Wall clock time and date at job start Fri Apr 10 2020 18:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 120.00165 * 2 1 4 4 H 1.07999 * 120.00381 * 173.00854 * 3 2 1 5 5 C 1.38809 * 119.99937 * 353.00209 * 3 2 1 6 6 N 1.31622 * 119.99873 * 5.38988 * 5 3 2 7 7 Si 1.86802 * 120.00352 * 185.38663 * 5 3 2 8 8 H 1.48495 * 109.46990 * 60.00364 * 7 5 3 9 9 H 1.48495 * 109.47212 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46807 * 300.00487 * 7 5 3 11 11 C 1.46501 * 119.99695 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47138 * 275.90899 * 11 2 1 13 13 H 1.09003 * 109.70400 * 58.86285 * 12 11 2 14 14 C 1.53193 * 109.58711 * 298.50749 * 12 11 2 15 15 C 1.53043 * 109.31245 * 185.57643 * 14 12 11 16 16 C 1.53039 * 109.53733 * 61.36608 * 15 14 12 17 17 C 1.53197 * 109.31169 * 298.63272 * 16 15 14 18 18 N 1.46923 * 108.77282 * 54.63827 * 17 16 15 19 19 C 1.34777 * 120.62979 * 126.36970 * 18 17 16 20 20 O 1.21284 * 119.99919 * 185.03025 * 19 18 17 21 21 C 1.50700 * 120.00120 * 5.02391 * 19 18 17 22 22 H 1.08998 * 110.49078 * 317.30017 * 21 19 18 23 23 C 1.54106 * 110.54557 * 80.00353 * 21 19 18 24 24 N 1.47051 * 103.86450 * 118.59705 * 23 21 19 25 25 C 1.33955 * 109.17757 * 359.97438 * 24 23 21 26 26 O 1.21586 * 123.04115 * 180.02562 * 25 24 23 27 27 N 1.33940 * 113.91429 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47035 * 184.15376 * 1 2 3 29 29 H 1.08999 * 109.47019 * 304.15244 * 1 2 3 30 30 H 1.08994 * 109.46872 * 64.15577 * 1 2 3 31 31 H 0.97000 * 119.99948 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47070 * 155.91300 * 11 2 1 33 33 H 1.08991 * 109.47544 * 35.91474 * 11 2 1 34 34 H 1.09004 * 109.49845 * 305.52463 * 14 12 11 35 35 H 1.08994 * 109.49710 * 65.59531 * 14 12 11 36 36 H 1.09000 * 109.46325 * 181.38681 * 15 14 12 37 37 H 1.09004 * 109.45997 * 301.34336 * 15 14 12 38 38 H 1.08997 * 109.50122 * 58.59029 * 16 15 14 39 39 H 1.09005 * 109.49838 * 178.68419 * 16 15 14 40 40 H 1.09002 * 109.58153 * 174.42366 * 17 16 15 41 41 H 1.09000 * 109.58793 * 294.70671 * 17 16 15 42 42 H 1.09004 * 110.54751 * 237.19118 * 23 21 19 43 43 H 1.09003 * 110.54993 * 359.97438 * 23 21 19 44 44 H 0.96999 * 125.40885 * 180.02562 * 24 23 21 45 45 H 0.97003 * 125.40947 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2237 1.1894 0.1138 5 6 1.4634 2.3835 -0.1465 6 7 0.1476 2.3883 -0.1787 7 14 2.4072 3.9885 -0.2976 8 1 3.2902 3.9329 -1.4902 9 1 1.4496 5.1141 -0.4422 10 1 3.2321 4.1941 0.9200 11 6 2.1974 -1.2688 0.0006 12 6 2.3238 -1.7841 1.4356 13 1 1.3316 -1.9204 1.8658 14 6 3.1136 -0.7755 2.2757 15 6 3.3564 -1.3582 3.6699 16 6 4.1829 -2.6407 3.5518 17 6 3.4052 -3.6705 2.7261 18 7 3.0418 -3.0660 1.4373 19 6 3.3612 -3.6756 0.2785 20 8 3.1377 -3.1243 -0.7784 21 6 3.9964 -5.0421 0.2961 22 1 4.7619 -5.0971 1.0700 23 6 2.9286 -6.1320 0.5129 24 7 3.0098 -6.9520 -0.7051 25 6 3.9538 -6.4495 -1.5118 26 8 4.2304 -6.9353 -2.5915 27 7 4.5654 -5.3635 -1.0212 28 1 -0.3633 -1.0250 0.0744 29 1 -0.3633 0.5769 0.8504 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3320 3.2253 -0.2807 32 1 3.1916 -1.1146 -0.4189 33 1 1.6584 -1.9998 -0.6018 34 1 4.0704 -0.5717 1.7950 35 1 2.5452 0.1505 2.3619 36 1 3.8969 -0.6326 4.2778 37 1 2.3996 -1.5848 4.1405 38 1 5.1297 -2.4194 3.0591 39 1 4.3753 -3.0426 4.5467 40 1 4.0288 -4.5480 2.5553 41 1 2.5025 -3.9625 3.2627 42 1 3.1654 -6.7298 1.3931 43 1 1.9392 -5.6847 0.6082 44 1 2.4656 -7.7323 -0.8946 45 1 5.2712 -4.8675 -1.4648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692257515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:35 Heat of formation + Delta-G solvation = 3.720433 kcal Electronic energy + Delta-G solvation = -27510.582565 eV Core-core repulsion = 23758.461104 eV Total energy + Delta-G solvation = -3752.121461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55226 -39.93409 -37.34301 -36.33800 -35.47319 -33.20916 -32.85497 -32.08260 -30.14390 -29.21909 -26.47895 -25.87086 -24.63220 -23.92330 -22.39964 -21.92511 -20.76635 -20.46059 -19.17241 -17.99875 -17.26557 -16.64726 -16.46003 -15.90593 -15.69852 -15.20704 -14.70062 -14.46314 -14.44223 -14.21384 -14.03301 -13.69537 -13.29292 -13.20816 -13.17047 -12.94577 -12.63444 -12.37359 -12.28998 -11.57384 -11.23157 -11.09732 -10.78707 -10.71750 -10.61521 -10.46006 -10.42143 -10.33537 -10.08626 -9.88209 -9.77628 -9.65646 -9.40780 -8.73416 -8.43282 -8.32072 -6.79844 -5.56403 -2.98023 2.42525 2.64584 2.86043 3.15219 3.42225 3.48510 3.49254 3.76994 4.02424 4.26299 4.47038 4.56895 4.72223 4.86756 4.94355 5.00226 5.14113 5.28993 5.34861 5.44313 5.48978 5.52416 5.68520 5.83613 5.89972 5.94963 6.06552 6.11372 6.38252 6.43470 6.65941 6.80076 6.84700 6.88539 6.97025 6.98723 7.18625 7.25671 7.50974 7.72206 7.78754 8.01297 8.23659 8.46753 8.48663 9.36185 10.00704 10.44152 11.42927 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.004143 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.400231 B = 6756.244845 C = 7615.194703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.612 5.612 3 C -0.237 4.237 4 H 0.071 0.929 5 C -0.007 4.007 6 N -0.920 5.920 7 Si 0.904 3.096 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.286 1.286 11 C 0.167 3.833 12 C 0.122 3.878 13 H 0.064 0.936 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.600 5.600 19 C 0.495 3.505 20 O -0.502 6.502 21 C 0.099 3.901 22 H 0.113 0.887 23 C 0.106 3.894 24 N -0.740 5.740 25 C 0.707 3.293 26 O -0.587 6.587 27 N -0.713 5.713 28 H -0.013 1.013 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.431 0.569 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -17.456 11.179 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.336 5.336 3 C -0.366 4.366 4 H 0.089 0.911 5 C -0.202 4.202 6 N -0.568 5.568 7 Si 0.734 3.266 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.213 1.213 11 C 0.040 3.960 12 C 0.017 3.983 13 H 0.082 0.918 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.020 4.020 18 N -0.335 5.335 19 C 0.279 3.721 20 O -0.376 6.376 21 C -0.011 4.011 22 H 0.131 0.869 23 C -0.020 4.020 24 N -0.403 5.403 25 C 0.405 3.595 26 O -0.464 6.464 27 N -0.375 5.375 28 H 0.005 0.995 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.273 0.727 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 6.530 -17.220 10.005 20.959 hybrid contribution 0.500 1.003 0.126 1.128 sum 7.030 -16.217 10.131 20.373 Atomic orbital electron populations 1.20996 0.82051 0.92571 1.01736 1.44327 1.02357 1.00998 1.85870 1.19250 0.91180 0.83928 1.42288 0.91086 1.24859 0.95643 0.97751 1.01977 1.70204 1.04982 1.24755 1.56845 0.86336 0.78659 0.83607 0.77963 1.21272 1.21720 1.21299 1.21358 0.97360 0.87253 0.90074 1.22627 0.93235 0.80048 1.02380 0.91774 1.21877 1.00871 0.99715 0.93269 1.21575 0.99617 0.96296 0.98452 1.21911 0.99245 0.96462 0.99560 1.21805 0.99518 0.95870 0.84850 1.48427 1.57103 1.23171 1.04786 1.20607 0.80031 0.86902 0.84535 1.90879 1.51632 1.64267 1.30783 1.21974 0.96936 0.93977 0.88247 0.86942 1.22234 0.99383 0.91070 0.89321 1.45038 1.41450 1.33439 1.20392 1.15846 0.79588 0.80666 0.83356 1.90999 1.69306 1.65083 1.21040 1.44835 1.41679 1.30679 1.20311 0.99474 0.93917 0.94271 0.94062 0.92410 0.92439 0.92414 0.88644 0.92108 0.92166 0.91628 0.91177 0.90436 0.91121 0.88916 0.89420 0.72674 0.72300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 8.99 59.85 0.54 4.89 16 2 N -0.61 -15.49 2.65 -181.13 -0.48 -15.97 16 3 C -0.24 -6.46 8.30 -15.06 -0.13 -6.58 16 4 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 5 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 6 N -0.92 -26.85 9.45 55.49 0.52 -26.33 16 7 Si 0.90 22.15 29.56 -169.99 -5.02 17.12 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.59 3.50 -4.04 -0.01 3.57 16 12 C 0.12 2.03 3.19 -67.60 -0.22 1.81 16 13 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.94 4.72 -26.61 -0.13 -2.06 16 15 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 16 C -0.13 -1.16 6.08 -26.61 -0.16 -1.32 16 17 C 0.10 0.81 6.26 -3.71 -0.02 0.79 16 18 N -0.60 -7.44 2.97 -165.22 -0.49 -7.93 16 19 C 0.50 6.58 6.73 -10.99 -0.07 6.51 16 20 O -0.50 -9.20 11.96 5.55 0.07 -9.13 16 21 C 0.10 0.90 3.19 -68.20 -0.22 0.68 16 22 H 0.11 0.66 6.53 -51.93 -0.34 0.32 16 23 C 0.11 0.75 7.58 -3.16 -0.02 0.72 16 24 N -0.74 -6.99 6.37 -64.70 -0.41 -7.41 16 25 C 0.71 9.56 8.92 -88.40 -0.79 8.77 16 26 O -0.59 -10.47 18.05 5.29 0.10 -10.37 16 27 N -0.71 -8.28 5.60 -59.33 -0.33 -8.62 16 28 H -0.01 -0.31 7.90 -51.93 -0.41 -0.72 16 29 H 0.04 1.15 7.06 -51.93 -0.37 0.79 16 30 H 0.04 1.10 7.04 -51.93 -0.37 0.73 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 33 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.90 7.01 -51.93 -0.36 1.54 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.37 5.51 -51.93 -0.29 0.08 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.66 7.72 -51.93 -0.40 0.26 16 44 H 0.43 3.20 8.96 -40.82 -0.37 2.83 16 45 H 0.43 4.89 8.96 -40.82 -0.37 4.53 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -35.60 347.98 -9.17 -44.78 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.88 Total: 2.68 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -1.48 Total: 15.92 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.19 Total: -66.24 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.60 -9.17 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692257515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.499 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds