Wall clock time and date at job start Fri Apr 10 2020 18:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35348 * 117.00718 * 2 1 4 4 N 1.30545 * 125.45058 * 179.97438 * 3 2 1 5 5 C 1.36329 * 108.38440 * 179.97438 * 4 3 2 6 6 C 1.47373 * 126.41246 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99625 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00105 * 0.03300 * 6 5 4 9 9 C 1.46497 * 120.00214 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47323 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.50621 * 60.00426 * 10 9 8 12 12 C 1.53293 * 109.51108 * 180.10201 * 10 9 8 13 13 N 1.47154 * 108.38377 * 172.22751 * 12 10 9 14 14 C 1.36945 * 120.97860 * 129.48516 * 13 12 10 15 15 H 1.08005 * 119.99634 * 206.22949 * 14 13 12 16 16 C 1.38806 * 120.00307 * 26.23175 * 14 13 12 17 17 N 1.31620 * 120.00019 * 16.90042 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 196.90765 * 16 14 13 19 19 H 1.48494 * 109.47386 * 59.99737 * 18 16 14 20 20 H 1.48504 * 109.46817 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46663 * 299.99536 * 18 16 14 22 22 C 1.47154 * 118.03706 * 309.46722 * 13 12 10 23 23 C 1.53295 * 108.38488 * 50.53284 * 22 13 12 24 24 O 1.42955 * 109.26462 * 307.72627 * 23 22 13 25 25 C 1.35912 * 107.17554 * 0.02562 * 5 4 3 26 26 O 1.34207 * 125.44287 * 359.69593 * 3 2 1 27 27 H 1.08992 * 109.47727 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47192 * 59.99582 * 1 2 3 29 29 H 1.09007 * 109.47120 * 300.00459 * 1 2 3 30 30 H 0.96999 * 119.99928 * 359.97438 * 8 6 5 31 31 H 1.08995 * 109.47085 * 300.00147 * 9 8 6 32 32 H 1.09008 * 109.46831 * 59.99489 * 9 8 6 33 33 H 1.09004 * 109.68594 * 291.95084 * 12 10 9 34 34 H 1.08998 * 109.68610 * 52.47132 * 12 10 9 35 35 H 0.96999 * 119.99793 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.68176 * 170.25511 * 22 13 12 37 37 H 1.08997 * 109.67795 * 290.77100 * 22 13 12 38 38 H 1.08999 * 109.51232 * 67.62227 * 23 22 13 39 39 H 1.08996 * 109.51036 * 187.77417 * 23 22 13 40 40 H 1.07997 * 126.45972 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7404 -0.0003 6 6 4.8894 3.3973 0.0004 7 8 4.9642 4.6113 0.0001 8 7 6.0129 2.6529 0.0013 9 6 7.3243 3.3059 0.0015 10 6 8.4239 2.2420 0.0032 11 1 8.3288 1.6189 -0.8861 12 6 9.7965 2.9244 0.0059 13 7 10.8277 1.8919 0.1963 14 6 11.9084 1.8122 -0.6409 15 1 12.4123 0.8676 -0.7837 16 6 12.3563 2.9453 -1.3060 17 7 11.9796 4.1391 -0.8993 18 14 13.4936 2.7758 -2.7782 19 1 12.8187 1.9821 -3.8363 20 1 13.8239 4.1240 -3.3062 21 1 14.7417 2.0869 -2.3627 22 6 10.6634 0.9480 1.3132 23 6 9.2485 0.3619 1.2468 24 8 8.2993 1.4283 1.1720 25 6 2.3605 3.3599 -0.0007 26 8 1.4229 2.3958 -0.0058 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 0.5139 0.8900 30 1 5.9533 1.6848 0.0019 31 1 7.4209 3.9273 -0.8888 32 1 7.4201 3.9284 0.8912 33 1 9.9563 3.4317 -0.9456 34 1 9.8456 3.6474 0.8201 35 1 12.2923 4.9308 -1.3643 36 1 11.3971 0.1465 1.2274 37 1 10.8005 1.4715 2.2594 38 1 9.1568 -0.2687 0.3625 39 1 9.0584 -0.2327 2.1403 40 1 2.1852 4.4255 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035460561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:48 Heat of formation + Delta-G solvation = -84.686452 kcal Electronic energy + Delta-G solvation = -25533.156830 eV Core-core repulsion = 21543.650003 eV Total energy + Delta-G solvation = -3989.506828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.55125 -40.85417 -39.98858 -39.70257 -36.48113 -36.10741 -35.81951 -33.25397 -32.53677 -31.18032 -29.13004 -28.29693 -27.55062 -25.29483 -24.85309 -23.59427 -23.01360 -21.87980 -21.35277 -20.06345 -18.90546 -18.59152 -18.41387 -17.53312 -17.42319 -17.11359 -16.87118 -16.36500 -16.25460 -16.07563 -15.81105 -15.55254 -15.36756 -15.03490 -14.63803 -14.58137 -14.33398 -13.80446 -13.18834 -13.08792 -12.99007 -12.94973 -12.64563 -12.53468 -12.19275 -12.12091 -12.08783 -11.92558 -11.87608 -11.48513 -11.27637 -10.79654 -10.54383 -10.24795 -9.76033 -8.75166 -7.90691 -5.38163 0.01051 0.86763 0.89929 1.47132 1.49789 1.56721 1.69138 2.04271 2.16079 2.48591 2.78569 3.22931 3.35055 3.50352 3.74477 4.01017 4.06667 4.13230 4.22108 4.26262 4.26650 4.41517 4.45153 4.51062 4.59270 4.64851 4.66629 4.69744 4.82311 4.96737 5.07097 5.22908 5.26362 5.52863 5.60097 5.60351 6.26270 6.26471 6.33073 6.55444 7.01631 7.06012 7.74561 8.28611 9.15257 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002756 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.802415 B =10157.996681 C =10622.536395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.256 6.256 3 C 0.383 3.617 4 N -0.486 5.486 5 C -0.077 4.077 6 C 0.600 3.400 7 O -0.566 6.566 8 N -0.695 5.695 9 C 0.142 3.858 10 C 0.074 3.926 11 H 0.061 0.939 12 C 0.161 3.839 13 N -0.615 5.615 14 C -0.268 4.268 15 H 0.073 0.927 16 C -0.050 4.050 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.103 3.897 23 C 0.056 3.944 24 O -0.391 6.391 25 C 0.034 3.966 26 O -0.214 6.214 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.416 0.584 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.004 0.996 35 H 0.252 0.748 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.052 0.948 39 H 0.120 0.880 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.306 -7.534 1.632 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.136 3.864 4 N -0.232 5.232 5 C -0.194 4.194 6 C 0.387 3.613 7 O -0.446 6.446 8 N -0.345 5.345 9 C 0.018 3.982 10 C 0.014 3.986 11 H 0.079 0.921 12 C 0.034 3.966 13 N -0.339 5.339 14 C -0.398 4.398 15 H 0.091 0.909 16 C -0.246 4.246 17 N -0.580 5.580 18 Si 0.799 3.201 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.200 1.200 22 C -0.022 4.022 23 C -0.021 4.021 24 O -0.310 6.310 25 C -0.039 4.039 26 O -0.104 6.104 27 H 0.163 0.837 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.253 0.747 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -24.863 -7.266 1.716 25.960 hybrid contribution 0.552 0.336 -0.756 0.994 sum -24.311 -6.930 0.961 25.298 Atomic orbital electron populations 1.23713 0.72547 1.07781 1.03958 1.86423 1.26208 1.14825 1.88960 1.23419 0.85412 0.80378 0.97148 1.71013 1.11318 1.16108 1.24804 1.21432 0.95646 0.88764 1.13583 1.16900 0.82634 0.85677 0.76114 1.90819 1.87264 1.13699 1.52802 1.45683 1.04819 1.11355 1.72635 1.21244 0.79879 0.94247 1.02841 1.22790 0.95102 0.92291 0.88368 0.92125 1.21085 0.85323 0.89938 1.00263 1.44345 1.23038 1.35278 1.31257 1.19514 1.07046 0.93817 1.19398 0.90906 1.25846 1.00718 0.94814 1.03183 1.70171 1.49292 0.97351 1.41223 0.85288 0.78873 0.76378 0.79590 1.20225 1.22018 1.20007 1.21812 0.97017 0.93451 0.89943 1.23086 0.88105 0.88334 1.02609 1.87798 1.55838 1.44280 1.43126 1.25582 0.83778 0.94814 0.99711 1.84431 1.38977 1.15470 1.71537 0.83668 0.90426 0.90421 0.74739 0.89711 0.91415 0.91235 0.97813 0.93854 0.90884 0.96497 0.93002 0.86218 0.71504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.73 113.37 1.22 1.29 16 2 O -0.26 -4.26 10.55 -64.17 -0.68 -4.94 16 3 C 0.38 8.02 8.98 130.43 1.17 9.19 16 4 N -0.49 -12.92 11.10 -419.40 -4.65 -17.57 16 5 C -0.08 -1.98 6.99 40.31 0.28 -1.70 16 6 C 0.60 18.86 7.81 86.65 0.68 19.53 16 7 O -0.57 -20.24 16.89 -4.11 -0.07 -20.31 16 8 N -0.70 -22.21 5.45 -466.42 -2.54 -24.75 16 9 C 0.14 5.07 5.37 86.38 0.46 5.53 16 10 C 0.07 2.91 2.86 30.69 0.09 2.99 16 11 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 12 C 0.16 7.89 4.73 86.35 0.41 8.30 16 13 N -0.61 -31.32 3.05 -697.53 -2.13 -33.45 16 14 C -0.27 -14.71 9.65 84.03 0.81 -13.90 16 15 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 16 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 17 N -0.93 -55.37 11.14 21.65 0.24 -55.13 16 18 Si 0.97 44.61 29.59 68.60 2.03 46.64 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.10 4.29 6.74 86.35 0.58 4.87 16 23 C 0.06 1.92 6.98 72.08 0.50 2.42 16 24 O -0.39 -14.75 10.14 -148.98 -1.51 -16.26 16 25 C 0.03 0.61 11.93 67.28 0.80 1.41 16 26 O -0.21 -3.61 10.20 18.84 0.19 -3.42 16 27 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.42 12.72 8.08 -92.71 -0.75 11.98 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.07 3.77 6.14 -2.39 -0.01 3.76 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.27 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -72.96 344.99 -1.36 -74.33 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.33 Total: 17.28 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 7.43 Total: 37.58 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -9.08 Total: -130.89 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -2.06 Total: -44.93 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.96 -1.36 -74.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035460561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.361 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds