Wall clock time and date at job start Fri Apr 10 2020 18:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46591 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47121 * 299.99504 * 3 2 1 6 6 H 1.48492 * 109.47390 * 60.00109 * 3 2 1 7 7 C 1.37879 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00012 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47154 * 204.89294 * 9 7 2 11 11 C 1.46893 * 111.00056 * 293.74649 * 10 9 7 12 12 C 1.53243 * 109.33858 * 187.25281 * 11 10 9 13 13 N 1.47086 * 108.52164 * 306.16820 * 12 11 10 14 14 C 1.34773 * 120.88334 * 231.19159 * 13 12 11 15 15 O 1.21276 * 120.00316 * 185.25504 * 14 13 12 16 16 C 1.50697 * 120.00030 * 5.24824 * 14 13 12 17 17 H 1.09001 * 109.47103 * 33.93830 * 16 14 13 18 18 C 1.53002 * 109.47355 * 273.94056 * 16 14 13 19 19 C 1.53007 * 109.47062 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.46744 * 60.00065 * 19 18 16 21 21 C 1.52996 * 109.47077 * 299.99554 * 20 19 18 22 22 C 1.52995 * 109.47244 * 60.00672 * 21 20 19 23 23 H 1.09001 * 109.47335 * 59.99780 * 22 21 20 24 24 C 1.53002 * 109.47337 * 179.97438 * 22 21 20 25 25 O 1.42900 * 109.47301 * 294.99905 * 24 22 21 26 26 C 1.47078 * 118.23648 * 51.45584 * 13 12 11 27 27 C 1.46904 * 110.99725 * 58.04642 * 10 9 7 28 28 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46902 * 84.89190 * 9 7 2 30 30 H 1.09006 * 109.46979 * 324.89715 * 9 7 2 31 31 H 1.08998 * 109.49251 * 67.29488 * 11 10 9 32 32 H 1.08997 * 109.49663 * 307.20671 * 11 10 9 33 33 H 1.09000 * 109.62790 * 186.45977 * 12 11 10 34 34 H 1.08997 * 109.62955 * 65.87976 * 12 11 10 35 35 H 1.09003 * 109.47024 * 299.99437 * 18 16 14 36 36 H 1.08997 * 109.46845 * 60.00034 * 18 16 14 37 37 H 1.09001 * 109.46502 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.47275 * 300.00211 * 19 18 16 39 39 H 1.09009 * 109.46916 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47721 * 60.00145 * 20 19 18 41 41 H 1.08995 * 109.47552 * 300.00228 * 21 20 19 42 42 H 1.09007 * 109.47158 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.46875 * 54.99758 * 24 22 21 44 44 H 1.09004 * 109.47116 * 174.99658 * 24 22 21 45 45 H 0.96696 * 114.00117 * 179.97438 * 25 24 22 46 46 H 1.09000 * 109.62425 * 68.25034 * 26 13 12 47 47 H 1.08995 * 109.63230 * 188.83217 * 26 13 12 48 48 H 1.09001 * 109.49213 * 292.70623 * 27 10 9 49 49 H 1.09005 * 109.49433 * 52.75963 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.0938 -3.5513 0.5841 11 6 3.2588 -3.8253 -0.2677 12 6 4.0105 -5.0444 0.2776 13 7 4.3192 -4.8070 1.6959 14 6 5.5721 -4.9641 2.1669 15 8 5.7912 -4.8575 3.3550 16 6 6.7009 -5.2723 1.2173 17 1 6.5226 -4.7711 0.2660 18 6 6.7787 -6.7835 0.9908 19 6 7.9244 -7.0963 0.0262 20 6 9.2433 -6.6016 0.6234 21 6 9.1655 -5.0905 0.8499 22 6 8.0199 -4.7776 1.8144 23 1 8.1987 -5.2788 2.7657 24 6 7.9425 -3.2665 2.0414 25 8 9.1276 -2.8232 2.7056 26 6 3.2230 -4.3995 2.5879 27 6 2.5035 -3.2002 1.9504 28 1 -0.4850 0.8401 -0.0004 29 1 0.9905 -2.7683 -1.0231 30 1 0.3409 -2.3932 0.5911 31 1 3.9212 -2.9597 -0.2676 32 1 2.9256 -4.0289 -1.2853 33 1 4.9365 -5.1832 -0.2804 34 1 3.3858 -5.9325 0.1824 35 1 6.9571 -7.2848 1.9421 36 1 5.8392 -7.1358 0.5650 37 1 7.9800 -8.1729 -0.1348 38 1 7.7456 -6.5950 -0.9250 39 1 10.0596 -6.8249 -0.0636 40 1 9.4221 -7.1029 1.5747 41 1 8.9867 -4.5892 -0.1013 42 1 10.1053 -4.7379 1.2749 43 1 7.8529 -2.7590 1.0809 44 1 7.0730 -3.0356 2.6569 45 1 9.1475 -1.8727 2.8819 46 1 2.5240 -5.2268 2.7105 47 1 3.6280 -4.1118 3.5580 48 1 3.1763 -2.3432 1.9196 49 1 1.6224 -2.9498 2.5413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184157390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:37 Heat of formation + Delta-G solvation = -99.574079 kcal Electronic energy + Delta-G solvation = -27681.908221 eV Core-core repulsion = 24028.847918 eV Total energy + Delta-G solvation = -3653.060304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64135 -38.51331 -37.21273 -36.38816 -34.46688 -32.41854 -31.83581 -31.41548 -30.34497 -28.15167 -25.94826 -25.30078 -23.78279 -23.06983 -22.20785 -21.43851 -20.58650 -19.74264 -18.61088 -17.31190 -17.10416 -16.33719 -15.91539 -15.33213 -15.13692 -14.86475 -14.79546 -14.44358 -14.24230 -13.97865 -13.86176 -13.68690 -13.37673 -13.03310 -12.76518 -12.70416 -12.24104 -12.14629 -11.90700 -11.81547 -11.43743 -11.25048 -11.19129 -11.08544 -11.01103 -10.79730 -10.73205 -10.61755 -10.47713 -10.30875 -10.28157 -9.95042 -9.89018 -9.66337 -9.34558 -8.55161 -8.41285 -7.30067 -6.12257 -4.22220 2.75797 3.16484 3.19465 3.28340 3.30630 4.05086 4.32160 4.39304 4.53020 4.66236 4.81703 4.89066 4.98087 5.05858 5.16953 5.21152 5.23657 5.28819 5.31409 5.38777 5.44128 5.46776 5.57083 5.59046 5.70324 5.74983 5.79860 5.88976 5.91723 5.95338 5.98045 6.00980 6.05838 6.08120 6.19672 6.32394 6.37259 6.51668 6.74436 6.77938 7.13561 7.46781 7.58039 7.60643 7.78776 7.92636 8.13738 8.22917 8.33897 8.89411 9.45411 10.92194 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003974 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.874755 B = 7044.646143 C = 7804.650216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.180 3.820 10 N -0.540 5.540 11 C 0.045 3.955 12 C 0.107 3.893 13 N -0.605 5.605 14 C 0.516 3.484 15 O -0.547 6.547 16 C -0.102 4.102 17 H 0.094 0.906 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.065 4.065 23 H 0.088 0.912 24 C 0.076 3.924 25 O -0.572 6.572 26 C 0.113 3.887 27 C 0.056 3.944 28 H 0.263 0.737 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.378 0.622 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.044 0.956 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -12.208 -0.094 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.055 3.945 10 N -0.264 5.264 11 C -0.084 4.084 12 C -0.016 4.016 13 N -0.337 5.337 14 C 0.304 3.696 15 O -0.425 6.425 16 C -0.123 4.123 17 H 0.112 0.888 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.084 4.084 23 H 0.106 0.894 24 C -0.001 4.001 25 O -0.377 6.377 26 C -0.009 4.009 27 C -0.073 4.073 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.224 0.776 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.578 -13.101 0.517 19.607 hybrid contribution 0.524 2.540 -0.204 2.601 sum 15.102 -10.561 0.313 18.431 Atomic orbital electron populations 1.69931 1.05986 1.26845 1.49937 1.24957 0.94767 0.99182 0.94576 0.86612 0.80081 0.83974 0.77795 1.19950 1.20829 1.20837 1.21718 0.93238 0.92104 1.51909 0.92773 1.19873 0.93261 0.86400 0.95006 1.62546 1.17238 1.45198 1.01464 1.22267 0.93290 0.95554 0.97314 1.22041 0.99712 0.99337 0.80479 1.48225 1.08087 1.67052 1.10379 1.20557 0.83415 0.76492 0.89112 1.90667 1.83464 1.51662 1.16732 1.21352 0.93310 0.98508 0.99174 0.88793 1.21464 0.99376 0.92876 1.00658 1.21543 0.94447 1.00964 0.98555 1.21569 0.97205 0.96049 1.01038 1.21541 0.98583 0.95773 0.98867 1.20893 0.92965 0.94488 1.00062 0.89394 1.22293 0.87510 0.94684 0.95647 1.86403 1.41519 1.28746 1.81064 1.21961 0.87665 0.97764 0.93517 1.22253 0.99184 0.94609 0.91274 0.92732 0.96144 0.92872 0.94235 0.90506 0.90167 0.90928 0.91160 0.91131 0.91596 0.91636 0.91923 0.91886 0.92095 0.90956 0.94047 0.92799 0.77590 0.91436 0.89653 0.93785 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.96 55.43 0.72 -24.58 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.55 -14.51 7.52 -34.44 -0.26 -14.77 16 8 H 0.05 1.43 6.27 -52.49 -0.33 1.11 16 9 C 0.18 4.38 5.39 -4.98 -0.03 4.35 16 10 N -0.54 -10.83 4.83 -235.46 -1.14 -11.96 16 11 C 0.05 0.78 5.27 -3.70 -0.02 0.76 16 12 C 0.11 1.45 6.06 -3.60 -0.02 1.43 16 13 N -0.60 -9.21 3.00 -172.18 -0.52 -9.72 16 14 C 0.52 7.84 5.90 -10.99 -0.06 7.78 16 15 O -0.55 -10.04 14.61 5.56 0.08 -9.96 16 16 C -0.10 -1.20 1.21 -91.77 -0.11 -1.31 16 17 H 0.09 1.03 6.41 -51.93 -0.33 0.70 16 18 C -0.11 -1.03 5.05 -26.73 -0.13 -1.16 16 19 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.11 -1.10 5.10 -26.74 -0.14 -1.24 16 22 C -0.07 -0.80 1.59 -90.62 -0.14 -0.94 16 23 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 24 C 0.08 1.00 6.22 37.16 0.23 1.23 16 25 O -0.57 -7.19 13.20 -35.23 -0.46 -7.66 16 26 C 0.11 1.86 6.61 -3.36 -0.02 1.84 16 27 C 0.06 1.08 5.15 -3.46 -0.02 1.06 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 29 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 30 H 0.05 1.43 7.62 -51.93 -0.40 1.03 16 31 H 0.04 0.76 6.76 -51.93 -0.35 0.41 16 32 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 33 H 0.08 0.87 5.26 -51.93 -0.27 0.60 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.83 6.38 -51.93 -0.33 0.50 16 45 H 0.38 3.24 9.12 45.56 0.42 3.65 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.44 7.10 -51.93 -0.37 1.07 16 48 H 0.04 0.95 7.17 -51.93 -0.37 0.58 16 49 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -30.83 368.89 -9.66 -40.49 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.74 Total: 3.42 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.14 Total: -1.49 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.94 Total: -46.26 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.38 Total: -17.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.83 -9.66 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184157390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.082 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds