Wall clock time and date at job start Fri Apr 10 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 120.00165 * 2 1 4 4 H 1.07999 * 120.00381 * 173.00854 * 3 2 1 5 5 C 1.38809 * 119.99937 * 353.00209 * 3 2 1 6 6 N 1.31622 * 119.99873 * 5.38988 * 5 3 2 7 7 Si 1.86802 * 120.00352 * 185.38663 * 5 3 2 8 8 H 1.48495 * 109.46990 * 60.00364 * 7 5 3 9 9 H 1.48495 * 109.47212 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46807 * 300.00487 * 7 5 3 11 11 C 1.46501 * 119.99695 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47138 * 275.90899 * 11 2 1 13 13 H 1.09003 * 109.70400 * 58.86285 * 12 11 2 14 14 C 1.53193 * 109.58711 * 298.50749 * 12 11 2 15 15 C 1.53043 * 109.31245 * 185.57643 * 14 12 11 16 16 C 1.53039 * 109.53733 * 61.36608 * 15 14 12 17 17 C 1.53197 * 109.31169 * 298.63272 * 16 15 14 18 18 N 1.46923 * 108.77282 * 54.63827 * 17 16 15 19 19 C 1.34777 * 120.62979 * 126.36970 * 18 17 16 20 20 O 1.21284 * 119.99919 * 185.03025 * 19 18 17 21 21 C 1.50700 * 120.00120 * 5.02391 * 19 18 17 22 22 H 1.08998 * 110.49078 * 317.30017 * 21 19 18 23 23 C 1.54106 * 110.54557 * 80.00353 * 21 19 18 24 24 N 1.47051 * 103.86450 * 118.59705 * 23 21 19 25 25 C 1.33955 * 109.17757 * 359.97438 * 24 23 21 26 26 O 1.21586 * 123.04115 * 180.02562 * 25 24 23 27 27 N 1.33940 * 113.91429 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47035 * 184.15376 * 1 2 3 29 29 H 1.08999 * 109.47019 * 304.15244 * 1 2 3 30 30 H 1.08994 * 109.46872 * 64.15577 * 1 2 3 31 31 H 0.97000 * 119.99948 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47070 * 155.91300 * 11 2 1 33 33 H 1.08991 * 109.47544 * 35.91474 * 11 2 1 34 34 H 1.09004 * 109.49845 * 305.52463 * 14 12 11 35 35 H 1.08994 * 109.49710 * 65.59531 * 14 12 11 36 36 H 1.09000 * 109.46325 * 181.38681 * 15 14 12 37 37 H 1.09004 * 109.45997 * 301.34336 * 15 14 12 38 38 H 1.08997 * 109.50122 * 58.59029 * 16 15 14 39 39 H 1.09005 * 109.49838 * 178.68419 * 16 15 14 40 40 H 1.09002 * 109.58153 * 174.42366 * 17 16 15 41 41 H 1.09000 * 109.58793 * 294.70671 * 17 16 15 42 42 H 1.09004 * 110.54751 * 237.19118 * 23 21 19 43 43 H 1.09003 * 110.54993 * 359.97438 * 23 21 19 44 44 H 0.96999 * 125.40885 * 180.02562 * 24 23 21 45 45 H 0.97003 * 125.40947 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2237 1.1894 0.1138 5 6 1.4634 2.3835 -0.1465 6 7 0.1476 2.3883 -0.1787 7 14 2.4072 3.9885 -0.2976 8 1 3.2902 3.9329 -1.4902 9 1 1.4496 5.1141 -0.4422 10 1 3.2321 4.1941 0.9200 11 6 2.1974 -1.2688 0.0006 12 6 2.3238 -1.7841 1.4356 13 1 1.3316 -1.9204 1.8658 14 6 3.1136 -0.7755 2.2757 15 6 3.3564 -1.3582 3.6699 16 6 4.1829 -2.6407 3.5518 17 6 3.4052 -3.6705 2.7261 18 7 3.0418 -3.0660 1.4373 19 6 3.3612 -3.6756 0.2785 20 8 3.1377 -3.1243 -0.7784 21 6 3.9964 -5.0421 0.2961 22 1 4.7619 -5.0971 1.0700 23 6 2.9286 -6.1320 0.5129 24 7 3.0098 -6.9520 -0.7051 25 6 3.9538 -6.4495 -1.5118 26 8 4.2304 -6.9353 -2.5915 27 7 4.5654 -5.3635 -1.0212 28 1 -0.3633 -1.0250 0.0744 29 1 -0.3633 0.5769 0.8504 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3320 3.2253 -0.2807 32 1 3.1916 -1.1146 -0.4189 33 1 1.6584 -1.9998 -0.6018 34 1 4.0704 -0.5717 1.7950 35 1 2.5452 0.1505 2.3619 36 1 3.8969 -0.6326 4.2778 37 1 2.3996 -1.5848 4.1405 38 1 5.1297 -2.4194 3.0591 39 1 4.3753 -3.0426 4.5467 40 1 4.0288 -4.5480 2.5553 41 1 2.5025 -3.9625 3.2627 42 1 3.1654 -6.7298 1.3931 43 1 1.9392 -5.6847 0.6082 44 1 2.4656 -7.7323 -0.8946 45 1 5.2712 -4.8675 -1.4648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692257515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:34 Heat of formation + Delta-G solvation = -25.226415 kcal Electronic energy + Delta-G solvation = -27511.837794 eV Core-core repulsion = 23758.461104 eV Total energy + Delta-G solvation = -3753.376690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47380 -41.02755 -38.51018 -37.46613 -37.19988 -34.14555 -33.89640 -33.66054 -31.76431 -30.08513 -28.05700 -27.82995 -25.80649 -24.76631 -23.81564 -22.82018 -22.12923 -21.73164 -20.23360 -18.90852 -18.76419 -18.12419 -17.38094 -17.03154 -16.96854 -16.57490 -16.08547 -15.53999 -15.44088 -15.35835 -15.17055 -14.99099 -14.74513 -14.46205 -14.23744 -14.08757 -13.83248 -13.74581 -13.25596 -13.15637 -12.90301 -12.69288 -12.59255 -12.17667 -12.11276 -11.98416 -11.81498 -11.70826 -11.55032 -11.46425 -11.32595 -10.87913 -10.61170 -10.35873 -9.69963 -9.45745 -8.86593 -7.71963 -5.15173 1.43422 1.46729 1.48116 1.52869 1.69474 1.96153 2.16326 2.52602 3.04041 3.32295 3.34148 3.43975 3.80602 3.88171 3.97270 4.06740 4.13317 4.22672 4.35999 4.43321 4.52303 4.64764 4.69806 4.73515 4.77524 4.82072 4.92453 5.07320 5.12427 5.17445 5.24159 5.36012 5.42063 5.54020 5.57768 5.61266 5.77393 5.84109 5.91364 6.22011 6.29880 6.32990 6.53863 7.18198 7.22988 7.53225 7.94291 8.33431 9.26265 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.004143 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.400231 B = 6756.244845 C = 7615.194703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.628 5.628 3 C -0.237 4.237 4 H 0.070 0.930 5 C -0.063 4.063 6 N -0.948 5.948 7 Si 0.965 3.035 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.178 3.822 12 C 0.137 3.863 13 H 0.061 0.939 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.095 3.905 18 N -0.594 5.594 19 C 0.489 3.511 20 O -0.565 6.565 21 C 0.108 3.892 22 H 0.163 0.837 23 C 0.106 3.894 24 N -0.729 5.729 25 C 0.695 3.305 26 O -0.642 6.642 27 N -0.716 5.716 28 H 0.012 0.988 29 H 0.022 0.978 30 H 0.005 0.995 31 H 0.243 0.757 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.151 0.849 43 H 0.087 0.913 44 H 0.440 0.560 45 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -19.977 14.501 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.353 5.353 3 C -0.367 4.367 4 H 0.088 0.912 5 C -0.255 4.255 6 N -0.598 5.598 7 Si 0.794 3.206 8 H -0.213 1.213 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.053 3.947 12 C 0.031 3.969 13 H 0.079 0.921 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.166 4.166 17 C -0.026 4.026 18 N -0.328 5.328 19 C 0.275 3.725 20 O -0.442 6.442 21 C -0.002 4.002 22 H 0.180 0.820 23 C -0.018 4.018 24 N -0.392 5.392 25 C 0.394 3.606 26 O -0.524 6.524 27 N -0.376 5.376 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.284 0.716 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 7.996 -19.800 13.428 25.224 hybrid contribution 0.060 1.746 -0.899 1.964 sum 8.056 -18.054 12.529 23.406 Atomic orbital electron populations 1.20620 0.82400 0.93282 0.99083 1.44546 1.02423 1.01984 1.86343 1.19466 0.91279 0.84861 1.41102 0.91197 1.25594 0.96543 1.00784 1.02613 1.70402 1.06188 1.24909 1.58275 0.85352 0.77383 0.79716 0.78120 1.21263 1.22008 1.19945 1.21236 0.95100 0.85319 0.93083 1.21895 0.94053 0.82595 0.98345 0.92054 1.21700 0.98834 0.98107 0.96372 1.21542 1.00912 0.98176 0.94855 1.21920 0.98193 0.94705 1.01819 1.22285 1.01422 0.96714 0.82147 1.48384 1.56114 1.21380 1.06901 1.21479 0.79056 0.88302 0.83617 1.90862 1.54230 1.66141 1.33017 1.22251 0.98400 0.91374 0.88132 0.82027 1.22613 0.98700 0.90602 0.89932 1.45031 1.40040 1.33496 1.20624 1.16178 0.80281 0.81056 0.83118 1.90949 1.71100 1.66764 1.23554 1.44923 1.41264 1.30018 1.21411 0.96908 0.95913 0.97623 0.94743 0.94867 0.93951 0.94231 0.93149 0.91829 0.91427 0.92121 0.87351 0.85806 0.88789 0.83170 0.89524 0.71605 0.72611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.16 8.99 127.77 1.15 11.31 16 2 N -0.63 -33.20 2.65 -726.97 -1.93 -35.13 16 3 C -0.24 -13.43 8.30 84.03 0.70 -12.73 16 4 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 5 C -0.06 -3.63 5.46 84.86 0.46 -3.17 16 6 N -0.95 -57.54 9.45 21.65 0.20 -57.34 16 7 Si 0.97 46.74 29.56 68.60 2.03 48.77 16 8 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 9 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 C 0.18 7.95 3.50 86.38 0.30 8.26 16 12 C 0.14 4.51 3.19 44.97 0.14 4.66 16 13 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 14 C -0.11 -3.63 4.72 30.67 0.14 -3.49 16 15 C -0.12 -2.45 5.88 30.62 0.18 -2.27 16 16 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 17 C 0.10 0.94 6.26 86.36 0.54 1.48 16 18 N -0.59 -13.09 2.97 -795.01 -2.36 -15.45 16 19 C 0.49 12.02 6.73 87.66 0.59 12.61 16 20 O -0.56 -21.07 11.96 -3.04 -0.04 -21.10 16 21 C 0.11 1.52 3.19 44.51 0.14 1.66 16 22 H 0.16 0.76 6.53 -2.39 -0.02 0.74 16 23 C 0.11 0.95 7.58 86.65 0.66 1.61 16 24 N -0.73 -11.70 6.37 -477.33 -3.04 -14.74 16 25 C 0.70 18.01 8.92 179.57 1.60 19.61 16 26 O -0.64 -23.21 18.05 -3.99 -0.07 -23.29 16 27 N -0.72 -15.45 5.60 -460.35 -2.58 -18.03 16 28 H 0.01 0.58 7.90 -2.39 -0.02 0.57 16 29 H 0.02 1.27 7.06 -2.39 -0.02 1.26 16 30 H 0.01 0.31 7.04 -2.39 -0.02 0.30 16 31 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.03 1.62 6.95 -2.39 -0.02 1.61 16 33 H 0.04 2.02 6.31 -2.39 -0.02 2.00 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 2.08 7.01 -2.39 -0.02 2.07 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.12 0.15 5.51 -2.39 -0.01 0.14 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.15 -0.19 8.14 -2.38 -0.02 -0.21 16 43 H 0.09 0.90 7.72 -2.39 -0.02 0.88 16 44 H 0.44 5.41 8.96 -92.71 -0.83 4.58 16 45 H 0.43 9.54 8.96 -92.71 -0.83 8.71 16 Total: -1.00 -86.73 347.98 -1.63 -88.36 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -0.64 Total: 9.80 kcal Atomic # 6 Polarization: 31.36 SS G_CDS: 6.80 Total: 38.16 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -9.71 Total: -140.69 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.11 Total: -44.39 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -86.73 -1.63 -88.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692257515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.132 kcal (2) G-P(sol) polarization free energy of solvation -86.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds