Wall clock time and date at job start Fri Apr 10 2020 18:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46956 * 110.99877 * 2 1 4 4 C 1.53060 * 109.36225 * 183.18984 * 3 2 1 5 5 N 1.46956 * 109.36347 * 301.59826 * 4 3 2 6 6 C 1.46901 * 110.99797 * 183.18653 * 5 4 3 7 7 C 1.46963 * 110.87544 * 59.32377 * 5 4 3 8 8 H 1.08999 * 109.48868 * 60.65099 * 7 5 4 9 9 C 1.50709 * 109.48222 * 180.68604 * 7 5 4 10 10 O 1.21277 * 120.00315 * 20.00399 * 9 7 5 11 11 N 1.34779 * 119.99395 * 199.99838 * 9 7 5 12 12 C 1.47078 * 120.88385 * 359.72316 * 11 9 7 13 13 C 1.53695 * 108.27498 * 128.75453 * 12 11 9 14 14 N 1.46900 * 109.25984 * 54.08246 * 13 12 11 15 15 C 1.46899 * 111.00159 * 172.60384 * 14 13 12 16 16 C 1.50695 * 109.47358 * 294.30420 * 15 14 13 17 17 H 1.07996 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99726 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00336 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47386 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47118 * 119.99643 * 20 18 16 23 23 H 1.48505 * 109.47097 * 239.99762 * 20 18 16 24 24 C 1.46893 * 111.26785 * 296.75995 * 14 13 12 25 25 C 1.47081 * 120.87747 * 180.02562 * 11 9 7 26 26 C 1.46953 * 111.00140 * 123.80350 * 2 1 3 27 27 H 1.09004 * 109.46750 * 296.19621 * 1 2 3 28 28 H 1.09005 * 109.47161 * 56.19611 * 1 2 3 29 29 H 1.08994 * 109.47143 * 176.20038 * 1 2 3 30 30 H 1.08997 * 109.49274 * 303.15665 * 3 2 1 31 31 H 1.08998 * 109.48598 * 63.20555 * 3 2 1 32 32 H 1.09001 * 109.48501 * 181.63192 * 4 3 2 33 33 H 1.08991 * 109.48920 * 61.57129 * 4 3 2 34 34 H 1.09002 * 109.47401 * 296.20425 * 6 5 4 35 35 H 1.09001 * 109.46874 * 176.20437 * 6 5 4 36 36 H 1.09004 * 109.46970 * 56.20571 * 6 5 4 37 37 H 1.08996 * 109.62943 * 248.52227 * 12 11 9 38 38 H 1.08998 * 109.62771 * 9.10361 * 12 11 9 39 39 H 1.09004 * 109.64886 * 294.08118 * 13 12 11 40 40 H 1.09007 * 109.42155 * 173.94939 * 13 12 11 41 41 H 1.09001 * 109.47017 * 54.30779 * 15 14 13 42 42 H 1.09001 * 109.46977 * 174.29850 * 15 14 13 43 43 H 0.97000 * 120.00369 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.49705 * 303.14133 * 24 14 13 45 45 H 1.09008 * 109.49696 * 183.06257 * 24 14 13 46 46 H 1.09001 * 109.63087 * 350.89550 * 25 11 9 47 47 H 1.08996 * 109.62863 * 111.47649 * 25 11 9 48 48 H 1.09001 * 109.49248 * 56.84465 * 26 2 1 49 49 H 1.09001 * 109.49005 * 296.77888 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0501 0.5658 1.0597 6 6 5.5191 0.5658 1.0596 7 6 3.5234 -0.8062 1.0596 8 1 3.8254 -1.3115 0.1422 9 6 4.0692 -1.5542 2.2487 10 8 4.5096 -0.9434 3.1993 11 7 4.0675 -2.9020 2.2555 12 6 3.5325 -3.6621 1.1157 13 6 4.5858 -4.6969 0.6894 14 7 4.9661 -5.5089 1.8531 15 6 5.8383 -6.6222 1.4560 16 6 5.0678 -7.5762 0.5802 17 1 4.0337 -7.3755 0.3421 18 6 5.6831 -8.7055 0.0830 19 7 6.9424 -8.9498 0.3725 20 14 4.7282 -9.8878 -1.0032 21 1 3.3404 -9.3890 -1.1775 22 1 5.3896 -9.9859 -2.3292 23 1 4.6953 -11.2288 -0.3659 24 6 5.6013 -4.6869 2.8917 25 6 4.5948 -3.6516 3.4059 26 6 1.9956 -0.7633 1.1400 27 1 -0.3633 0.4537 0.9222 28 1 -0.3634 0.5718 -0.8540 29 1 -0.3633 -1.0253 -0.0681 30 1 1.6013 1.9129 -0.8602 31 1 1.6934 1.8774 0.9172 32 1 3.9178 2.3448 -0.0513 33 1 3.8253 0.8480 -1.0106 34 1 5.8824 0.0520 0.1696 35 1 5.8825 0.0519 1.9496 36 1 5.8825 1.5935 1.0597 37 1 2.6150 -4.1700 1.4127 38 1 3.3273 -2.9840 0.2874 39 1 5.4659 -4.1851 0.2999 40 1 4.1680 -5.3422 -0.0834 41 1 6.6948 -6.2339 0.9047 42 1 6.1864 -7.1463 2.3460 43 1 7.3754 -9.7440 0.0224 44 1 6.4672 -4.1751 2.4715 45 1 5.9201 -5.3248 3.7161 46 1 5.0923 -2.9666 4.0924 47 1 3.7773 -4.1585 3.9184 48 1 1.6014 -1.7790 1.1109 49 1 1.6938 -0.2822 2.0703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185250853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:44 Heat of formation + Delta-G solvation = 4.444767 kcal Electronic energy + Delta-G solvation = -27430.490611 eV Core-core repulsion = 23814.233654 eV Total energy + Delta-G solvation = -3616.256957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68483 -38.85143 -37.42645 -35.51205 -34.43266 -32.56390 -31.73906 -30.51156 -29.48841 -28.20454 -25.90781 -25.47056 -24.40488 -23.55854 -23.02811 -21.98764 -20.84303 -19.90440 -18.65067 -17.27805 -16.46420 -16.32665 -15.99903 -15.60374 -15.11760 -14.97242 -14.74422 -14.60310 -14.45567 -14.32268 -14.07672 -13.79580 -13.59252 -13.14680 -12.99701 -12.72419 -12.42295 -12.26233 -12.01973 -11.91616 -11.82600 -11.72799 -11.34180 -11.30443 -11.10611 -11.05427 -10.93590 -10.76548 -10.62985 -10.52713 -9.91350 -9.55053 -9.29122 -8.72528 -8.53523 -8.48905 -8.41276 -7.35843 -6.08683 -4.10796 2.61821 2.94876 3.27084 3.34952 3.38762 3.60964 3.75664 4.36738 4.45781 4.57252 4.72154 4.76475 4.85765 4.92879 5.05477 5.20645 5.21989 5.25069 5.28209 5.32027 5.37065 5.40169 5.43913 5.47794 5.55437 5.59363 5.60288 5.65666 5.73590 5.75632 5.84910 5.94490 6.03033 6.25532 6.41654 6.43437 6.57743 6.61285 6.65502 6.80592 6.86180 7.19155 7.25133 7.52663 7.72041 7.98577 8.09110 8.26969 8.44653 8.96716 9.53994 11.02170 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003377 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.809098 B = 8289.299108 C = 9056.230762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.054 3.946 4 C 0.057 3.943 5 N -0.523 5.523 6 C 0.018 3.982 7 C 0.070 3.930 8 H 0.074 0.926 9 C 0.519 3.481 10 O -0.531 6.531 11 N -0.606 5.606 12 C 0.105 3.895 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 C 0.119 3.881 26 C 0.069 3.931 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.098 0.902 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 19.366 -0.878 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.072 4.072 5 N -0.248 5.248 6 C -0.130 4.130 7 C -0.042 4.042 8 H 0.091 0.909 9 C 0.306 3.694 10 O -0.407 6.407 11 N -0.340 5.340 12 C -0.018 4.018 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.068 3.932 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.088 4.088 25 C -0.004 4.004 26 C -0.060 4.060 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.116 0.884 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.669 19.360 -0.199 21.641 hybrid contribution 0.427 -0.539 -1.040 1.247 sum -9.242 18.821 -1.239 21.004 Atomic orbital electron populations 1.22358 0.86565 1.02675 1.00650 1.62136 1.08266 1.13966 1.42433 1.22218 0.94560 0.89347 1.01268 1.22215 0.94404 0.98659 0.91882 1.61883 1.08696 1.11688 1.42510 1.22524 0.86283 1.02444 1.01727 1.21647 0.95645 0.90062 0.96817 0.90877 1.20228 0.79047 0.81892 0.88279 1.90652 1.46696 1.67226 1.36118 1.48271 1.60978 1.04939 1.19790 1.22213 0.97930 0.93905 0.87745 1.22405 0.96476 0.94324 0.94621 1.62075 1.44617 1.09737 1.09573 1.19732 0.90411 0.87033 0.95976 1.21169 0.98022 1.06154 1.29439 0.91723 1.24996 0.94930 0.97960 0.96696 1.69963 1.10946 1.27363 1.45401 0.86446 0.80062 0.80865 0.80068 1.19600 1.21116 1.20993 1.22410 0.94651 0.94794 0.96942 1.21766 0.97569 0.93286 0.87745 1.22043 0.91889 0.99422 0.92659 0.95432 0.91118 0.90955 0.89998 0.93725 0.89770 0.93743 0.95825 0.89606 0.91206 0.90398 0.90010 0.95780 0.88420 0.99133 0.95004 0.92907 0.95610 0.90031 0.89421 0.90869 0.89434 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.06 0.58 0.77 16 2 N -0.54 -5.34 4.97 -242.76 -1.21 -6.55 16 3 C 0.05 0.48 5.62 -3.76 -0.02 0.46 16 4 C 0.06 0.55 5.62 -3.76 -0.02 0.53 16 5 N -0.52 -6.47 4.52 -236.11 -1.07 -7.54 16 6 C 0.02 0.22 9.14 60.07 0.55 0.77 16 7 C 0.07 0.89 1.51 -68.80 -0.10 0.79 16 8 H 0.07 0.93 6.53 -51.93 -0.34 0.59 16 9 C 0.52 7.84 6.15 -10.98 -0.07 7.77 16 10 O -0.53 -9.49 14.20 5.56 0.08 -9.41 16 11 N -0.61 -9.03 3.00 -172.16 -0.52 -9.55 16 12 C 0.10 1.48 5.80 -3.37 -0.02 1.46 16 13 C 0.05 0.91 5.47 -3.46 -0.02 0.89 16 14 N -0.53 -10.91 4.62 -235.44 -1.09 -12.00 16 15 C 0.19 4.86 4.72 -4.98 -0.02 4.83 16 16 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 17 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.04 0.73 5.62 -3.68 -0.02 0.71 16 25 C 0.12 1.83 6.60 -3.58 -0.02 1.81 16 26 C 0.07 0.77 4.71 -3.77 -0.02 0.75 16 27 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 1.25 5.84 -51.93 -0.30 0.95 16 36 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.99 5.26 -51.93 -0.27 0.71 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.86 6.67 -51.92 -0.35 1.51 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.40 7.99 -51.92 -0.41 0.99 16 46 H 0.09 1.34 7.06 -51.93 -0.37 0.98 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.09 0.92 7.19 -51.93 -0.37 0.55 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -31.04 371.89 -10.76 -41.80 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.68 Total: -1.92 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 0.40 Total: 8.98 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -3.14 Total: -61.03 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.04 -10.76 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185250853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.243 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds