Wall clock time and date at job start Fri Apr 10 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 O 1.20925 * 124.56596 * 2 1 4 4 C 1.34170 * 112.19129 * 180.27875 * 3 2 1 5 5 C 1.48203 * 126.38530 * 179.76963 * 4 3 2 6 6 O 1.21493 * 120.00105 * 179.97438 * 5 4 3 7 7 N 1.34779 * 119.99655 * 359.95684 * 5 4 3 8 8 C 1.46509 * 119.99594 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46821 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.51560 * 304.99658 * 9 8 7 11 11 C 1.53296 * 109.51079 * 184.89619 * 9 8 7 12 12 N 1.47147 * 108.38568 * 187.77359 * 11 9 8 13 13 C 1.36934 * 120.98832 * 230.55626 * 12 11 9 14 14 H 1.08007 * 119.99457 * 26.23985 * 13 12 11 15 15 C 1.38807 * 120.00958 * 206.24488 * 13 12 11 16 16 N 1.31625 * 119.99562 * 16.89893 * 15 13 12 17 17 Si 1.86797 * 120.00598 * 196.90636 * 15 13 12 18 18 H 1.48508 * 109.47092 * 59.99563 * 17 15 13 19 19 H 1.48496 * 109.47216 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47032 * 299.99740 * 17 15 13 21 21 C 1.47161 * 118.03498 * 50.53728 * 12 11 9 22 22 C 1.53291 * 108.38438 * 309.46316 * 21 12 11 23 23 O 1.42961 * 109.26302 * 52.27705 * 22 21 12 24 24 C 1.36317 * 107.22739 * 359.73386 * 4 3 2 25 25 C 1.34826 * 124.56841 * 179.83261 * 2 1 3 26 26 O 1.21980 * 127.14617 * 359.97438 * 25 2 1 27 27 H 1.09006 * 109.47161 * 270.16562 * 1 2 3 28 28 H 1.08999 * 109.47179 * 30.16731 * 1 2 3 29 29 H 1.08993 * 109.47192 * 150.16723 * 1 2 3 30 30 H 0.96995 * 120.00579 * 0.02562 * 7 5 4 31 31 H 1.08998 * 109.46652 * 299.99824 * 8 7 5 32 32 H 1.08997 * 109.47085 * 59.99743 * 8 7 5 33 33 H 1.08996 * 109.68191 * 307.49893 * 11 9 8 34 34 H 1.08998 * 109.67959 * 68.05083 * 11 9 8 35 35 H 0.96998 * 120.00057 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.67910 * 69.18993 * 21 12 11 37 37 H 1.08999 * 109.68118 * 189.70390 * 21 12 11 38 38 H 1.09001 * 109.51278 * 172.22373 * 22 21 12 39 39 H 1.08998 * 109.51654 * 292.32798 * 22 21 12 40 40 H 1.07998 * 127.99419 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7083 -0.0060 5 6 4.5760 1.6852 -0.0126 6 8 5.7264 1.2946 -0.0173 7 7 4.3132 3.0072 -0.0138 8 6 5.4149 3.9730 -0.0208 9 6 4.8474 5.3938 -0.0200 10 1 4.1609 5.5122 -0.8583 11 6 5.9938 6.4031 -0.1507 12 7 5.4458 7.7552 0.0404 13 6 5.7068 8.7552 -0.8580 14 1 5.9336 8.5121 -1.8856 15 6 5.6799 10.0811 -0.4482 16 7 5.7373 10.3750 0.8336 17 14 5.5622 11.4484 -1.7155 18 1 4.3112 11.2899 -2.4999 19 1 5.5501 12.7632 -1.0254 20 1 6.7312 11.3789 -2.6286 21 6 4.6085 8.0012 1.2253 22 6 3.5296 6.9141 1.2890 23 8 4.1497 5.6287 1.2055 24 6 3.5769 -0.6500 -0.0042 25 6 2.2300 -1.1102 0.0032 26 8 1.8473 -2.2684 0.0071 27 1 -0.3634 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5112 30 1 3.3948 3.3191 -0.0099 31 1 6.0310 3.8277 0.8665 32 1 6.0225 3.8245 -0.9134 33 1 6.7484 6.2019 0.6097 34 1 6.4406 6.3247 -1.1418 35 1 5.7181 11.3015 1.1201 36 1 5.2237 7.9610 2.1243 37 1 4.1385 8.9814 1.1457 38 1 2.9858 6.9955 2.2302 39 1 2.8372 7.0390 0.4565 40 1 4.4812 -1.2404 -0.0081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035354670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:36 Heat of formation + Delta-G solvation = -2.091848 kcal Electronic energy + Delta-G solvation = -25596.729452 eV Core-core repulsion = 21610.804195 eV Total energy + Delta-G solvation = -3985.925257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.41055 -40.04266 -38.59332 -38.43916 -35.27753 -34.65398 -34.43566 -32.54050 -31.74205 -30.85996 -28.65116 -27.53150 -25.82579 -24.01043 -23.55402 -23.19979 -21.90627 -20.74241 -19.78293 -18.97197 -18.71526 -17.59287 -16.99595 -16.44722 -16.20387 -15.65174 -15.31478 -15.17942 -15.03405 -14.52248 -14.39533 -14.10811 -13.95748 -13.90353 -13.74998 -13.35241 -13.27365 -13.21925 -12.86437 -12.59460 -11.71694 -11.20394 -10.95219 -10.91645 -10.76660 -10.51879 -10.42353 -10.35939 -10.32833 -10.06757 -9.78561 -9.37710 -9.19275 -8.85505 -8.62417 -6.85332 -5.92538 -3.36731 0.23903 1.24993 2.28043 2.46548 2.72435 3.09574 3.29617 3.35985 3.36356 4.06247 4.26495 4.35100 4.38251 4.67031 4.68207 4.77037 4.95596 4.98850 5.24353 5.30856 5.38371 5.48277 5.52418 5.63734 5.64631 5.83635 5.99814 6.06326 6.23371 6.25976 6.37205 6.63684 6.98344 7.00013 7.29908 7.42533 7.61278 7.62025 7.66724 7.73089 8.24677 9.02623 9.65247 10.21418 11.15653 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.002571 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.972973 B =10888.970052 C =11237.789866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.453 5.453 3 O -0.002 6.002 4 C 0.036 3.964 5 C 0.599 3.401 6 O -0.499 6.499 7 N -0.699 5.699 8 C 0.127 3.873 9 C 0.063 3.937 10 H 0.061 0.939 11 C 0.122 3.878 12 N -0.593 5.593 13 C -0.259 4.259 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 0.906 3.094 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.281 1.281 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.390 6.390 24 C -0.239 4.239 25 C 0.481 3.519 26 O -0.524 6.524 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.256 0.744 36 H 0.029 0.971 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -15.631 -1.267 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.216 5.216 3 O -0.014 6.014 4 C -0.022 4.022 5 C 0.380 3.620 6 O -0.374 6.374 7 N -0.349 5.349 8 C 0.004 3.996 9 C 0.003 3.997 10 H 0.079 0.921 11 C -0.005 4.005 12 N -0.317 5.317 13 C -0.388 4.388 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.736 3.264 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.207 1.207 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.310 6.310 24 C -0.264 4.264 25 C 0.279 3.721 26 O -0.405 6.405 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.246 0.754 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.514 -16.227 -1.047 18.840 hybrid contribution -0.466 1.224 -0.687 1.479 sum -9.981 -15.004 -1.734 18.103 Atomic orbital electron populations 1.22157 0.70553 1.05712 1.04592 1.46075 1.05930 0.99863 1.69752 1.84018 1.15264 1.21051 1.81036 1.23498 0.81592 0.96411 1.00679 1.16685 0.85409 0.81495 0.78384 1.90903 1.18168 1.78551 1.49769 1.45942 1.12016 1.04695 1.72258 1.21649 0.88477 0.85687 1.03793 1.22827 0.96152 0.92886 0.87822 0.92088 1.21431 0.92818 0.86212 1.00081 1.44058 1.55748 1.05482 1.26429 1.19149 1.44297 0.85433 0.89908 0.91321 1.25055 1.00640 0.97845 0.95995 1.70020 1.53079 1.18039 1.13475 0.86310 0.78259 0.81184 0.80660 1.20956 1.21515 1.20740 1.21457 0.90882 0.97127 0.89238 1.23337 0.96046 0.84104 1.00285 1.87785 1.70498 1.35334 1.37369 1.23328 0.99692 0.93342 1.10052 1.18352 0.86724 0.85529 0.81520 1.90970 1.79061 1.15860 1.54624 0.89987 0.88682 0.87636 0.75369 0.89724 0.89183 0.95075 0.91615 0.93359 0.95282 0.88703 0.89943 0.94028 0.78918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.55 11.22 59.85 0.67 1.22 16 2 N -0.45 -4.22 3.68 -69.77 -0.26 -4.48 16 3 O 0.00 -0.02 10.69 16.83 0.18 0.16 16 4 C 0.04 0.38 7.25 -36.18 -0.26 0.12 16 5 C 0.60 7.04 7.84 -12.16 -0.10 6.94 16 6 O -0.50 -7.26 16.89 5.37 0.09 -7.17 16 7 N -0.70 -7.71 5.50 -61.14 -0.34 -8.05 16 8 C 0.13 1.60 5.34 -4.04 -0.02 1.58 16 9 C 0.06 0.97 2.81 -26.58 -0.07 0.90 16 10 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.12 2.33 6.02 -3.54 -0.02 2.31 16 12 N -0.59 -14.02 3.05 -171.83 -0.52 -14.55 16 13 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 14 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 15 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 16 N -0.90 -25.12 11.14 55.49 0.62 -24.50 16 17 Si 0.91 20.71 29.59 -169.99 -5.03 15.68 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.14 3.12 5.45 -3.53 -0.02 3.10 16 22 C 0.04 0.71 6.98 37.31 0.26 0.97 16 23 O -0.39 -6.59 10.33 -35.23 -0.36 -6.96 16 24 C -0.24 -2.61 10.94 -38.70 -0.42 -3.04 16 25 C 0.48 5.79 8.02 -14.66 -0.12 5.67 16 26 O -0.52 -7.91 17.84 4.94 0.09 -7.82 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.50 8.03 -51.93 -0.42 0.09 16 30 H 0.41 3.95 8.28 -40.82 -0.34 3.61 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -32.78 344.45 -5.94 -38.72 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.26 Total: 0.86 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -0.34 Total: 12.91 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.50 Total: -51.58 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.01 Total: -21.79 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.78 -5.94 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035354670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.629 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds