Wall clock time and date at job start Fri Apr 10 2020 18:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.45566 * 2 1 4 4 C 1.53038 * 109.46154 * 240.04153 * 2 1 3 5 5 C 1.53196 * 109.31216 * 178.61449 * 4 2 1 6 6 N 1.46924 * 108.77483 * 54.63040 * 5 4 2 7 7 C 1.34777 * 120.62688 * 126.37296 * 6 5 4 8 8 O 1.21286 * 119.99989 * 185.89494 * 7 6 5 9 9 C 1.50702 * 120.00388 * 5.89656 * 7 6 5 10 10 H 1.09005 * 110.48562 * 321.24980 * 9 7 6 11 11 C 1.54107 * 110.54852 * 84.10198 * 9 7 6 12 12 N 1.47049 * 103.85825 * 118.60003 * 11 9 7 13 13 C 1.33950 * 109.18404 * 359.97438 * 12 11 9 14 14 O 1.21587 * 123.03981 * 179.97438 * 13 12 11 15 15 N 1.33942 * 113.91185 * 359.97438 * 13 12 11 16 16 C 1.46919 * 118.73982 * 306.39087 * 6 5 4 17 17 H 1.09000 * 109.59087 * 293.82054 * 16 6 5 18 18 C 1.53004 * 109.70131 * 173.46581 * 16 6 5 19 19 N 1.46497 * 109.47059 * 69.62020 * 18 16 6 20 20 C 1.36942 * 120.00444 * 174.76792 * 19 18 16 21 21 H 1.08000 * 119.99606 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00461 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47562 * 60.00522 * 24 22 20 26 26 H 1.48504 * 109.46739 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47237 * 300.00166 * 24 22 20 28 28 C 1.53037 * 109.46088 * 119.96842 * 2 1 3 29 29 H 1.08997 * 109.47099 * 300.02752 * 1 2 3 30 30 H 1.09000 * 109.46549 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46835 * 60.03338 * 1 2 3 32 32 H 1.08997 * 109.49681 * 298.56141 * 4 2 1 33 33 H 1.09001 * 109.49664 * 58.66053 * 4 2 1 34 34 H 1.09001 * 109.58491 * 294.84622 * 5 4 2 35 35 H 1.08993 * 109.58529 * 174.42345 * 5 4 2 36 36 H 1.09003 * 110.54601 * 237.19476 * 11 9 7 37 37 H 1.09000 * 110.54789 * 359.97438 * 11 9 7 38 38 H 0.97008 * 125.40833 * 180.02562 * 12 11 9 39 39 H 0.97008 * 125.40769 * 179.97438 * 15 13 12 40 40 H 1.09006 * 109.47154 * 189.61078 * 18 16 6 41 41 H 1.08997 * 109.47420 * 309.61593 * 18 16 6 42 42 H 0.97007 * 120.00346 * 354.76922 * 19 18 16 43 43 H 0.96997 * 120.00410 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.50056 * 301.34037 * 28 2 1 45 45 H 1.09003 * 109.49831 * 61.43460 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5715 -0.6884 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9616 -2.2576 -0.0001 8 8 5.2830 -2.7831 1.0446 9 6 5.5614 -2.7328 -1.2984 10 1 4.8107 -2.7313 -2.0887 11 6 6.7661 -1.8556 -1.6908 12 7 7.8957 -2.7969 -1.7106 13 6 7.4550 -4.0201 -1.3884 14 8 8.1825 -4.9925 -1.3293 15 7 6.1405 -4.0749 -1.1373 16 6 3.5714 -0.6885 1.2642 17 1 3.9143 0.3410 1.3674 18 6 4.0912 -1.5222 2.4371 19 7 5.5350 -1.3187 2.5790 20 6 6.2056 -1.8812 3.6322 21 1 5.6701 -2.4753 4.3580 22 6 7.5737 -1.6888 3.7664 23 7 8.2264 -0.9652 2.8816 24 14 8.4885 -2.4568 5.2026 25 1 8.3371 -3.9332 5.1534 26 1 9.9284 -2.1033 5.1182 27 1 7.9272 -1.9438 6.4782 28 6 2.0399 -0.7208 1.2500 29 1 -0.3633 0.5142 0.8897 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5133 -0.8903 32 1 1.6980 -1.7554 -1.2385 33 1 1.6573 -0.2204 -2.1398 34 1 3.9144 0.3412 -1.3672 35 1 3.9418 -1.2841 -2.0985 36 1 6.6153 -1.4179 -2.6776 37 1 6.9301 -1.0760 -0.9468 38 1 8.8143 -2.5681 -1.9226 39 1 5.6483 -4.8734 -0.8900 40 1 3.5889 -1.2127 3.3537 41 1 3.8895 -2.5770 2.2507 42 1 6.0161 -0.7854 1.9270 43 1 9.1824 -0.8304 2.9755 44 1 1.6573 -0.2208 2.1399 45 1 1.6979 -1.7557 1.2382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691838234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:08 Heat of formation + Delta-G solvation = -29.140966 kcal Electronic energy + Delta-G solvation = -27992.055760 eV Core-core repulsion = 24238.509322 eV Total energy + Delta-G solvation = -3753.546438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37527 -41.00287 -38.51551 -37.40770 -36.24696 -34.76326 -34.05341 -33.63907 -31.53733 -30.29364 -28.87909 -27.12821 -25.12399 -24.43667 -24.08970 -22.81731 -22.60429 -21.02264 -20.25449 -19.14543 -18.83748 -18.03067 -17.34769 -16.80373 -16.70206 -16.55400 -16.03667 -15.63450 -15.43600 -15.29344 -15.14252 -14.90624 -14.63777 -14.51955 -14.34585 -13.93629 -13.75263 -13.61586 -13.14824 -13.10585 -12.82135 -12.78479 -12.61843 -12.50325 -12.19076 -11.98430 -11.85267 -11.63562 -11.52527 -11.22316 -11.15320 -10.90699 -10.71597 -10.20063 -9.46324 -9.40826 -8.63289 -7.87286 -5.03863 1.38419 1.43420 1.47417 1.65264 1.85584 2.12804 2.25640 2.58392 3.10426 3.42849 3.47201 3.56449 3.80258 3.85306 3.96167 4.05971 4.17803 4.34409 4.39921 4.44737 4.51224 4.63672 4.65406 4.74721 4.84436 4.86214 4.90303 5.01791 5.04355 5.07790 5.20178 5.23373 5.30446 5.41127 5.47754 5.51885 5.65729 5.87988 5.94062 6.23507 6.34973 6.35367 6.69520 7.42115 7.52021 7.60487 8.23118 8.45633 9.36525 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.006484 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.270423 B = 4317.149194 C = 6432.220859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.605 5.605 7 C 0.461 3.539 8 O -0.499 6.499 9 C 0.111 3.889 10 H 0.160 0.840 11 C 0.108 3.892 12 N -0.730 5.730 13 C 0.696 3.304 14 O -0.646 6.646 15 N -0.712 5.712 16 C 0.151 3.849 17 H 0.064 0.936 18 C 0.161 3.839 19 N -0.701 5.701 20 C -0.210 4.210 21 H 0.056 0.944 22 C -0.078 4.078 23 N -0.965 5.965 24 Si 0.956 3.044 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.276 1.276 28 C -0.112 4.112 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.067 0.933 38 H 0.435 0.565 39 H 0.431 0.569 40 H 0.006 0.994 41 H 0.022 0.978 42 H 0.369 0.631 43 H 0.243 0.757 44 H 0.072 0.928 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 6.085 -17.650 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.342 5.342 7 C 0.245 3.755 8 O -0.370 6.370 9 C 0.001 3.999 10 H 0.177 0.823 11 C -0.016 4.016 12 N -0.391 5.391 13 C 0.394 3.606 14 O -0.529 6.529 15 N -0.372 5.372 16 C 0.047 3.953 17 H 0.081 0.919 18 C 0.035 3.965 19 N -0.341 5.341 20 C -0.343 4.343 21 H 0.074 0.926 22 C -0.269 4.269 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.202 1.202 28 C -0.151 4.151 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.165 0.835 37 H 0.085 0.915 38 H 0.277 0.723 39 H 0.272 0.728 40 H 0.024 0.976 41 H 0.039 0.961 42 H 0.200 0.800 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.822 5.237 -16.877 24.397 hybrid contribution 1.327 -0.660 1.354 2.008 sum -15.494 4.577 -15.523 22.405 Atomic orbital electron populations 1.21777 0.94065 1.01814 1.02244 1.21105 0.96318 0.99508 0.93755 0.90582 1.21981 0.94220 1.01410 0.98533 1.22148 0.95067 1.00557 0.84578 1.47984 1.43430 1.35352 1.07431 1.21254 0.80578 0.82337 0.91337 1.91150 1.58785 1.54862 1.32236 1.22233 0.98135 0.82929 0.96559 0.82256 1.22493 0.82527 0.91687 1.04932 1.44980 1.12381 1.07415 1.74332 1.16177 0.83033 0.84060 0.77295 1.90904 1.59590 1.39393 1.62982 1.44782 1.07475 1.10919 1.73976 1.21277 0.94738 0.96176 0.83095 0.91854 1.20939 0.84303 0.97148 0.94107 1.42202 1.03457 1.59847 1.28633 1.19354 0.91059 1.22542 1.01393 0.92630 1.25218 0.97247 1.02983 1.01498 1.69743 1.07262 1.46405 1.38361 0.85447 0.77688 0.77689 0.80433 1.22333 1.22107 1.20192 1.21902 0.92140 1.01304 0.99750 0.93004 0.93015 0.91139 0.91844 0.87865 0.89934 0.87124 0.83527 0.91495 0.72269 0.72755 0.97621 0.96061 0.79957 0.94804 0.90957 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.23 2.68 -10.77 -0.03 -1.26 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.12 -1.26 5.36 30.67 0.16 -1.10 16 5 C 0.10 1.22 6.32 86.36 0.55 1.76 16 6 N -0.60 -14.89 2.97 -795.03 -2.36 -17.25 16 7 C 0.46 14.67 6.19 87.66 0.54 15.21 16 8 O -0.50 -22.99 10.45 -3.05 -0.03 -23.02 16 9 C 0.11 2.56 3.31 44.52 0.15 2.71 16 10 H 0.16 1.89 6.27 -2.38 -0.01 1.87 16 11 C 0.11 2.37 7.70 86.65 0.67 3.04 16 12 N -0.73 -21.57 6.37 -477.34 -3.04 -24.61 16 13 C 0.70 26.10 8.92 179.57 1.60 27.70 16 14 O -0.65 -30.42 18.05 -3.99 -0.07 -30.49 16 15 N -0.71 -21.98 5.62 -460.35 -2.59 -24.56 16 16 C 0.15 4.46 2.92 44.98 0.13 4.59 16 17 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.16 6.87 4.87 86.38 0.42 7.29 16 19 N -0.70 -37.41 3.25 -343.44 -1.11 -38.53 16 20 C -0.21 -12.84 9.74 84.03 0.82 -12.02 16 21 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 22 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 23 N -0.96 -62.14 13.06 21.65 0.28 -61.86 16 24 Si 0.96 51.17 29.55 68.60 2.03 53.20 16 25 H -0.30 -15.98 7.11 99.48 0.71 -15.28 16 26 H -0.29 -15.70 7.11 99.48 0.71 -15.00 16 27 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 28 C -0.11 -2.41 4.64 30.67 0.14 -2.26 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.71 5.46 -2.39 -0.01 0.69 16 36 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.87 7.72 -2.39 -0.02 1.86 16 38 H 0.44 11.65 8.96 -92.70 -0.83 10.82 16 39 H 0.43 12.82 8.96 -92.70 -0.83 11.99 16 40 H 0.01 0.26 8.13 -2.38 -0.02 0.24 16 41 H 0.02 1.01 6.29 -2.39 -0.02 1.00 16 42 H 0.37 20.65 7.08 -92.70 -0.66 20.00 16 43 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -90.82 352.57 -1.91 -92.73 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -1.29 Total: 34.10 kcal Atomic # 6 Polarization: 34.02 SS G_CDS: 6.28 Total: 40.31 kcal Atomic # 7 Polarization: -157.99 SS G_CDS: -8.83 Total: -166.82 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -0.10 Total: -53.51 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -90.82 -1.91 -92.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691838234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.589 kcal (2) G-P(sol) polarization free energy of solvation -90.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds