Wall clock time and date at job start Fri Apr 10 2020 18:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47046 * 270.00164 * 3 2 1 5 5 H 1.48505 * 109.46674 * 30.00055 * 3 2 1 6 6 H 1.48496 * 109.46943 * 150.00131 * 3 2 1 7 7 C 1.38811 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00136 * 197.36618 * 7 2 1 9 9 N 1.36939 * 119.99874 * 17.36952 * 7 2 1 10 10 C 1.46929 * 120.63238 * 207.68538 * 9 7 2 11 11 C 1.53194 * 108.77701 * 233.58713 * 10 9 7 12 12 C 1.53036 * 109.31053 * 305.36290 * 11 10 9 13 13 C 1.53004 * 109.46051 * 181.38441 * 12 11 10 14 14 C 1.52999 * 109.47266 * 174.97278 * 13 12 11 15 15 N 1.46494 * 109.47211 * 180.02562 * 14 13 12 16 16 C 1.34780 * 120.00184 * 180.27740 * 15 14 13 17 17 O 1.21277 * 119.99474 * 359.71863 * 16 15 14 18 18 C 1.50701 * 119.99934 * 179.72258 * 16 15 14 19 19 H 1.08998 * 110.48983 * 321.24031 * 18 16 15 20 20 C 1.54100 * 110.54891 * 84.10267 * 18 16 15 21 21 N 1.47053 * 103.86275 * 118.59108 * 20 18 16 22 22 C 1.33944 * 109.17846 * 0.02562 * 21 20 18 23 23 O 1.21588 * 123.04312 * 179.97438 * 22 21 20 24 24 N 1.33953 * 113.91924 * 359.97438 * 22 21 20 25 25 C 1.53043 * 109.53008 * 61.37258 * 12 11 10 26 26 C 1.46925 * 120.63288 * 27.66273 * 9 7 2 27 27 H 0.96996 * 119.99860 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.58747 * 113.79438 * 10 9 7 29 29 H 1.09004 * 109.58143 * 353.36870 * 10 9 7 30 30 H 1.08994 * 109.49662 * 185.41429 * 11 10 9 31 31 H 1.08998 * 109.49714 * 65.31114 * 11 10 9 32 32 H 1.09000 * 109.46238 * 301.35802 * 12 11 10 33 33 H 1.09001 * 109.46620 * 54.97190 * 13 12 11 34 34 H 1.09004 * 109.46996 * 294.97562 * 13 12 11 35 35 H 1.08994 * 109.46945 * 59.99883 * 14 13 12 36 36 H 1.09002 * 109.46909 * 300.00367 * 14 13 12 37 37 H 0.97005 * 120.00199 * 359.97438 * 15 14 13 38 38 H 1.09003 * 110.54827 * 237.18321 * 20 18 16 39 39 H 1.09000 * 110.55080 * 359.97438 * 20 18 16 40 40 H 0.96995 * 125.41296 * 179.97438 * 21 20 18 41 41 H 0.97000 * 125.40941 * 180.02562 * 24 22 21 42 42 H 1.08999 * 109.49529 * 58.57502 * 25 12 11 43 43 H 1.08998 * 109.50234 * 178.67335 * 25 12 11 44 44 H 1.08996 * 109.58808 * 246.20190 * 26 9 7 45 45 H 1.09005 * 109.58364 * 6.62554 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3551 10 6 1.8192 -3.6549 0.1785 11 6 2.0742 -4.6094 -0.9922 12 6 0.8185 -4.6887 -1.8634 13 6 1.0577 -5.6678 -3.0145 14 6 -0.2361 -5.8428 -3.8123 15 7 -0.0073 -6.7808 -4.9141 16 6 -1.0118 -7.0854 -5.7595 17 8 -2.1065 -6.5869 -5.6049 18 6 -0.7747 -8.0455 -6.8966 19 1 0.2119 -7.8856 -7.3315 20 6 -0.9281 -9.5016 -6.4161 21 7 -2.0434 -10.0224 -7.2207 22 6 -2.4838 -9.0578 -8.0390 23 8 -3.4034 -9.2180 -8.8181 24 7 -1.8195 -7.9005 -7.9212 25 6 0.5009 -3.3031 -2.4304 26 6 0.2278 -2.3338 -1.2759 27 1 -0.4850 0.8400 -0.0004 28 1 1.0469 -4.0693 0.8264 29 1 2.7401 -3.5179 0.7455 30 1 2.3134 -5.6009 -0.6078 31 1 2.9080 -4.2391 -1.5887 32 1 -0.0207 -5.0353 -1.2603 33 1 1.3700 -6.6317 -2.6126 34 1 1.8375 -5.2767 -3.6681 35 1 -0.5484 -4.8790 -4.2141 36 1 -1.0159 -6.2338 -3.1587 37 1 0.8684 -7.1793 -5.0379 38 1 -0.0175 -10.0674 -6.6129 39 1 -1.1754 -9.5302 -5.3549 40 1 -2.4026 -10.9219 -7.1678 41 1 -1.9993 -7.0949 -8.4308 42 1 1.3497 -2.9451 -3.0131 43 1 -0.3798 -3.3646 -3.0696 44 1 -0.6743 -2.6405 -0.7467 45 1 0.0985 -1.3251 -1.6685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698724152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:52 Heat of formation + Delta-G solvation = -72.724647 kcal Electronic energy + Delta-G solvation = -25485.756907 eV Core-core repulsion = 21730.320538 eV Total energy + Delta-G solvation = -3755.436368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33119 -40.40736 -39.45749 -37.41930 -36.66936 -35.10035 -34.00949 -33.12211 -31.46488 -30.94071 -29.45807 -26.89620 -25.15155 -24.18927 -23.56570 -22.83122 -22.11510 -21.56917 -20.58069 -19.09616 -18.70238 -18.53041 -17.43493 -17.02239 -16.76649 -16.64636 -16.36856 -15.75063 -15.54456 -15.29227 -15.20566 -15.04499 -14.86325 -14.77181 -14.39569 -14.00695 -13.87671 -13.82593 -13.21859 -13.03812 -12.89863 -12.68356 -12.56118 -12.31794 -12.15808 -11.87447 -11.75739 -11.61148 -11.51387 -11.35827 -11.00508 -10.95471 -10.55254 -10.52523 -10.08536 -9.82505 -8.67033 -7.86665 -5.31993 1.39652 1.45771 1.47118 1.56092 1.72347 1.96963 2.22976 2.51231 3.07456 3.27235 3.33545 3.60729 3.74725 3.88438 4.00150 4.01867 4.18329 4.34875 4.37829 4.47086 4.60413 4.67708 4.72933 4.74035 4.78098 4.82940 4.92595 5.07677 5.09501 5.15403 5.34805 5.39131 5.43448 5.46601 5.50020 5.58755 5.68809 5.82325 5.89428 6.19835 6.29021 6.39825 6.56810 7.15671 7.22536 7.50829 7.89153 8.39864 9.19165 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.002222 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.074636 B =12600.239437 C =13121.071244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.112 4.112 12 C -0.073 4.073 13 C -0.105 4.105 14 C 0.120 3.880 15 N -0.701 5.701 16 C 0.495 3.505 17 O -0.581 6.581 18 C 0.108 3.892 19 H 0.166 0.834 20 C 0.105 3.895 21 N -0.730 5.730 22 C 0.693 3.307 23 O -0.641 6.641 24 N -0.717 5.717 25 C -0.123 4.123 26 C 0.174 3.826 27 H 0.248 0.752 28 H 0.008 0.992 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.424 0.576 38 H 0.146 0.854 39 H 0.092 0.908 40 H 0.440 0.560 41 H 0.433 0.567 42 H 0.052 0.948 43 H 0.058 0.942 44 H -0.012 1.012 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 -23.010 -12.586 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.009 3.991 11 C -0.151 4.151 12 C -0.092 4.092 13 C -0.143 4.143 14 C -0.005 4.005 15 N -0.354 5.354 16 C 0.280 3.720 17 O -0.460 6.460 18 C -0.002 4.002 19 H 0.183 0.817 20 C -0.019 4.019 21 N -0.393 5.393 22 C 0.391 3.609 23 O -0.523 6.523 24 N -0.378 5.378 25 C -0.162 4.162 26 C 0.048 3.952 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.262 0.738 38 H 0.164 0.836 39 H 0.110 0.890 40 H 0.283 0.717 41 H 0.275 0.725 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.006 0.994 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.059 -22.615 -12.795 26.681 hybrid contribution -0.260 1.547 0.259 1.590 sum 5.799 -21.068 -12.536 25.192 Atomic orbital electron populations 1.70207 1.06808 1.25716 1.55786 1.25833 0.96021 1.01675 1.01636 0.85268 0.78162 0.79515 0.77553 1.21226 1.22435 1.19027 1.19557 0.92992 0.86193 1.40169 0.91397 1.44372 1.35852 1.02403 1.51001 1.21141 0.96914 0.86129 0.94875 1.21888 0.97161 0.99292 0.96741 1.20916 0.97998 0.93939 0.96340 1.21698 0.95983 1.00420 0.96189 1.21339 0.98637 0.92411 0.88063 1.45812 1.14421 1.46083 1.29131 1.21412 0.84169 0.82521 0.83939 1.90785 1.26491 1.54760 1.73978 1.22223 0.95817 0.94948 0.87194 0.81678 1.22617 0.92559 0.89879 0.96865 1.45055 1.38185 1.14819 1.41253 1.16226 0.81242 0.82305 0.81105 1.90959 1.33442 1.83593 1.44355 1.44916 1.37203 1.13899 1.41783 1.22082 1.00327 0.96233 0.97591 1.20590 0.87544 0.97730 0.89352 0.94285 0.97394 0.92977 0.89356 0.92240 0.92522 0.88392 0.90055 0.93292 0.92768 0.73770 0.83583 0.89021 0.71656 0.72496 0.92889 0.92382 0.99441 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 11.19 21.65 0.24 -56.63 16 2 C -0.06 -3.21 4.91 84.86 0.42 -2.80 16 3 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.26 -14.26 9.59 84.03 0.81 -13.45 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -30.62 2.99 -699.08 -2.09 -32.71 16 10 C 0.13 5.32 6.52 86.36 0.56 5.88 16 11 C -0.11 -3.14 5.36 30.67 0.16 -2.98 16 12 C -0.07 -1.95 2.15 -10.77 -0.02 -1.98 16 13 C -0.11 -1.69 4.80 30.60 0.15 -1.55 16 14 C 0.12 2.22 5.43 86.38 0.47 2.69 16 15 N -0.70 -7.70 5.56 -463.08 -2.57 -10.28 16 16 C 0.49 7.89 6.93 87.66 0.61 8.49 16 17 O -0.58 -16.84 16.60 -3.02 -0.05 -16.89 16 18 C 0.11 0.85 4.17 44.51 0.19 1.03 16 19 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 20 C 0.11 0.41 7.70 86.65 0.67 1.07 16 21 N -0.73 -8.61 6.37 -477.34 -3.04 -11.66 16 22 C 0.69 14.95 8.92 179.57 1.60 16.55 16 23 O -0.64 -20.67 18.05 -3.99 -0.07 -20.74 16 24 N -0.72 -11.73 5.63 -460.35 -2.59 -14.32 16 25 C -0.12 -4.36 5.14 30.67 0.16 -4.20 16 26 C 0.17 8.45 5.31 86.36 0.46 8.91 16 27 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.19 6.53 -2.39 -0.02 1.18 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.42 0.80 8.47 -92.70 -0.79 0.01 16 38 H 0.15 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.09 0.36 7.72 -2.39 -0.02 0.34 16 40 H 0.44 3.75 8.96 -92.71 -0.83 2.92 16 41 H 0.43 7.16 8.96 -92.71 -0.83 6.33 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.93 6.50 -2.39 -0.02 1.92 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.05 2.61 6.04 -2.38 -0.01 2.59 16 Total: -1.00 -88.13 361.11 -3.35 -91.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -1.42 Total: 6.86 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.22 Total: 17.67 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -10.06 Total: -125.60 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.12 Total: -37.63 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -88.13 -3.35 -91.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698724152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.758 kcal (2) G-P(sol) polarization free energy of solvation -88.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds