Wall clock time and date at job start Fri Apr 10 2020 18:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07996 * 120.00180 * 202.34362 * 3 2 1 5 5 C 1.38813 * 119.99830 * 22.34290 * 3 2 1 6 6 N 1.31618 * 120.00331 * 11.35862 * 5 3 2 7 7 Si 1.86803 * 119.99998 * 191.35059 * 5 3 2 8 8 H 1.48500 * 109.46944 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46726 * 120.00352 * 7 5 3 10 10 H 1.48494 * 109.47443 * 240.00200 * 7 5 3 11 11 C 1.46495 * 120.00003 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47573 * 270.00084 * 11 2 1 13 13 N 1.46497 * 109.47309 * 180.02562 * 12 11 2 14 14 C 1.46501 * 119.99408 * 270.00002 * 13 12 11 15 15 C 1.34769 * 120.00391 * 89.99798 * 13 12 11 16 16 O 1.21289 * 119.99775 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.00326 * 179.97438 * 15 13 12 18 18 O 1.42904 * 109.47356 * 180.02562 * 17 15 13 19 19 C 1.42897 * 113.99842 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.46784 * 180.02562 * 19 18 17 21 21 N 1.30496 * 125.65029 * 270.26891 * 20 19 18 22 22 C 1.34127 * 109.25890 * 180.14951 * 21 20 19 23 23 C 1.34674 * 108.01979 * 359.61798 * 22 21 20 24 24 N 1.35042 * 125.65150 * 90.00055 * 20 19 18 25 25 C 1.46505 * 126.39698 * 359.97438 * 24 20 19 26 26 H 1.09006 * 109.47301 * 274.20727 * 1 2 3 27 27 H 1.09002 * 109.47315 * 34.20276 * 1 2 3 28 28 H 1.08996 * 109.47362 * 154.20989 * 1 2 3 29 29 H 0.96998 * 120.00680 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.46816 * 149.99561 * 11 2 1 31 31 H 1.09007 * 109.47137 * 30.00480 * 11 2 1 32 32 H 1.08994 * 109.46684 * 59.99603 * 12 11 2 33 33 H 1.09000 * 109.46600 * 300.00084 * 12 11 2 34 34 H 1.08999 * 109.46891 * 269.99437 * 14 13 12 35 35 H 1.08997 * 109.47472 * 30.00078 * 14 13 12 36 36 H 1.09001 * 109.47051 * 150.00379 * 14 13 12 37 37 H 1.09005 * 109.47148 * 60.00021 * 17 15 13 38 38 H 1.09003 * 109.47191 * 300.00102 * 17 15 13 39 39 H 1.08992 * 109.47444 * 59.99799 * 19 18 17 40 40 H 1.09001 * 109.47347 * 299.99825 * 19 18 17 41 41 H 1.08003 * 125.99198 * 179.88318 * 22 21 20 42 42 H 1.08000 * 126.59376 * 180.24710 * 23 22 21 43 43 H 1.08995 * 109.47519 * 270.02739 * 25 24 20 44 44 H 1.09005 * 109.46972 * 30.02970 * 25 24 20 45 45 H 1.09005 * 109.47309 * 150.02597 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3555 5 6 1.5337 2.3429 0.4570 6 7 0.3842 2.2691 1.0937 7 14 2.3365 4.0048 0.1685 8 1 3.6136 3.8168 -0.5655 9 1 1.4265 4.8615 -0.6335 10 1 2.6072 4.6572 1.4747 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1855 -2.9795 1.4411 14 6 2.4534 -4.2485 1.4403 15 6 4.5332 -2.9790 1.4412 16 8 5.1392 -1.9284 1.4413 17 6 5.2872 -4.2838 1.4411 18 8 6.6921 -4.0222 1.4419 19 6 7.5025 -5.1991 1.4413 20 6 8.9576 -4.8070 1.4428 21 7 9.6915 -4.6033 0.3832 22 6 10.9350 -4.2738 0.7629 23 6 10.9709 -4.2651 2.1092 24 7 9.7168 -4.6034 2.5409 25 6 9.2796 -4.7218 3.9342 26 1 -0.3634 0.0754 1.0249 27 1 -0.3634 0.8499 -0.5777 28 1 -0.3634 -0.9253 -0.4471 29 1 -0.0461 3.0775 1.4134 30 1 3.1498 -1.1381 -0.5144 31 1 1.6084 -2.0281 -0.5148 32 1 1.5001 -1.8416 1.9554 33 1 3.0416 -0.9517 1.9558 34 1 2.2718 -4.5638 2.4677 35 1 1.5011 -4.1182 0.9264 36 1 3.0428 -5.0077 0.9261 37 1 5.0242 -4.8554 0.5510 38 1 5.0241 -4.8556 2.3310 39 1 7.2857 -5.7891 0.5509 40 1 7.2850 -5.7905 2.3307 41 1 11.7614 -4.0500 0.1046 42 1 11.8249 -4.0352 2.7290 43 1 8.9037 -3.7590 4.2802 44 1 8.4876 -5.4675 4.0043 45 1 10.1221 -5.0271 4.5547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698991869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:00 Heat of formation + Delta-G solvation = -1.052143 kcal Electronic energy + Delta-G solvation = -25458.598126 eV Core-core repulsion = 21706.269711 eV Total energy + Delta-G solvation = -3752.328415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.05316 -40.97990 -38.74116 -37.73322 -36.39542 -34.97383 -33.54597 -32.08297 -30.77712 -28.82899 -27.98480 -27.90433 -27.36007 -26.65512 -24.85413 -22.44118 -22.39279 -21.07904 -20.24558 -18.86021 -18.50915 -18.04257 -17.63518 -17.45417 -16.97897 -16.79894 -16.20034 -15.99800 -15.70550 -15.38684 -15.13492 -15.01022 -14.53451 -14.31069 -14.05282 -13.92416 -13.87176 -13.79961 -13.49703 -13.22903 -13.09216 -13.03734 -12.82853 -12.81010 -12.66313 -12.43400 -12.07499 -12.03709 -11.61839 -11.03426 -10.80968 -10.79357 -10.71595 -10.60608 -9.76763 -9.47230 -8.79471 -7.88877 -5.36168 0.86954 1.40265 1.41849 1.53317 1.60914 1.70647 1.90713 2.12207 2.47747 2.96583 3.25249 3.45627 3.68725 3.77015 3.85079 3.92373 4.10060 4.17262 4.17737 4.25567 4.36361 4.40748 4.44007 4.46294 4.54755 4.60310 4.67293 4.77448 4.80468 4.84260 4.95611 4.99329 5.16505 5.27438 5.33216 5.52561 5.60946 5.71767 5.78060 5.94658 6.18188 6.29336 6.48014 7.07858 7.12108 7.23145 7.82472 8.22338 9.14246 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002745 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.616887 B =10197.158421 C =11312.359049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.265 4.265 4 H 0.053 0.947 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.277 1.277 9 H -0.281 1.281 10 H -0.289 1.289 11 C 0.148 3.852 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.067 3.933 15 C 0.494 3.506 16 O -0.586 6.586 17 C 0.057 3.943 18 O -0.400 6.400 19 C 0.148 3.852 20 C 0.177 3.823 21 N -0.520 5.520 22 C -0.063 4.063 23 C -0.041 4.041 24 N -0.452 5.452 25 C 0.062 3.938 26 H 0.009 0.991 27 H 0.018 0.982 28 H 0.038 0.962 29 H 0.251 0.749 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.185 0.815 42 H 0.214 0.786 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -25.258 7.302 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.341 5.341 3 C -0.395 4.395 4 H 0.071 0.929 5 C -0.242 4.242 6 N -0.579 5.579 7 Si 0.793 3.207 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.215 1.215 11 C 0.021 3.979 12 C -0.012 4.012 13 N -0.344 5.344 14 C -0.074 4.074 15 C 0.283 3.717 16 O -0.465 6.465 17 C -0.021 4.021 18 O -0.318 6.318 19 C 0.071 3.929 20 C -0.085 4.085 21 N -0.241 5.241 22 C -0.211 4.211 23 C -0.175 4.175 24 N -0.134 5.134 25 C -0.079 4.079 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.202 0.798 42 H 0.230 0.770 43 H 0.092 0.908 44 H 0.125 0.875 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.014 -24.501 6.715 28.544 hybrid contribution 0.577 1.554 0.684 1.794 sum 13.591 -22.947 7.399 27.677 Atomic orbital electron populations 1.20616 0.81646 0.96497 0.97955 1.44170 1.02652 1.01262 1.86055 1.19429 0.97592 0.87041 1.35461 0.92901 1.25698 0.98451 1.01537 0.98548 1.70195 1.18822 1.27529 1.41404 0.85242 0.77937 0.80263 0.77271 1.20223 1.20702 1.21533 1.21147 0.94946 0.87355 0.94494 1.21974 0.95220 0.84370 0.99683 1.48031 1.05077 1.08598 1.72662 1.22227 0.98222 0.83144 1.03838 1.21233 0.82715 0.91736 0.76066 1.90758 1.68921 1.36075 1.50761 1.22412 0.80596 0.93110 1.06019 1.88074 1.16256 1.31565 1.95897 1.20751 0.80993 0.86604 1.04564 1.23103 0.95904 1.07448 0.82078 1.70135 1.04918 1.18733 1.30317 1.22791 0.95503 1.08318 0.94486 1.23362 0.89540 1.07792 0.96812 1.45578 1.09725 1.49311 1.08815 1.22409 1.03873 1.04407 0.77183 0.97301 0.96301 0.94359 0.94009 0.96208 0.91073 0.90118 0.94844 0.90312 0.90017 0.87890 0.86624 0.85717 0.88739 0.87550 0.79779 0.76967 0.90784 0.87538 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.82 9.01 127.77 1.15 9.97 16 2 N -0.62 -32.96 2.93 -726.94 -2.13 -35.09 16 3 C -0.26 -15.96 9.67 84.03 0.81 -15.15 16 4 H 0.05 3.30 7.84 -2.91 -0.02 3.28 16 5 C -0.05 -2.80 5.13 84.86 0.44 -2.37 16 6 N -0.93 -56.70 10.59 21.65 0.23 -56.47 16 7 Si 0.96 48.49 29.57 68.60 2.03 50.51 16 8 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 11 C 0.15 6.48 6.03 86.38 0.52 7.00 16 12 C 0.11 4.50 5.73 86.38 0.50 4.99 16 13 N -0.61 -17.78 2.87 -846.78 -2.43 -20.21 16 14 C 0.07 0.99 10.24 127.77 1.31 2.30 16 15 C 0.49 16.35 7.75 87.66 0.68 17.03 16 16 O -0.59 -28.01 16.08 15.98 0.26 -27.76 16 17 C 0.06 1.13 4.97 71.24 0.35 1.49 16 18 O -0.40 -10.83 9.86 -129.94 -1.28 -12.11 16 19 C 0.15 2.70 6.24 71.24 0.44 3.14 16 20 C 0.18 4.31 7.53 138.13 1.04 5.35 16 21 N -0.52 -15.42 11.25 -188.13 -2.12 -17.54 16 22 C -0.06 -1.48 11.87 83.52 0.99 -0.49 16 23 C -0.04 -0.72 11.58 83.09 0.96 0.24 16 24 N -0.45 -8.46 3.15 -537.59 -1.69 -10.16 16 25 C 0.06 0.58 10.97 127.77 1.40 1.98 16 26 H 0.01 0.46 7.42 -2.38 -0.02 0.45 16 27 H 0.02 1.00 7.19 -2.39 -0.02 0.99 16 28 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 31 H 0.07 2.59 7.86 -2.38 -0.02 2.57 16 32 H 0.08 2.99 8.07 -2.39 -0.02 2.97 16 33 H 0.03 1.67 7.42 -2.39 -0.02 1.65 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.19 8.07 -2.39 -0.02 1.17 16 36 H 0.10 0.81 6.44 -2.39 -0.02 0.79 16 37 H 0.12 1.50 7.40 -2.38 -0.02 1.48 16 38 H 0.13 1.28 8.11 -2.39 -0.02 1.26 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 0.95 7.07 -2.39 -0.02 0.93 16 41 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.11 0.54 7.04 -2.38 -0.02 0.53 16 45 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 Total: -1.00 -94.23 377.15 4.43 -89.80 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.97 Total: 3.51 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 10.60 Total: 35.51 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -8.14 Total: -139.46 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.02 Total: -39.87 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.51 kcal Total: -94.23 4.43 -89.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698991869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.744 kcal (2) G-P(sol) polarization free energy of solvation -94.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds