Wall clock time and date at job start Fri Apr 10 2020 18:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39817 * 118.53170 * 2 1 4 4 C 1.38851 * 120.64135 * 0.04184 * 3 2 1 5 5 C 1.38068 * 119.94093 * 179.97438 * 4 3 2 6 6 C 1.38900 * 120.26658 * 0.02562 * 5 4 3 7 7 N 1.39916 * 120.06217 * 180.02562 * 6 5 4 8 8 S 1.65603 * 119.99743 * 45.00180 * 7 6 5 9 9 O 1.42102 * 106.40074 * 178.53978 * 8 7 6 10 10 O 1.42103 * 106.40463 * 311.45973 * 8 7 6 11 11 C 1.76197 * 107.21915 * 64.99948 * 8 7 6 12 12 H 1.07999 * 120.00240 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00335 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99589 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00185 * 180.02562 * 13 11 8 16 16 H 1.48491 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47012 * 120.00196 * 15 13 11 18 18 H 1.48497 * 109.47089 * 239.99830 * 15 13 11 19 19 C 1.39057 * 119.87722 * 0.02562 * 6 5 4 20 20 C 1.37549 * 119.67067 * 359.97438 * 19 6 5 21 21 C 1.51132 * 121.24839 * 180.27617 * 20 19 6 22 22 N 1.47266 * 116.93629 * 180.20784 * 21 20 19 23 23 C 1.33914 * 118.53437 * 180.02562 * 2 1 3 24 24 O 1.21592 * 118.46246 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46813 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47182 * 299.97943 * 1 2 3 27 27 H 1.09003 * 109.47318 * 59.97640 * 1 2 3 28 28 H 1.07995 * 120.02748 * 359.96248 * 4 3 2 29 29 H 1.07999 * 119.86578 * 180.02562 * 5 4 3 30 30 H 0.97001 * 120.00147 * 225.00314 * 7 6 5 31 31 H 0.97006 * 119.99822 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.16443 * 180.02562 * 19 6 5 33 33 H 1.09005 * 108.12630 * 58.18511 * 21 20 19 34 34 H 1.09003 * 107.78992 * 301.95565 * 21 20 19 35 35 H 0.97001 * 120.40806 * 179.80369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1328 1.2284 0.0000 4 6 1.4213 2.4207 0.0009 5 6 2.0956 3.6256 0.0014 6 6 3.4843 3.6506 0.0005 7 7 4.1632 4.8740 0.0016 8 16 3.6789 6.0888 1.0176 9 8 4.5767 7.1700 0.8068 10 8 2.2714 6.2056 0.8612 11 6 3.9516 5.5298 2.6661 12 1 4.3668 4.5484 2.8419 13 6 3.6360 6.3456 3.7319 14 7 3.1309 7.5409 3.5179 15 14 3.9257 5.7532 5.4796 16 1 4.4986 4.3835 5.4494 17 1 4.8731 6.6705 6.1625 18 1 2.6365 5.7349 6.2162 19 6 4.1987 2.4576 -0.0014 20 6 3.5231 1.2594 -0.0019 21 6 4.2635 -0.0581 0.0022 22 7 3.4457 -1.2829 -0.0035 23 6 2.1047 -1.1765 -0.0005 24 8 1.4424 -2.1962 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3634 0.5142 -0.8898 28 1 0.3415 2.4056 0.0009 29 1 1.5409 4.5522 0.0025 30 1 4.9176 5.0107 -0.5928 31 1 2.9091 8.1150 4.2677 32 1 5.2786 2.4717 -0.0017 33 1 4.9029 -0.0850 0.8845 34 1 4.9083 -0.0805 -0.8764 35 1 3.8689 -2.1557 -0.0041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:05 Heat of formation + Delta-G solvation = -108.088816 kcal Electronic energy + Delta-G solvation = -23661.865628 eV Core-core repulsion = 19978.263774 eV Total energy + Delta-G solvation = -3683.601854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29122 -40.12908 -37.62111 -37.17558 -36.57093 -36.20532 -35.22218 -34.61812 -32.31343 -29.50709 -28.55224 -28.25752 -26.70025 -23.99625 -23.04210 -21.22255 -20.61576 -19.75226 -19.22862 -18.66868 -18.17998 -17.78732 -17.33198 -16.93446 -16.53444 -16.02605 -15.66968 -15.53867 -15.42039 -14.98447 -14.91083 -14.49425 -14.04216 -13.96380 -13.94199 -13.42839 -13.33197 -13.06757 -13.03533 -12.63719 -12.56112 -12.46563 -12.29744 -12.18856 -11.67086 -11.36222 -11.26454 -11.03718 -10.69536 -10.34156 -9.72605 -8.80036 -8.52542 -7.48215 0.01546 0.30364 0.42402 1.32982 1.35093 1.50070 1.51670 1.91038 2.19703 2.47206 2.57849 2.71345 2.84280 3.43621 3.67404 3.80746 4.08426 4.15586 4.22649 4.36981 4.50493 4.54527 4.58120 4.62187 4.66524 4.85844 4.98024 5.06914 5.17230 5.28531 5.38648 5.46216 5.62924 5.81821 5.91611 5.99300 6.36280 6.57605 6.78746 7.28042 8.20024 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.004361 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.861765 B = 6418.448298 C = 6838.774657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.559 5.559 3 C 0.138 3.862 4 C -0.128 4.128 5 C -0.134 4.134 6 C 0.131 3.869 7 N -1.057 6.057 8 S 2.715 3.285 9 O -1.035 7.035 10 O -1.024 7.024 11 C -1.032 5.032 12 H 0.119 0.881 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.984 3.016 16 H -0.248 1.248 17 H -0.259 1.259 18 H -0.261 1.261 19 C -0.083 4.083 20 C -0.125 4.125 21 C 0.149 3.851 22 N -0.717 5.717 23 C 0.700 3.300 24 O -0.622 6.622 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.427 0.573 31 H 0.299 0.701 32 H 0.169 0.831 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -15.230 -5.856 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.284 5.284 3 C 0.042 3.958 4 C -0.150 4.150 5 C -0.156 4.156 6 C 0.033 3.967 7 N -0.807 5.807 8 S 2.817 3.183 9 O -1.026 7.026 10 O -1.014 7.014 11 C -1.166 5.166 12 H 0.137 0.863 13 C -0.138 4.138 14 N -0.522 5.522 15 Si 0.803 3.197 16 H -0.171 1.171 17 H -0.183 1.183 18 H -0.186 1.186 19 C -0.105 4.105 20 C -0.129 4.129 21 C 0.025 3.975 22 N -0.376 5.376 23 C 0.401 3.599 24 O -0.503 6.503 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.264 0.736 31 H 0.109 0.891 32 H 0.186 0.814 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.280 -14.654 -6.025 15.896 hybrid contribution 0.546 -0.171 0.910 1.075 sum 1.827 -14.825 -5.115 15.789 Atomic orbital electron populations 1.22026 0.75817 1.05151 1.03713 1.44311 1.08807 1.02575 1.72755 1.17795 0.91769 0.85072 1.01166 1.20719 1.01014 0.89146 1.04099 1.21816 0.93799 1.00035 0.99959 1.17506 0.90856 0.85563 1.02748 1.53237 1.45478 1.26709 1.55309 1.00258 0.72211 0.70999 0.74823 1.93337 1.67258 1.54015 1.87957 1.93273 1.34301 1.85834 1.87992 1.30809 1.57465 1.13560 1.14766 0.86282 1.25899 0.88581 0.92829 1.06523 1.69975 1.35965 1.09195 1.37079 0.85175 0.79455 0.80081 0.74993 1.17094 1.18296 1.18568 1.20610 1.01455 0.88258 1.00160 1.19352 0.91309 0.95598 1.06635 1.20280 0.91660 0.79847 1.05673 1.45050 1.03131 1.10829 1.78638 1.15719 0.83588 0.82982 0.77637 1.90922 1.65367 1.34255 1.59749 0.88993 0.90253 0.89626 0.83118 0.84210 0.73550 0.89067 0.81359 0.88062 0.87313 0.71944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.15 127.77 1.17 2.71 16 2 N -0.56 -14.08 3.07 -673.03 -2.07 -16.15 16 3 C 0.14 3.61 6.53 38.21 0.25 3.86 16 4 C -0.13 -3.64 9.26 22.38 0.21 -3.44 16 5 C -0.13 -4.67 9.17 22.39 0.21 -4.46 16 6 C 0.13 4.29 6.23 38.21 0.24 4.53 16 7 N -1.06 -38.36 5.78 -51.14 -0.30 -38.66 16 8 S 2.71 137.01 4.95 -56.49 -0.28 136.73 16 9 O -1.04 -58.67 18.02 -128.00 -2.31 -60.97 16 10 O -1.02 -56.42 14.94 -128.00 -1.91 -58.33 16 11 C -1.03 -54.08 9.68 67.73 0.66 -53.43 16 12 H 0.12 5.66 7.81 -2.91 -0.02 5.64 16 13 C 0.08 4.02 5.46 84.65 0.46 4.48 16 14 N -0.89 -51.17 13.19 21.45 0.28 -50.89 16 15 Si 0.98 39.97 29.54 68.60 2.03 42.00 16 16 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 C -0.08 -2.01 9.72 22.30 0.22 -1.80 16 20 C -0.12 -2.86 5.90 -19.69 -0.12 -2.98 16 21 C 0.15 2.29 6.98 85.62 0.60 2.89 16 22 N -0.72 -13.24 5.78 -480.97 -2.78 -16.02 16 23 C 0.70 18.33 8.36 179.40 1.50 19.83 16 24 O -0.62 -19.81 16.15 -4.01 -0.06 -19.87 16 25 H 0.09 2.02 6.66 -2.39 -0.02 2.01 16 26 H 0.08 1.48 7.89 -2.38 -0.02 1.46 16 27 H 0.09 1.45 7.89 -2.39 -0.02 1.43 16 28 H 0.15 3.56 6.66 -2.91 -0.02 3.54 16 29 H 0.14 5.66 5.58 -2.91 -0.02 5.65 16 30 H 0.43 12.46 8.96 -96.74 -0.87 11.59 16 31 H 0.30 15.42 8.31 -92.70 -0.77 14.65 16 32 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.44 5.96 8.91 -92.71 -0.83 5.14 16 Total: -1.00 -78.54 312.18 -2.53 -81.07 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.52 Total: 28.90 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 5.38 Total: -27.80 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -4.86 Total: -121.72 kcal Atomic # 8 Polarization: -134.90 SS G_CDS: -4.28 Total: -139.18 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 137.01 SS G_CDS: -0.28 Total: 136.73 kcal Total: -78.54 -2.53 -81.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.017 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds