Wall clock time and date at job start Fri Apr 10 2020 18:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 O 1.42903 * 109.47137 * 180.02562 * 9 7 6 11 11 C 1.42902 * 114.00103 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47065 * 179.97438 * 11 10 9 13 13 C 1.35317 * 126.12696 * 359.68814 * 12 11 10 14 14 C 1.39870 * 107.91731 * 179.90340 * 13 12 11 15 15 N 1.30837 * 108.20659 * 0.36817 * 14 13 12 16 16 N 1.34951 * 126.12688 * 179.97438 * 12 11 10 17 17 C 1.46504 * 126.03434 * 359.94402 * 16 12 11 18 18 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 3 2 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 3 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 3 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 31 31 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 32 32 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 35 35 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 36 36 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 37 37 H 1.08996 * 109.46718 * 299.99709 * 11 10 9 38 38 H 1.08999 * 109.46821 * 60.00017 * 11 10 9 39 39 H 1.07996 * 126.03916 * 0.03609 * 13 12 11 40 40 H 1.08006 * 125.89597 * 180.13832 * 14 13 12 41 41 H 1.08997 * 109.47232 * 89.99983 * 17 16 12 42 42 H 1.08999 * 109.46546 * 210.00067 * 17 16 12 43 43 H 1.09002 * 109.46935 * 329.99540 * 17 16 12 44 44 H 0.97004 * 119.99747 * 95.00774 * 18 3 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 8 7.3222 4.4767 -0.0819 11 6 7.9125 5.7739 0.0224 12 6 9.4086 5.6576 -0.1157 13 6 10.1059 4.5131 -0.3029 14 6 11.4627 4.8439 -0.3812 15 7 11.5766 6.1394 -0.2380 16 7 10.2934 6.6755 -0.0694 17 6 9.9692 8.0911 0.1231 18 7 1.6524 2.0974 1.2518 19 6 0.4156 2.6734 1.3688 20 1 -0.2743 2.6446 0.5384 21 6 0.0486 3.2945 2.5548 22 7 0.8874 3.3249 3.5687 23 14 -1.6388 4.0796 2.7147 24 1 -1.7858 4.6654 4.0714 25 1 -1.7857 5.1494 1.6951 26 1 -2.6865 3.0484 2.5046 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9954 0.8311 0.6659 33 1 3.8498 1.0377 -1.0961 34 1 3.4410 3.5483 0.1315 35 1 5.4672 5.0884 -0.7542 36 1 5.6136 4.8809 1.0075 37 1 7.5230 6.4148 -0.7685 38 1 7.6701 6.2063 0.9931 39 1 9.6884 3.5202 -0.3805 40 1 12.2763 4.1492 -0.5302 41 1 9.9726 8.3231 1.1881 42 1 10.7118 8.7062 -0.3851 43 1 8.9820 8.2973 -0.2906 44 1 2.2720 2.1231 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698603609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:44 Heat of formation + Delta-G solvation = -14.698772 kcal Electronic energy + Delta-G solvation = -25104.241701 eV Core-core repulsion = 21351.321523 eV Total energy + Delta-G solvation = -3752.920178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22436 -40.85153 -38.89047 -38.17256 -35.40676 -34.32711 -34.29909 -32.37379 -31.37256 -30.18367 -28.36054 -27.64491 -26.73547 -25.35132 -23.97989 -22.12289 -21.82134 -21.34886 -20.86704 -19.42930 -18.55777 -17.91422 -17.57929 -17.46685 -16.74056 -16.57458 -16.36167 -16.18749 -15.56397 -15.43497 -15.39267 -14.89763 -14.67139 -14.57998 -14.31588 -13.92016 -13.79604 -13.57033 -13.28187 -13.22520 -13.15865 -12.71552 -12.62637 -12.54665 -12.08422 -11.98509 -11.81079 -11.75276 -11.53213 -11.16181 -11.02222 -10.96479 -10.79750 -10.22156 -10.08888 -9.51359 -9.04949 -8.23810 -5.19642 0.78182 1.34981 1.56792 1.64528 1.72087 1.82088 1.87642 1.93308 2.77111 2.90393 3.50728 3.55203 3.69376 3.74523 3.79730 3.89019 4.12540 4.18330 4.20608 4.29163 4.31718 4.35515 4.41977 4.42843 4.50433 4.64834 4.67941 4.70574 4.77577 4.79504 5.03547 5.07096 5.15192 5.15574 5.40767 5.50026 5.65937 5.67598 5.75872 5.85658 6.05348 6.54537 6.61398 6.65572 7.17104 7.20568 8.07809 8.20488 9.26671 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002510 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.073191 B =11153.029655 C =12419.365071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.060 0.940 5 C 0.123 3.877 6 N -0.708 5.708 7 C 0.507 3.493 8 O -0.576 6.576 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.128 3.872 12 C 0.072 3.928 13 C -0.272 4.272 14 C 0.041 3.959 15 N -0.325 5.325 16 N -0.373 5.373 17 C 0.086 3.914 18 N -0.738 5.738 19 C -0.303 4.303 20 H 0.072 0.928 21 C -0.103 4.103 22 N -0.981 5.981 23 Si 1.117 2.883 24 H -0.302 1.302 25 H -0.276 1.276 26 H -0.285 1.285 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.413 0.587 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.207 0.793 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.359 0.641 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 7.983 -10.392 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.063 3.937 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.361 5.361 7 C 0.294 3.706 8 O -0.455 6.455 9 C -0.028 4.028 10 O -0.299 6.299 11 C 0.050 3.950 12 C -0.056 4.056 13 C -0.302 4.302 14 C -0.144 4.144 15 N -0.147 5.147 16 N -0.158 5.158 17 C -0.053 4.053 18 N -0.381 5.381 19 C -0.435 4.435 20 H 0.090 0.910 21 C -0.295 4.295 22 N -0.630 5.630 23 Si 0.944 3.056 24 H -0.229 1.229 25 H -0.202 1.202 26 H -0.212 1.212 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.250 0.750 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.224 0.776 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.191 0.809 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.225 9.150 -9.668 18.073 hybrid contribution 0.352 -1.432 -0.343 1.514 sum 12.577 7.719 -10.011 17.832 Atomic orbital electron populations 1.21684 0.95862 1.00543 1.01826 1.22001 0.96746 0.97452 1.00975 1.20632 0.90754 0.93093 0.89253 0.92196 1.21552 0.94228 0.82862 1.01473 1.45823 1.06849 1.10670 1.72777 1.20801 0.82212 0.91580 0.76049 1.90690 1.56788 1.47781 1.50244 1.22281 0.81845 0.93506 1.05205 1.87949 1.18952 1.28428 1.94553 1.20833 0.85342 0.85341 1.03477 1.20866 0.93481 0.89159 1.02069 1.21439 0.93317 0.99512 1.15895 1.24303 0.97971 0.93031 0.99094 1.77299 1.00474 1.11354 1.25563 1.48719 1.03004 1.07946 1.56121 1.22279 1.04147 0.74640 1.04262 1.42588 1.15851 1.67263 1.12391 1.20221 0.93214 1.29712 1.00308 0.91030 1.26797 1.07974 1.02113 0.92593 1.70994 1.08711 1.49975 1.33299 0.82726 0.71690 0.75881 0.75264 1.22918 1.20204 1.21203 0.93129 0.92919 0.93351 0.90633 0.93837 0.93324 0.90251 0.75023 0.86531 0.87873 0.88182 0.88951 0.84195 0.77618 0.89395 0.88442 0.86895 0.80931 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.18 71.98 0.66 -4.06 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.17 5.85 2.59 44.99 0.12 5.96 16 4 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.71 -21.00 5.39 -463.06 -2.49 -23.49 16 7 C 0.51 15.49 7.91 87.66 0.69 16.18 16 8 O -0.58 -22.64 16.50 15.99 0.26 -22.38 16 9 C 0.05 1.08 6.42 71.24 0.46 1.54 16 10 O -0.38 -9.48 9.17 -129.94 -1.19 -10.67 16 11 C 0.13 2.17 5.90 71.24 0.42 2.59 16 12 C 0.07 1.61 6.91 41.40 0.29 1.90 16 13 C -0.27 -7.02 10.14 21.99 0.22 -6.80 16 14 C 0.04 0.94 12.02 85.24 1.02 1.97 16 15 N -0.32 -8.04 12.58 -57.02 -0.72 -8.76 16 16 N -0.37 -7.64 4.01 -356.02 -1.43 -9.06 16 17 C 0.09 0.88 11.27 127.77 1.44 2.32 16 18 N -0.74 -31.81 4.50 -322.94 -1.45 -33.27 16 19 C -0.30 -14.73 7.75 84.03 0.65 -14.08 16 20 H 0.07 3.40 7.32 -2.91 -0.02 3.37 16 21 C -0.10 -5.46 5.50 84.86 0.47 -4.99 16 22 N -0.98 -57.15 13.70 21.65 0.30 -56.85 16 23 Si 1.12 48.39 29.92 68.60 2.05 50.44 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.97 5.99 -2.38 -0.01 1.95 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.41 11.85 8.14 -92.71 -0.75 11.09 16 35 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.14 3.96 7.85 -2.91 -0.02 3.94 16 40 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 0.51 7.79 -2.39 -0.02 0.49 16 44 H 0.36 16.87 6.63 -92.71 -0.61 16.26 16 45 H 0.24 14.18 6.77 -92.71 -0.63 13.55 16 Total: -1.00 -74.03 377.86 2.16 -71.87 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.23 Total: 39.32 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.06 Total: 2.84 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.80 Total: -131.43 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.93 Total: -33.05 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.05 Total: 50.44 kcal Total: -74.03 2.16 -71.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698603609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.176 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds