Wall clock time and date at job start Fri Apr 10 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48500 * 109.46985 * 274.06195 * 3 2 1 5 5 H 1.48501 * 109.47149 * 34.06041 * 3 2 1 6 6 H 1.48500 * 109.47212 * 154.06187 * 3 2 1 7 7 C 1.38808 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00276 * 197.52582 * 7 2 1 9 9 N 1.36943 * 119.99836 * 17.52976 * 7 2 1 10 10 C 1.46917 * 120.63317 * 207.99410 * 9 7 2 11 11 C 1.53199 * 108.77900 * 233.63417 * 10 9 7 12 12 C 1.53044 * 109.30963 * 305.36257 * 11 10 9 13 13 C 1.52994 * 109.45770 * 181.38239 * 12 11 10 14 14 C 1.52997 * 109.47163 * 174.97453 * 13 12 11 15 15 N 1.46505 * 109.47320 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99760 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99891 * 179.97438 * 16 15 14 19 19 H 1.08997 * 110.60261 * 42.77858 * 18 16 15 20 20 C 1.54110 * 110.55082 * 280.00431 * 18 16 15 21 21 N 1.47053 * 103.86220 * 241.40337 * 20 18 16 22 22 C 1.33952 * 109.18067 * 0.02562 * 21 20 18 23 23 O 1.21584 * 123.03959 * 180.02562 * 22 21 20 24 24 N 1.33949 * 113.91287 * 359.97438 * 22 21 20 25 25 C 1.53046 * 109.52449 * 61.37365 * 12 11 10 26 26 C 1.46934 * 120.62939 * 28.02022 * 9 7 2 27 27 H 0.96999 * 120.00059 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58679 * 113.84545 * 10 9 7 29 29 H 1.09004 * 109.70400 * 353.48939 * 10 9 7 30 30 H 1.09001 * 109.49589 * 185.41363 * 11 10 9 31 31 H 1.08994 * 109.52327 * 65.33057 * 11 10 9 32 32 H 1.08995 * 109.46121 * 301.36334 * 12 11 10 33 33 H 1.09001 * 109.47113 * 54.97758 * 13 12 11 34 34 H 1.09003 * 109.47717 * 294.97549 * 13 12 11 35 35 H 1.09006 * 109.47322 * 60.00191 * 14 13 12 36 36 H 1.08999 * 109.47490 * 300.00194 * 14 13 12 37 37 H 0.96993 * 120.00014 * 359.97438 * 15 14 13 38 38 H 1.08997 * 110.54750 * 122.80432 * 20 18 16 39 39 H 1.09000 * 110.66775 * 0.06198 * 20 18 16 40 40 H 0.96995 * 125.40818 * 179.73130 * 21 20 18 41 41 H 0.96997 * 125.40443 * 180.02562 * 24 22 21 42 42 H 1.09006 * 109.49647 * 58.57671 * 25 12 11 43 43 H 1.08994 * 109.49185 * 178.67268 * 25 12 11 44 44 H 1.08990 * 109.58526 * 246.15275 * 26 9 7 45 45 H 1.09000 * 109.58526 * 6.44231 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0960 -1.3966 5 1 1.4932 2.6264 0.7841 6 1 3.5881 1.4169 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3733 -2.3607 -0.3562 10 6 1.8145 -3.6541 0.1830 11 6 2.0775 -4.6111 -0.9840 12 6 0.8284 -4.6905 -1.8647 13 6 1.0753 -5.6718 -3.0122 14 6 -0.2124 -5.8469 -3.8196 15 7 0.0239 -6.7871 -4.9181 16 6 -0.9761 -7.0967 -5.7669 17 8 -2.0715 -6.5966 -5.6218 18 6 -0.7329 -8.0633 -6.8972 19 1 -0.1451 -8.9146 -6.5540 20 6 -0.0272 -7.3568 -8.0710 21 7 -0.9799 -7.4856 -9.1838 22 6 -2.0641 -8.1485 -8.7604 23 8 -3.0126 -8.3960 -9.4797 24 7 -2.0083 -8.5149 -7.4732 25 6 0.5168 -3.3055 -2.4365 26 6 0.2358 -2.3339 -1.2859 27 1 -0.4850 0.8400 -0.0004 28 1 1.0367 -4.0666 0.8257 29 1 2.7304 -3.5193 0.7584 30 1 2.3126 -5.6022 -0.5959 31 1 2.9164 -4.2433 -1.5747 32 1 -0.0158 -5.0350 -1.2674 33 1 1.3834 -6.6354 -2.6062 34 1 1.8606 -5.2829 -3.6604 35 1 -0.5205 -4.8833 -4.2256 36 1 -0.9977 -6.2359 -3.1715 37 1 0.9000 -7.1867 -5.0344 38 1 0.9109 -7.8572 -8.3105 39 1 0.1492 -6.3067 -7.8379 40 1 -0.8463 -7.1412 -10.0806 41 1 -2.6994 -9.0010 -6.9968 42 1 1.3705 -2.9495 -3.0133 43 1 -0.3590 -3.3672 -3.0824 44 1 -0.6706 -2.6387 -0.7631 45 1 0.1092 -1.3253 -1.6794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698724156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:56 Heat of formation + Delta-G solvation = -72.853303 kcal Electronic energy + Delta-G solvation = -25526.898634 eV Core-core repulsion = 21771.456687 eV Total energy + Delta-G solvation = -3755.441947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33331 -40.40690 -39.45593 -37.42216 -36.67250 -35.10127 -34.00600 -33.12426 -31.46572 -30.94738 -29.44820 -26.89034 -25.15454 -24.19306 -23.57548 -22.83060 -22.11473 -21.56498 -20.58485 -19.09999 -18.70734 -18.50989 -17.42874 -17.04524 -16.74414 -16.71223 -16.32340 -15.78417 -15.47123 -15.33552 -15.23660 -15.00374 -14.91590 -14.75895 -14.34048 -14.06939 -13.86540 -13.81946 -13.20759 -13.03968 -12.90658 -12.68665 -12.56486 -12.31531 -12.15031 -11.87278 -11.75620 -11.60919 -11.51520 -11.35680 -11.00268 -10.95311 -10.56069 -10.52749 -10.08355 -9.82974 -8.66636 -7.86788 -5.32278 1.42149 1.45864 1.46984 1.56473 1.69499 1.96968 2.22758 2.51293 3.06927 3.27196 3.32599 3.60525 3.74671 3.88510 3.99781 4.02889 4.18316 4.33658 4.38509 4.47050 4.60375 4.67297 4.72489 4.74153 4.78180 4.82903 4.92525 5.07634 5.09608 5.15630 5.34804 5.39181 5.43452 5.46624 5.49756 5.58822 5.68810 5.82319 5.89688 6.19660 6.28427 6.39943 6.56882 7.15710 7.22598 7.50496 7.89066 8.40036 9.19144 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.002295 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.386748 B =12199.450959 C =12663.953415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.112 4.112 12 C -0.073 4.073 13 C -0.105 4.105 14 C 0.120 3.880 15 N -0.701 5.701 16 C 0.495 3.505 17 O -0.582 6.582 18 C 0.109 3.891 19 H 0.169 0.831 20 C 0.103 3.897 21 N -0.731 5.731 22 C 0.693 3.307 23 O -0.641 6.641 24 N -0.716 5.716 25 C -0.123 4.123 26 C 0.174 3.826 27 H 0.248 0.752 28 H 0.007 0.993 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.424 0.576 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.440 0.560 41 H 0.434 0.566 42 H 0.054 0.946 43 H 0.058 0.942 44 H -0.013 1.013 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -20.784 -14.264 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.009 3.991 11 C -0.151 4.151 12 C -0.092 4.092 13 C -0.143 4.143 14 C -0.004 4.004 15 N -0.355 5.355 16 C 0.280 3.720 17 O -0.460 6.460 18 C -0.001 4.001 19 H 0.186 0.814 20 C -0.022 4.022 21 N -0.394 5.394 22 C 0.391 3.609 23 O -0.523 6.523 24 N -0.377 5.377 25 C -0.162 4.162 26 C 0.048 3.952 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.262 0.738 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.283 0.717 41 H 0.276 0.724 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.005 0.995 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.033 -20.418 -14.464 25.992 hybrid contribution -0.323 1.421 0.365 1.503 sum 6.711 -18.997 -14.100 24.591 Atomic orbital electron populations 1.70213 1.06827 1.25717 1.55750 1.25837 0.96005 1.01687 1.01583 0.85258 0.78296 0.79581 0.77385 1.21292 1.22437 1.18939 1.19558 0.93032 0.86186 1.40152 0.91413 1.44364 1.36458 1.02431 1.50347 1.21132 0.96917 0.86154 0.94849 1.21889 0.97225 0.99237 0.96729 1.20915 0.97999 0.93974 0.96316 1.21694 0.96087 1.00325 0.96176 1.21342 0.98619 0.92393 0.88092 1.45799 1.14571 1.46071 1.29012 1.21411 0.84305 0.82592 0.83722 1.90787 1.26473 1.54599 1.74178 1.22214 0.86640 0.98356 0.92863 0.81385 1.22638 0.94084 1.02828 0.82638 1.45075 1.18620 1.60444 1.15264 1.16228 0.83098 0.78709 0.82865 1.90957 1.37410 1.64484 1.59479 1.44893 1.22056 1.60771 1.09963 1.22077 1.00387 0.96155 0.97564 1.20582 0.87619 0.97683 0.89296 0.94284 0.97488 0.92980 0.89452 0.92143 0.92620 0.88576 0.89836 0.93199 0.92878 0.73762 0.83564 0.89215 0.71709 0.72416 0.92753 0.92371 0.99498 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 11.22 21.65 0.24 -56.58 16 2 C -0.06 -3.17 4.90 84.86 0.42 -2.76 16 3 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -30.56 2.99 -699.09 -2.09 -32.66 16 10 C 0.13 5.33 6.51 86.37 0.56 5.89 16 11 C -0.11 -3.14 5.36 30.68 0.16 -2.98 16 12 C -0.07 -1.95 2.15 -10.77 -0.02 -1.98 16 13 C -0.11 -1.69 4.80 30.59 0.15 -1.54 16 14 C 0.12 2.21 5.43 86.38 0.47 2.68 16 15 N -0.70 -7.65 5.56 -463.04 -2.57 -10.23 16 16 C 0.50 7.87 6.96 87.66 0.61 8.48 16 17 O -0.58 -16.81 16.56 -3.05 -0.05 -16.86 16 18 C 0.11 0.85 4.17 44.52 0.19 1.03 16 19 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 20 C 0.10 0.46 7.69 86.65 0.67 1.13 16 21 N -0.73 -9.10 6.37 -477.33 -3.04 -12.14 16 22 C 0.69 15.09 8.92 179.57 1.60 16.69 16 23 O -0.64 -20.77 18.05 -3.98 -0.07 -20.84 16 24 N -0.72 -11.58 5.60 -460.34 -2.58 -14.16 16 25 C -0.12 -4.31 5.15 30.67 0.16 -4.16 16 26 C 0.17 8.44 5.31 86.36 0.46 8.90 16 27 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.05 2.02 7.94 -2.38 -0.02 2.00 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.20 6.54 -2.38 -0.02 1.19 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.42 0.75 8.47 -92.71 -0.79 -0.03 16 38 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.09 0.46 7.73 -2.39 -0.02 0.44 16 40 H 0.44 4.14 8.96 -92.71 -0.83 3.31 16 41 H 0.43 6.96 8.96 -92.71 -0.83 6.13 16 42 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.06 1.92 6.50 -2.39 -0.02 1.91 16 44 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.05 2.56 6.06 -2.39 -0.01 2.55 16 Total: -1.00 -88.00 361.12 -3.33 -91.33 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -1.42 Total: 7.06 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 6.22 Total: 17.96 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -10.04 Total: -125.76 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.12 Total: -37.70 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -88.00 -3.33 -91.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698724156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.481 kcal (2) G-P(sol) polarization free energy of solvation -88.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds