Wall clock time and date at job start Fri Apr 10 2020 18:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39536 * 118.51134 * 2 1 4 4 C 1.38933 * 120.68483 * 359.97438 * 3 2 1 5 5 C 1.38169 * 119.99296 * 180.02562 * 4 3 2 6 6 C 1.38165 * 120.43229 * 359.79237 * 5 4 3 7 7 C 1.39154 * 119.94758 * 0.44203 * 6 5 4 8 8 N 1.39675 * 120.21278 * 179.81058 * 7 6 5 9 9 S 1.65591 * 120.00147 * 326.62693 * 8 7 6 10 10 O 1.42105 * 106.40344 * 181.21418 * 9 8 7 11 11 O 1.42103 * 106.40445 * 314.12876 * 9 8 7 12 12 C 1.76199 * 107.22091 * 67.67277 * 9 8 7 13 13 H 1.07995 * 120.00103 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99723 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00215 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99558 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46944 * 90.00429 * 16 14 12 18 18 H 1.48497 * 109.47108 * 209.99940 * 16 14 12 19 19 H 1.48498 * 109.47360 * 330.00200 * 16 14 12 20 20 C 1.38244 * 119.56573 * 359.53647 * 7 6 5 21 21 C 1.51113 * 121.31581 * 180.22691 * 20 7 6 22 22 N 1.47287 * 116.88973 * 180.10530 * 21 20 7 23 23 C 1.33910 * 118.51566 * 180.02562 * 2 1 3 24 24 O 1.21583 * 118.46971 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47293 * 90.00198 * 1 2 3 26 26 H 1.09004 * 109.46630 * 209.99964 * 1 2 3 27 27 H 1.08993 * 109.47433 * 329.99812 * 1 2 3 28 28 H 1.08001 * 120.00247 * 0.04534 * 4 3 2 29 29 H 1.08002 * 119.77839 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.02924 * 180.25854 * 6 5 4 31 31 H 0.97000 * 119.99513 * 146.34890 * 8 7 6 32 32 H 0.97007 * 119.99475 * 179.97438 * 15 14 12 33 33 H 1.09003 * 107.96872 * 301.89555 * 21 20 7 34 34 H 1.09006 * 107.96198 * 58.15550 * 21 20 7 35 35 H 0.97003 * 120.42992 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1310 1.2261 0.0000 4 6 1.4196 2.4195 -0.0005 5 6 2.0937 3.6255 -0.0011 6 6 3.4750 3.6552 0.0033 7 6 4.1954 2.4646 -0.0011 8 7 5.5920 2.4882 -0.0008 9 16 6.3998 3.7025 -0.7849 10 8 7.7855 3.4304 -0.6261 11 8 5.7763 3.8452 -2.0539 12 6 6.0816 5.1946 0.0965 13 1 5.4537 5.1795 0.9750 14 6 6.6342 6.3817 -0.3355 15 7 7.3993 6.4001 -1.4051 16 14 6.2962 7.9637 0.5985 17 1 7.3316 8.1506 1.6465 18 1 6.3321 9.1116 -0.3429 19 1 4.9565 7.8866 1.2343 20 6 3.5198 1.2585 -0.0001 21 6 4.2623 -0.0576 0.0004 22 7 3.4454 -1.2832 -0.0009 23 6 2.1043 -1.1766 -0.0005 24 8 1.4418 -2.1962 -0.0015 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 0.3397 2.4044 -0.0002 29 1 1.5372 4.5511 -0.0011 30 1 3.9953 4.6016 0.0070 31 1 6.0885 1.7954 0.4622 32 1 7.7878 7.2354 -1.7091 33 1 4.9042 -0.0819 -0.8802 34 1 4.9044 -0.0810 0.8810 35 1 3.8690 -2.1559 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:09 Heat of formation + Delta-G solvation = -106.132287 kcal Electronic energy + Delta-G solvation = -23942.283702 eV Core-core repulsion = 20258.766690 eV Total energy + Delta-G solvation = -3683.517013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.38495 -40.18702 -37.61827 -37.28893 -36.51748 -36.25786 -35.35062 -34.99494 -31.76180 -29.90961 -28.67745 -28.29115 -26.66607 -24.43804 -22.75389 -21.38562 -20.26642 -20.07268 -19.30429 -18.78015 -18.19661 -17.59974 -17.41380 -16.93642 -16.44178 -16.14826 -15.93111 -15.63125 -15.45648 -15.12875 -15.05540 -14.53570 -14.13718 -13.99872 -13.61685 -13.41346 -13.25149 -13.00519 -12.82172 -12.65595 -12.57597 -12.50060 -12.27317 -12.21323 -11.94374 -11.51973 -11.21904 -11.12484 -10.84230 -10.50706 -9.26168 -8.80767 -8.73340 -7.48964 0.07379 0.23998 0.40014 1.39595 1.40423 1.44975 1.56712 1.86934 2.21446 2.36279 2.59243 2.75663 2.77878 3.41483 3.60879 3.82343 4.01036 4.15705 4.18748 4.31290 4.35203 4.41181 4.49955 4.61248 4.72930 4.86395 4.98424 5.02799 5.12013 5.28269 5.39710 5.53938 5.59283 5.84345 5.90697 5.92478 6.19725 6.50377 6.77443 7.21096 8.20823 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.004475 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.240091 B = 6254.862206 C = 7062.970626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.558 5.558 3 C 0.179 3.821 4 C -0.173 4.173 5 C -0.044 4.044 6 C -0.218 4.218 7 C 0.218 3.782 8 N -1.056 6.056 9 S 2.709 3.291 10 O -1.033 7.033 11 O -1.024 7.024 12 C -1.030 5.030 13 H 0.133 0.867 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.239 1.239 20 C -0.191 4.191 21 C 0.149 3.851 22 N -0.715 5.715 23 C 0.699 3.301 24 O -0.616 6.616 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.145 0.855 31 H 0.426 0.574 32 H 0.300 0.700 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -6.124 6.431 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.282 5.282 3 C 0.083 3.917 4 C -0.195 4.195 5 C -0.063 4.063 6 C -0.240 4.240 7 C 0.119 3.881 8 N -0.801 5.801 9 S 2.811 3.189 10 O -1.023 7.023 11 O -1.014 7.014 12 C -1.164 5.164 13 H 0.151 0.849 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.162 1.162 20 C -0.198 4.198 21 C 0.025 3.975 22 N -0.375 5.375 23 C 0.401 3.599 24 O -0.497 6.497 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.262 0.738 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -12.217 -6.595 5.393 14.894 hybrid contribution 0.832 0.291 0.636 1.087 sum -11.385 -6.304 6.029 14.343 Atomic orbital electron populations 1.22089 0.74838 1.05299 1.03951 1.44334 1.09177 1.02316 1.72389 1.17562 0.90227 0.86049 0.97890 1.21084 1.01568 0.89174 1.07654 1.21127 0.92166 0.99135 0.93884 1.21997 0.96831 0.98046 1.07092 1.16722 0.81805 0.93001 0.96571 1.53578 1.12240 1.45058 1.69274 1.00500 0.71025 0.74017 0.73366 1.93346 1.34873 1.86572 1.87542 1.93360 1.77672 1.87032 1.43353 1.30809 1.44644 1.12481 1.28432 0.84907 1.25970 0.89515 1.04592 0.93748 1.69983 1.27388 1.32313 1.22529 0.85127 0.80930 0.74731 0.78470 1.18353 1.19117 1.16156 1.19002 0.92717 0.93710 1.14393 1.20052 0.92216 0.81166 1.04113 1.45034 1.03562 1.10205 1.78672 1.15726 0.83182 0.83349 0.77693 1.90930 1.65162 1.34188 1.59394 0.90891 0.90039 0.87100 0.81321 0.81777 0.83709 0.73760 0.88987 0.90298 0.88611 0.72060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 9.73 127.77 1.24 2.64 16 2 N -0.56 -13.94 3.06 -673.38 -2.06 -16.00 16 3 C 0.18 4.72 6.52 38.24 0.25 4.97 16 4 C -0.17 -3.80 9.17 22.42 0.21 -3.60 16 5 C -0.04 -1.11 10.02 22.24 0.22 -0.89 16 6 C -0.22 -7.41 8.97 22.47 0.20 -7.21 16 7 C 0.22 7.49 6.16 38.11 0.23 7.72 16 8 N -1.06 -39.08 5.54 -51.63 -0.29 -39.37 16 9 S 2.71 136.36 4.64 -56.49 -0.26 136.10 16 10 O -1.03 -58.24 18.02 -128.00 -2.31 -60.54 16 11 O -1.02 -58.03 17.46 -128.00 -2.23 -60.26 16 12 C -1.03 -51.45 7.60 67.74 0.51 -50.93 16 13 H 0.13 5.83 6.86 -2.91 -0.02 5.81 16 14 C 0.08 3.88 5.46 84.66 0.46 4.35 16 15 N -0.89 -50.09 13.19 21.45 0.28 -49.81 16 16 Si 0.99 37.83 29.54 68.60 2.03 39.85 16 17 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 18 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.24 -8.24 7.11 99.48 0.71 -7.54 16 20 C -0.19 -5.61 5.91 -19.57 -0.12 -5.73 16 21 C 0.15 3.64 6.21 85.61 0.53 4.17 16 22 N -0.72 -16.92 5.79 -480.95 -2.78 -19.71 16 23 C 0.70 19.80 8.36 179.40 1.50 21.30 16 24 O -0.62 -20.35 16.40 -3.98 -0.07 -20.42 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.55 7.23 -2.38 -0.02 1.53 16 27 H 0.11 1.26 6.08 -2.39 -0.01 1.24 16 28 H 0.17 2.32 6.09 -2.91 -0.02 2.30 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.15 5.56 4.48 -2.91 -0.01 5.55 16 31 H 0.43 12.80 8.09 -96.75 -0.78 12.02 16 32 H 0.30 15.17 8.31 -92.70 -0.77 14.40 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.91 7.84 -2.38 -0.02 1.89 16 35 H 0.44 8.23 8.91 -92.71 -0.83 7.40 16 Total: -1.00 -77.75 307.29 -2.86 -80.61 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.42 Total: 32.76 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.25 Total: -23.21 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -4.85 Total: -124.88 kcal Atomic # 8 Polarization: -136.62 SS G_CDS: -4.61 Total: -141.22 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 136.36 SS G_CDS: -0.26 Total: 136.10 kcal Total: -77.75 -2.86 -80.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.520 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds