04127 0.92876 1.22653 0.93281 1.03134 0.96255 1.22400 1.00719 1.01853 0.77937 1.47395 1.22994 1.56085 1.10161 1.15789 0.80214 0.79209 0.83813 1.42653 1.26648 1.57805 1.14461 1.91012 1.78956 1.64260 1.16565 1.22924 0.94036 1.04226 0.98862 1.23037 0.94833 0.98185 1.03501 1.22738 1.04561 0.94396 0.99184 0.94467 0.79924 0.90623 0.94997 0.75481 0.90653 0.86984 0.86734 0.88575 0.90061 0.89072 0.75750 0.74956 0.89671 0.88154 0.87650 0.89762 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 44.90 29.55 68.60 2.03 46.93 16 4 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.22 -11.21 8.63 84.03 0.73 -10.49 16 8 H 0.08 3.96 6.91 -2.91 -0.02 3.94 16 9 N -0.72 -34.82 4.54 -322.93 -1.47 -36.28 16 10 C 0.20 7.73 2.70 44.99 0.12 7.85 16 11 H 0.06 2.37 7.84 -2.39 -0.02 2.35 16 12 C 0.13 5.12 5.22 86.38 0.45 5.57 16 13 N -0.71 -26.03 5.39 -463.04 -2.49 -28.52 16 14 C 0.50 18.84 6.19 87.66 0.54 19.38 16 15 O -0.56 -25.60 13.90 19.78 0.27 -25.33 16 16 C 0.13 3.59 3.56 44.72 0.16 3.75 16 17 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 18 C -0.11 -1.94 6.49 31.99 0.21 -1.73 16 19 C -0.12 -1.13 6.95 31.78 0.22 -0.91 16 20 C 0.09 1.22 6.16 86.70 0.53 1.75 16 21 N -0.63 -16.33 3.14 -809.70 -2.55 -18.87 16 22 C 0.71 23.23 8.01 179.05 1.43 24.66 16 23 N -0.85 -17.39 8.84 -184.75 -1.63 -19.02 16 24 O -0.63 -29.04 14.62 18.84 0.28 -28.76 16 25 C -0.18 -6.43 5.36 -10.79 -0.06 -6.49 16 26 C -0.16 -4.52 10.18 30.62 0.31 -4.21 16 27 C -0.17 -6.07 9.78 30.62 0.30 -5.77 16 28 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 30 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.41 14.51 8.14 -92.71 -0.75 13.76 16 33 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.41 4.92 7.82 -92.71 -0.73 4.20 16 40 H 0.42 7.93 8.93 -92.71 -0.83 7.10 16 41 H 0.09 3.14 8.11 -2.39 -0.02 3.12 16 42 H 0.10 2.63 8.05 -2.39 -0.02 2.61 16 43 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.08 3.33 6.23 -2.39 -0.01 3.32 16 Total: -1.00 -82.75 366.69 -1.85 -84.59 By element: Atomic # 1 Polarization: 56.08 SS G_CDS: -1.99 Total: 54.10 kcal Atomic # 6 Polarization: 24.40 SS G_CDS: 5.42 Total: 29.82 kcal Atomic # 7 Polarization: -153.50 SS G_CDS: -7.86 Total: -161.35 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: 0.55 Total: -54.09 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -82.75 -1.85 -84.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690182044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.752 kcal (2) G-P(sol) polarization free energy of solvation -82.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds