Wall clock time and date at job start Fri Apr 10 2020 18:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34716 * 117.00013 * 2 1 4 4 O 1.21462 * 120.00204 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99708 * 180.02562 * 3 2 1 6 6 C 1.39589 * 120.10630 * 0.02562 * 5 3 2 7 7 C 1.37921 * 119.78779 * 180.02562 * 6 5 3 8 8 C 1.38312 * 120.13258 * 0.02562 * 7 6 5 9 9 C 1.38568 * 120.42270 * 359.95698 * 8 7 6 10 10 C 1.37817 * 120.02085 * 0.02562 * 9 8 7 11 11 C 1.50755 * 108.93234 * 179.97438 * 10 9 8 12 12 N 1.46787 * 107.69948 * 0.03086 * 11 10 9 13 13 S 1.65600 * 126.66472 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40115 * 23.51172 * 13 12 11 15 15 O 1.42106 * 106.40014 * 156.43201 * 13 12 11 16 16 C 1.76198 * 107.21730 * 269.96873 * 13 12 11 17 17 H 1.07998 * 119.99899 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99945 * 179.97438 * 16 13 12 19 19 N 1.31522 * 120.00154 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 120.00247 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46987 * 59.99897 * 20 18 16 22 22 H 1.48495 * 109.47092 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46570 * 300.00379 * 20 18 16 24 24 C 1.46643 * 106.74711 * 359.94604 * 12 11 10 25 25 H 1.09000 * 109.46945 * 299.99772 * 1 2 3 26 26 H 1.08994 * 109.47129 * 59.99819 * 1 2 3 27 27 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.10276 * 0.02562 * 6 5 3 29 29 H 1.08003 * 119.93693 * 180.02562 * 7 6 5 30 30 H 1.08004 * 119.78788 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.81787 * 119.53944 * 11 10 9 32 32 H 1.09005 * 109.81485 * 240.38084 * 11 10 9 33 33 H 0.96992 * 119.99770 * 179.97438 * 19 18 16 34 34 H 1.09002 * 109.81353 * 240.47149 * 24 12 11 35 35 H 1.09004 * 109.81132 * 119.63277 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3012 0.1082 -0.0017 7 6 5.6781 0.1880 -0.0016 8 6 6.3021 1.4224 0.0000 9 6 5.5522 2.5876 0.0007 10 6 4.1756 2.5218 0.0003 11 6 3.6189 3.9228 0.0019 12 7 4.7537 4.8539 0.0025 13 16 4.6755 6.5081 0.0036 14 8 3.4080 6.8495 0.5477 15 8 5.9047 6.9675 0.5490 16 6 4.6517 7.0302 -1.6791 17 1 4.6864 6.2980 -2.4722 18 6 4.5879 8.3734 -1.9832 19 7 4.5452 9.2651 -1.0174 20 14 4.5620 8.9270 -3.7672 21 1 3.3758 8.3483 -4.4479 22 1 4.4921 10.4092 -3.8245 23 1 5.7981 8.4635 -4.4472 24 6 5.9711 4.0364 0.0026 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8143 -0.8558 -0.0025 29 1 6.2703 -0.7152 -0.0029 30 1 7.3807 1.4783 0.0004 31 1 3.0128 4.0806 -0.8902 32 1 3.0113 4.0779 0.8935 33 1 4.5006 10.2101 -1.2314 34 1 6.5593 4.2498 0.8952 35 1 6.5607 4.2516 -0.8885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:54 Heat of formation + Delta-G solvation = -133.327089 kcal Electronic energy + Delta-G solvation = -23481.773324 eV Core-core repulsion = 19764.784306 eV Total energy + Delta-G solvation = -3716.989019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84340 -39.60694 -36.46792 -36.20230 -35.28262 -34.00983 -33.09228 -31.96490 -30.34819 -28.36106 -27.22722 -26.14050 -24.68507 -22.91147 -21.43552 -20.55619 -18.80429 -17.61950 -17.50030 -16.97506 -16.45791 -16.26666 -15.88148 -15.32268 -15.12152 -14.94925 -14.40263 -13.94871 -13.88473 -13.43807 -13.42012 -12.91513 -12.51242 -12.43358 -12.30041 -12.19790 -11.98935 -11.54509 -11.29526 -11.27901 -11.19524 -10.90478 -10.63230 -10.59347 -10.42383 -10.33861 -10.24819 -9.27412 -9.24308 -9.06614 -8.82235 -8.01624 -6.70582 -5.33545 0.59294 1.19389 2.11426 2.48533 2.56750 3.09416 3.13246 3.19157 3.61359 4.04955 4.24466 4.49025 4.60079 4.64216 4.71838 4.83673 4.96641 5.05367 5.19739 5.25163 5.37391 5.44709 5.64588 5.70736 5.89445 5.92327 5.98860 6.12083 6.13310 6.15078 6.18899 6.28545 6.48529 6.67939 6.78429 7.32263 7.35566 7.68854 7.96516 8.87665 10.23272 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.004362 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.332172 B = 6416.813039 C = 7073.946016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.503 3.497 4 O -0.491 6.491 5 C -0.112 4.112 6 C -0.064 4.064 7 C -0.135 4.135 8 C -0.063 4.063 9 C -0.107 4.107 10 C -0.028 4.028 11 C 0.168 3.832 12 N -1.020 6.020 13 S 2.731 3.269 14 O -0.993 6.993 15 O -0.995 6.995 16 C -1.019 5.019 17 H 0.103 0.897 18 C 0.133 3.867 19 N -0.846 5.846 20 Si 0.923 3.077 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.264 1.264 24 C 0.167 3.833 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.292 0.708 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 -20.391 0.064 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.347 3.653 4 O -0.378 6.378 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.153 4.153 8 C -0.081 4.081 9 C -0.108 4.108 10 C -0.030 4.030 11 C 0.042 3.958 12 N -0.854 5.854 13 S 2.833 3.167 14 O -0.984 6.984 15 O -0.986 6.986 16 C -1.153 5.153 17 H 0.121 0.879 18 C -0.085 4.085 19 N -0.475 5.475 20 Si 0.746 3.254 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.188 1.188 24 C 0.041 3.959 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.839 -19.253 0.950 19.295 hybrid contribution -0.266 0.181 -1.586 1.619 sum -1.105 -19.072 -0.636 19.114 Atomic orbital electron populations 1.23269 0.76009 1.03535 1.02885 1.86514 1.23537 1.32784 1.84725 1.21256 0.89109 0.81551 0.73353 1.90905 1.66588 1.35716 1.44608 1.18495 0.88831 0.93140 1.10859 1.21323 0.93923 0.97284 0.95678 1.21013 0.94237 0.97605 1.02400 1.20818 1.00383 0.90669 0.96272 1.20619 0.93548 0.95830 1.00814 1.20578 0.94584 0.93980 0.93845 1.19959 0.88962 0.83307 1.03529 1.59258 1.10309 1.23801 1.92071 1.00194 0.72885 0.67050 0.76586 1.93377 1.44228 1.79677 1.81071 1.93366 1.47326 1.76812 1.81068 1.30542 1.66888 1.00438 1.17438 0.87881 1.24758 0.88449 0.94882 1.00414 1.69883 1.39843 1.03890 1.33923 0.86166 0.79818 0.77744 0.81632 1.18817 1.20037 1.18813 1.19890 0.88396 0.84887 1.02727 0.91727 0.91720 0.88131 0.84222 0.84754 0.84902 0.89428 0.89369 0.89729 0.89964 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.13 9.81 -40.54 -0.40 -4.53 16 3 C 0.50 7.26 7.90 34.61 0.27 7.53 16 4 O -0.49 -8.58 14.99 -19.24 -0.29 -8.86 16 5 C -0.11 -1.55 5.88 -104.94 -0.62 -2.16 16 6 C -0.06 -0.67 9.62 -39.19 -0.38 -1.04 16 7 C -0.13 -1.24 10.03 -39.67 -0.40 -1.63 16 8 C -0.06 -0.68 10.04 -39.43 -0.40 -1.07 16 9 C -0.11 -1.56 6.21 -104.60 -0.65 -2.21 16 10 C -0.03 -0.46 6.09 -104.18 -0.63 -1.09 16 11 C 0.17 3.29 5.55 -5.01 -0.03 3.27 16 12 N -1.02 -22.00 3.72 -116.53 -0.43 -22.44 16 13 S 2.73 74.61 5.25 -107.50 -0.56 74.05 16 14 O -0.99 -29.93 17.65 -57.17 -1.01 -30.94 16 15 O -1.00 -29.14 17.65 -57.17 -1.01 -30.15 16 16 C -1.02 -28.59 9.75 30.60 0.30 -28.29 16 17 H 0.10 2.66 7.81 -52.49 -0.41 2.25 16 18 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 19 N -0.85 -25.07 13.19 55.43 0.73 -24.33 16 20 Si 0.92 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.17 2.89 7.03 -5.06 -0.04 2.85 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.14 1.13 7.61 -52.49 -0.40 0.73 16 29 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.09 1.75 8.05 -51.93 -0.42 1.33 16 32 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 33 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -36.75 323.87 -8.44 -45.20 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.74 Total: 0.14 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.59 Total: -18.80 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.30 Total: -46.77 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -2.70 Total: -74.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 74.61 SS G_CDS: -0.56 Total: 74.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.75 -8.44 -45.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.130 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds