Wall clock time and date at job start Fri Apr 10 2020 18:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00483 * 2 1 4 4 H 1.07998 * 120.00551 * 202.47882 * 3 2 1 5 5 C 1.38816 * 119.99529 * 22.47773 * 3 2 1 6 6 N 1.31618 * 120.00101 * 12.33897 * 5 3 2 7 7 Si 1.86795 * 119.99880 * 192.34371 * 5 3 2 8 8 H 1.48503 * 109.47442 * 59.99708 * 7 5 3 9 9 H 1.48503 * 109.47473 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47080 * 299.99876 * 7 5 3 11 11 C 1.46505 * 120.00100 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46722 * 269.99938 * 11 2 1 13 13 O 1.42901 * 109.47293 * 64.99978 * 12 11 2 14 14 C 1.42904 * 113.99723 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46595 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46799 * 65.00175 * 15 14 13 17 17 C 1.46498 * 120.00077 * 269.99334 * 16 15 14 18 18 C 1.34777 * 119.99986 * 89.99709 * 16 15 14 19 19 O 1.21574 * 120.00091 * 354.44234 * 18 16 15 20 20 C 1.47709 * 120.00052 * 174.16386 * 18 16 15 21 21 C 1.41502 * 126.51791 * 174.36750 * 20 18 16 22 22 C 1.35373 * 105.50249 * 179.84285 * 21 20 18 23 23 N 1.35030 * 107.22430 * 0.41157 * 22 21 20 24 24 C 1.46504 * 124.88286 * 179.70632 * 23 22 21 25 25 N 1.28465 * 110.23545 * 359.72741 * 23 22 21 26 26 H 1.08995 * 109.46775 * 274.74769 * 1 2 3 27 27 H 1.08999 * 109.46957 * 34.74892 * 1 2 3 28 28 H 1.09001 * 109.47249 * 154.74947 * 1 2 3 29 29 H 0.96999 * 120.00222 * 180.02562 * 6 5 3 30 30 H 1.08996 * 109.47256 * 150.00115 * 11 2 1 31 31 H 1.09004 * 109.47297 * 29.99442 * 11 2 1 32 32 H 1.08998 * 109.47130 * 304.99521 * 12 11 2 33 33 H 1.09001 * 109.46732 * 185.00086 * 12 11 2 34 34 H 1.08999 * 109.47318 * 60.00094 * 14 13 12 35 35 H 1.08995 * 109.47181 * 299.99866 * 14 13 12 36 36 H 1.08995 * 109.47401 * 305.00044 * 15 14 13 37 37 H 1.08995 * 109.46604 * 184.99969 * 15 14 13 38 38 H 1.08996 * 109.47400 * 265.65057 * 17 16 15 39 39 H 1.09005 * 109.46954 * 25.65746 * 17 16 15 40 40 H 1.09004 * 109.47160 * 145.65042 * 17 16 15 41 41 H 1.07996 * 127.25227 * 359.97438 * 21 20 18 42 42 H 1.08001 * 126.38441 * 180.14299 * 22 21 20 43 43 H 1.09004 * 109.47151 * 269.99962 * 24 23 22 44 44 H 1.09000 * 109.47015 * 29.99723 * 24 23 22 45 45 H 1.09002 * 109.47595 * 149.99970 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1682 1.2214 -0.3576 5 6 1.5348 2.3424 0.4596 6 7 0.3962 2.2662 1.1155 7 14 2.3232 4.0067 0.1473 8 1 2.4527 4.2264 -1.3157 9 1 1.4745 5.0746 0.7344 10 1 3.6689 4.0425 0.7743 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 8 1.2060 -1.9944 2.0806 14 6 1.3326 -2.4189 3.4393 15 6 -0.0566 -2.6921 4.0195 16 7 -0.6661 -3.8229 3.3153 17 6 -1.4804 -3.5887 2.1202 18 6 -0.4778 -5.0787 3.7669 19 8 0.2784 -5.2834 4.6966 20 6 -1.1947 -6.2057 3.1362 21 6 -1.0195 -7.5805 3.4215 22 6 -1.8847 -8.2318 2.6092 23 7 -2.5281 -7.2964 1.8782 24 6 -3.5496 -7.5798 0.8670 25 7 -2.1154 -6.1223 2.1967 26 1 -0.3633 0.0851 1.0241 27 1 -0.3633 0.8444 -0.5858 28 1 -0.3634 -0.9295 -0.4384 29 1 -0.0337 3.0743 1.4363 30 1 3.1499 -1.1382 -0.5143 31 1 1.6084 -2.0283 -0.5147 32 1 2.9643 -0.9139 1.9811 33 1 3.0733 -2.6070 1.4427 34 1 1.8212 -1.6368 4.0203 35 1 1.9298 -3.3296 3.4812 36 1 -0.6820 -1.8079 3.8969 37 1 0.0329 -2.9297 5.0795 38 1 -2.5308 -3.5218 2.4036 39 1 -1.1716 -2.6565 1.6471 40 1 -1.3447 -4.4135 1.4206 41 1 -0.3402 -8.0181 4.1381 42 1 -2.0298 -9.3005 2.5529 43 1 -3.0728 -7.7109 -0.1044 44 1 -4.0837 -8.4913 1.1356 45 1 -4.2525 -6.7481 0.8174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692111873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:26 Heat of formation + Delta-G solvation = 44.459513 kcal Electronic energy + Delta-G solvation = -26303.153828 eV Core-core repulsion = 22552.798946 eV Total energy + Delta-G solvation = -3750.354882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.78201 -39.45935 -37.35815 -35.53595 -34.84373 -33.65761 -31.51363 -30.98000 -29.88170 -28.03854 -27.48928 -26.14231 -25.66127 -23.65092 -22.87256 -21.71441 -21.54258 -20.23763 -19.21048 -17.48673 -16.85920 -16.58081 -16.47169 -16.10853 -15.59779 -15.24251 -15.00108 -14.49801 -14.15783 -13.82867 -13.73343 -13.40761 -13.23424 -13.04640 -12.94842 -12.77755 -12.64291 -12.28731 -12.14047 -11.83989 -11.38868 -11.27064 -10.87227 -10.80009 -10.72434 -10.64568 -10.43965 -10.01331 -9.96126 -9.86952 -9.72572 -9.39203 -9.22095 -8.81040 -8.44937 -8.40133 -6.61592 -5.60989 -3.06322 1.52315 1.99713 2.26358 3.18248 3.43614 3.46892 3.48907 3.49784 4.13383 4.39900 4.55495 4.58850 4.63554 4.71620 4.98693 5.07760 5.42919 5.46867 5.50858 5.52963 5.61344 5.65382 5.67693 5.81784 5.91415 5.96712 6.09187 6.13833 6.22270 6.29371 6.33092 6.38021 6.57030 6.64976 6.75302 6.86558 6.98700 7.51984 7.54106 7.75080 7.86948 7.97194 8.02467 8.29848 8.50933 9.35674 9.99633 10.50294 11.43083 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.002991 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.512864 B = 9359.683433 C = 9833.223052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.065 0.935 5 C 0.002 3.998 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.366 6.366 14 C 0.048 3.952 15 C 0.122 3.878 16 N -0.590 5.590 17 C 0.088 3.912 18 C 0.598 3.402 19 O -0.543 6.543 20 C -0.011 4.011 21 C -0.180 4.180 22 C -0.022 4.022 23 N -0.290 5.290 24 C 0.087 3.913 25 N -0.252 5.252 26 H 0.033 0.967 27 H 0.034 0.966 28 H -0.007 1.007 29 H 0.250 0.750 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.022 0.978 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.161 0.839 42 H 0.180 0.820 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -21.616 1.644 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.732 3.268 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.285 6.285 14 C -0.030 4.030 15 C 0.000 4.000 16 N -0.321 5.321 17 C -0.055 4.055 18 C 0.384 3.616 19 O -0.419 6.419 20 C -0.171 4.171 21 C -0.208 4.208 22 C -0.165 4.165 23 N -0.078 5.078 24 C -0.054 4.054 25 N -0.089 5.089 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.178 0.822 42 H 0.197 0.803 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.702 -20.791 1.334 22.578 hybrid contribution 1.063 0.297 0.500 1.212 sum -7.639 -20.495 1.834 21.949 Atomic orbital electron populations 1.20678 0.82257 0.94595 0.99369 1.43871 1.02111 1.00204 1.85676 1.19164 0.98024 0.85629 1.35713 0.91685 1.24999 0.97879 0.98267 0.98477 1.70079 1.18456 1.26822 1.39465 0.86387 0.78426 0.84164 0.77816 1.21221 1.21719 1.21118 1.20877 0.96282 0.88755 0.91499 1.23431 0.85402 0.96680 0.97978 1.87930 1.30109 1.87217 1.23252 1.22760 0.96740 0.98018 0.85485 1.21597 0.93791 0.88464 0.96159 1.47618 1.50270 1.05366 1.28864 1.21985 0.93602 1.03672 0.86260 1.17009 0.80750 0.81409 0.82427 1.90762 1.37491 1.84056 1.29628 1.21960 1.00450 0.94934 0.99775 1.21773 1.03345 0.91805 1.03921 1.22838 0.98933 0.96890 0.97828 1.45565 1.29753 1.03391 1.29132 1.22168 0.89592 1.03828 0.89777 1.73850 1.13792 1.06117 1.15121 0.94867 0.94706 0.98833 0.93926 0.92560 0.93957 0.93515 0.96038 0.92909 0.93951 0.89018 0.89004 0.93092 0.89533 0.90393 0.82160 0.80259 0.89663 0.88764 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.48 8.61 59.85 0.52 5.00 16 2 N -0.60 -15.46 2.89 -181.11 -0.52 -15.99 16 3 C -0.26 -7.17 9.67 -15.06 -0.15 -7.31 16 4 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 5 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 6 N -0.90 -26.71 10.64 55.49 0.59 -26.12 16 7 Si 0.90 22.21 29.57 -169.99 -5.03 17.19 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.15 3.31 6.11 -4.04 -0.02 3.29 16 12 C 0.04 0.91 6.28 37.16 0.23 1.14 16 13 O -0.37 -7.47 8.80 -35.23 -0.31 -7.78 16 14 C 0.05 0.85 6.28 37.16 0.23 1.08 16 15 C 0.12 1.94 5.75 -4.04 -0.02 1.91 16 16 N -0.59 -9.36 2.84 -182.74 -0.52 -9.87 16 17 C 0.09 1.28 9.12 59.85 0.55 1.83 16 18 C 0.60 9.86 7.66 -12.39 -0.09 9.76 16 19 O -0.54 -10.13 16.57 5.30 0.09 -10.04 16 20 C -0.01 -0.16 6.76 -82.77 -0.56 -0.72 16 21 C -0.18 -2.09 10.81 -39.36 -0.43 -2.51 16 22 C -0.02 -0.19 11.46 -17.17 -0.20 -0.39 16 23 N -0.29 -2.66 3.70 -68.12 -0.25 -2.92 16 24 C 0.09 0.37 11.31 59.85 0.68 1.05 16 25 N -0.25 -3.18 8.73 33.42 0.29 -2.89 16 26 H 0.03 0.92 7.38 -51.93 -0.38 0.53 16 27 H 0.03 0.95 7.26 -51.93 -0.38 0.57 16 28 H -0.01 -0.16 7.84 -51.93 -0.41 -0.56 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.06 1.14 8.03 -51.93 -0.42 0.73 16 31 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.09 1.37 7.50 -51.93 -0.39 0.98 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.42 7.20 -51.93 -0.37 1.05 16 40 H 0.08 1.13 5.88 -51.93 -0.31 0.83 16 41 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.13 8.13 -51.93 -0.42 -0.29 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -35.32 374.43 -6.63 -41.95 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -7.26 Total: -3.28 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 0.65 Total: 14.10 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.41 Total: -57.79 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.22 Total: -17.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.32 -6.63 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692111873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.409 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds