Wall clock time and date at job start Fri Apr 10 2020 18:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46591 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47121 * 299.99504 * 3 2 1 6 6 H 1.48492 * 109.47390 * 60.00109 * 3 2 1 7 7 C 1.37879 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00012 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47154 * 204.89294 * 9 7 2 11 11 C 1.46893 * 111.00056 * 293.74649 * 10 9 7 12 12 C 1.53243 * 109.33858 * 187.25281 * 11 10 9 13 13 N 1.47086 * 108.52164 * 306.16820 * 12 11 10 14 14 C 1.34773 * 120.88334 * 231.19159 * 13 12 11 15 15 O 1.21276 * 120.00316 * 185.25504 * 14 13 12 16 16 C 1.50697 * 120.00030 * 5.24824 * 14 13 12 17 17 H 1.09001 * 109.47103 * 33.93830 * 16 14 13 18 18 C 1.53002 * 109.47355 * 273.94056 * 16 14 13 19 19 C 1.53007 * 109.47062 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.46744 * 60.00065 * 19 18 16 21 21 C 1.52996 * 109.47077 * 299.99554 * 20 19 18 22 22 C 1.52995 * 109.47244 * 60.00672 * 21 20 19 23 23 H 1.09001 * 109.47335 * 59.99780 * 22 21 20 24 24 C 1.53002 * 109.47337 * 179.97438 * 22 21 20 25 25 O 1.42900 * 109.47301 * 294.99905 * 24 22 21 26 26 C 1.47078 * 118.23648 * 51.45584 * 13 12 11 27 27 C 1.46904 * 110.99725 * 58.04642 * 10 9 7 28 28 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46902 * 84.89190 * 9 7 2 30 30 H 1.09006 * 109.46979 * 324.89715 * 9 7 2 31 31 H 1.08998 * 109.49251 * 67.29488 * 11 10 9 32 32 H 1.08997 * 109.49663 * 307.20671 * 11 10 9 33 33 H 1.09000 * 109.62790 * 186.45977 * 12 11 10 34 34 H 1.08997 * 109.62955 * 65.87976 * 12 11 10 35 35 H 1.09003 * 109.47024 * 299.99437 * 18 16 14 36 36 H 1.08997 * 109.46845 * 60.00034 * 18 16 14 37 37 H 1.09001 * 109.46502 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.47275 * 300.00211 * 19 18 16 39 39 H 1.09009 * 109.46916 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47721 * 60.00145 * 20 19 18 41 41 H 1.08995 * 109.47552 * 300.00228 * 21 20 19 42 42 H 1.09007 * 109.47158 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.46875 * 54.99758 * 24 22 21 44 44 H 1.09004 * 109.47116 * 174.99658 * 24 22 21 45 45 H 0.96696 * 114.00117 * 179.97438 * 25 24 22 46 46 H 1.09000 * 109.62425 * 68.25034 * 26 13 12 47 47 H 1.08995 * 109.63230 * 188.83217 * 26 13 12 48 48 H 1.09001 * 109.49213 * 292.70623 * 27 10 9 49 49 H 1.09005 * 109.49433 * 52.75963 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.0938 -3.5513 0.5841 11 6 3.2588 -3.8253 -0.2677 12 6 4.0105 -5.0444 0.2776 13 7 4.3192 -4.8070 1.6959 14 6 5.5721 -4.9641 2.1669 15 8 5.7912 -4.8575 3.3550 16 6 6.7009 -5.2723 1.2173 17 1 6.5226 -4.7711 0.2660 18 6 6.7787 -6.7835 0.9908 19 6 7.9244 -7.0963 0.0262 20 6 9.2433 -6.6016 0.6234 21 6 9.1655 -5.0905 0.8499 22 6 8.0199 -4.7776 1.8144 23 1 8.1987 -5.2788 2.7657 24 6 7.9425 -3.2665 2.0414 25 8 9.1276 -2.8232 2.7056 26 6 3.2230 -4.3995 2.5879 27 6 2.5035 -3.2002 1.9504 28 1 -0.4850 0.8401 -0.0004 29 1 0.9905 -2.7683 -1.0231 30 1 0.3409 -2.3932 0.5911 31 1 3.9212 -2.9597 -0.2676 32 1 2.9256 -4.0289 -1.2853 33 1 4.9365 -5.1832 -0.2804 34 1 3.3858 -5.9325 0.1824 35 1 6.9571 -7.2848 1.9421 36 1 5.8392 -7.1358 0.5650 37 1 7.9800 -8.1729 -0.1348 38 1 7.7456 -6.5950 -0.9250 39 1 10.0596 -6.8249 -0.0636 40 1 9.4221 -7.1029 1.5747 41 1 8.9867 -4.5892 -0.1013 42 1 10.1053 -4.7379 1.2749 43 1 7.8529 -2.7590 1.0809 44 1 7.0730 -3.0356 2.6569 45 1 9.1475 -1.8727 2.8819 46 1 2.5240 -5.2268 2.7105 47 1 3.6280 -4.1118 3.5580 48 1 3.1763 -2.3432 1.9196 49 1 1.6224 -2.9498 2.5413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184157390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:37 Heat of formation + Delta-G solvation = -121.694508 kcal Electronic energy + Delta-G solvation = -27682.867435 eV Core-core repulsion = 24028.847918 eV Total energy + Delta-G solvation = -3654.019517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77126 -39.71039 -38.52841 -37.32401 -36.03732 -34.32412 -32.81854 -32.39497 -31.51281 -29.81773 -27.33926 -26.61250 -24.95618 -24.43156 -23.70262 -22.40081 -21.75023 -20.77329 -19.91236 -18.55901 -18.32357 -18.07507 -17.09444 -16.72355 -16.47954 -16.09442 -15.99091 -15.77485 -15.48392 -15.24903 -15.06246 -14.85799 -14.67498 -14.22332 -13.94385 -13.79260 -13.56436 -13.49743 -13.12519 -12.97057 -12.93624 -12.66318 -12.55583 -12.51009 -12.26225 -12.15295 -11.99510 -11.89175 -11.79974 -11.62826 -11.51310 -11.30688 -11.07593 -10.97242 -10.65495 -10.50553 -9.74464 -9.04898 -8.18291 -6.37328 1.31745 1.34491 1.44047 1.57229 1.96891 2.33416 3.04347 3.14074 3.33090 3.40785 3.69389 3.82628 3.96791 4.04239 4.09410 4.21499 4.24016 4.27833 4.33586 4.36446 4.42081 4.45025 4.51522 4.53714 4.60487 4.65190 4.73590 4.76716 4.88775 4.99678 5.01054 5.04740 5.15119 5.18461 5.20549 5.25960 5.26602 5.32427 5.36075 5.41613 5.48889 5.56889 5.70570 5.99939 6.19315 6.43044 6.50473 6.76165 6.83677 7.13218 7.33817 8.83402 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003974 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.874755 B = 7044.646143 C = 7804.650216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.191 3.809 10 N -0.536 5.536 11 C 0.044 3.956 12 C 0.116 3.884 13 N -0.609 5.609 14 C 0.514 3.486 15 O -0.584 6.584 16 C -0.095 4.095 17 H 0.110 0.890 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.063 4.063 23 H 0.062 0.938 24 C 0.078 3.922 25 O -0.583 6.583 26 C 0.124 3.876 27 C 0.064 3.936 28 H 0.265 0.735 29 H 0.012 0.988 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.393 0.607 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.015 0.985 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.628 -13.480 -1.756 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.068 0.932 9 C 0.065 3.935 10 N -0.260 5.260 11 C -0.085 4.085 12 C -0.006 4.006 13 N -0.341 5.341 14 C 0.304 3.696 15 O -0.464 6.464 16 C -0.116 4.116 17 H 0.128 0.872 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.142 4.142 22 C -0.082 4.082 23 H 0.080 0.920 24 C 0.000 4.000 25 O -0.390 6.390 26 C 0.001 3.999 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.242 0.758 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.033 0.967 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.436 -14.381 -1.159 21.870 hybrid contribution -0.043 2.947 0.363 2.970 sum 16.394 -11.434 -0.796 20.003 Atomic orbital electron populations 1.70039 1.07354 1.27740 1.51085 1.25718 0.95537 1.02516 0.94442 0.85631 0.78892 0.80009 0.77891 1.19516 1.20063 1.20676 1.21933 0.93111 0.93108 1.51193 0.93158 1.19564 0.92807 0.87141 0.94022 1.62465 1.18538 1.42979 1.01974 1.22387 0.91930 0.96540 0.97686 1.22138 1.01198 0.97834 0.79406 1.48333 1.07898 1.66879 1.10980 1.21215 0.83844 0.75376 0.89195 1.90652 1.83939 1.53185 1.18667 1.21402 0.91313 1.00364 0.98496 0.87178 1.21498 1.01024 0.90759 1.00813 1.21541 0.92928 1.02191 0.98293 1.21576 0.98368 0.94546 1.01260 1.21495 0.96945 0.97253 0.98458 1.20878 0.94266 0.93432 0.99653 0.91979 1.22261 0.86550 0.95735 0.95480 1.86374 1.41126 1.30426 1.81100 1.21722 0.88161 0.96816 0.93161 1.22151 0.98224 0.95110 0.91066 0.92575 0.97039 0.96030 0.96356 0.89429 0.86623 0.88967 0.92442 0.89796 0.89934 0.90263 0.90196 0.92636 0.90943 0.91847 0.92857 0.95870 0.75795 0.89909 0.90390 0.96672 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.45 12.96 21.45 0.28 -53.17 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.55 -29.67 7.52 25.60 0.19 -29.48 16 8 H 0.05 2.69 6.27 -2.91 -0.02 2.67 16 9 C 0.19 9.53 5.39 85.56 0.46 9.99 16 10 N -0.54 -21.50 4.83 -898.87 -4.34 -25.84 16 11 C 0.04 1.44 5.27 86.39 0.46 1.89 16 12 C 0.12 2.79 6.06 86.35 0.52 3.31 16 13 N -0.61 -17.67 3.00 -817.05 -2.45 -20.13 16 14 C 0.51 15.12 5.90 87.66 0.52 15.63 16 15 O -0.58 -21.69 14.61 -3.02 -0.04 -21.73 16 16 C -0.09 -2.02 1.21 -11.54 -0.01 -2.03 16 17 H 0.11 2.01 6.41 -2.39 -0.02 2.00 16 18 C -0.10 -1.69 5.05 30.60 0.15 -1.53 16 19 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 20 C -0.12 -1.67 5.92 30.59 0.18 -1.48 16 21 C -0.10 -1.85 5.10 30.59 0.16 -1.69 16 22 C -0.06 -1.48 1.59 -10.79 -0.02 -1.49 16 23 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 24 C 0.08 2.01 6.22 71.98 0.45 2.46 16 25 O -0.58 -14.42 13.20 -148.98 -1.97 -16.39 16 26 C 0.12 4.05 6.61 86.50 0.57 4.63 16 27 C 0.06 2.52 5.15 86.54 0.45 2.97 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 30 H 0.02 1.20 7.62 -2.38 -0.02 1.18 16 31 H 0.02 0.68 6.76 -2.39 -0.02 0.67 16 32 H 0.09 2.70 8.04 -2.39 -0.02 2.68 16 33 H 0.12 2.00 5.26 -2.39 -0.01 1.98 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.18 7.53 -2.39 -0.02 1.16 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.25 7.82 -2.38 -0.02 1.23 16 43 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.02 0.73 6.38 -2.39 -0.02 0.72 16 45 H 0.39 6.56 9.12 -74.06 -0.68 5.88 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.08 2.67 7.10 -2.39 -0.02 2.66 16 48 H 0.01 0.67 7.17 -2.39 -0.02 0.66 16 49 H 0.06 2.69 8.11 -2.38 -0.02 2.67 16 Total: -1.00 -68.50 368.89 -1.52 -70.02 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.26 Total: 18.57 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 4.72 Total: 3.45 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.52 Total: -99.14 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.01 Total: -38.12 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.50 -1.52 -70.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184157390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.674 kcal (2) G-P(sol) polarization free energy of solvation -68.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds