Wall clock time and date at job start Fri Apr 10 2020 18:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 120.00119 * 2 1 4 4 O 1.21501 * 120.00464 * 185.38351 * 3 2 1 5 5 C 1.48203 * 120.00199 * 5.38234 * 3 2 1 6 6 C 1.36313 * 126.38695 * 186.38619 * 5 3 2 7 7 C 1.42349 * 104.01038 * 179.97438 * 6 5 3 8 8 O 1.21971 * 127.15057 * 180.02562 * 7 6 5 9 9 N 1.34834 * 105.70117 * 0.02562 * 7 6 5 10 10 C 1.46499 * 124.56699 * 180.02562 * 9 7 6 11 11 O 1.20929 * 110.86404 * 359.74062 * 9 7 6 12 12 C 1.46502 * 119.99972 * 179.97438 * 2 1 3 13 13 H 1.09001 * 110.64276 * 178.31347 * 12 2 1 14 14 C 1.54321 * 110.71867 * 301.45396 * 12 2 1 15 15 N 1.47019 * 107.27100 * 140.73429 * 14 12 2 16 16 C 1.36942 * 125.65278 * 181.02482 * 15 14 12 17 17 H 1.08004 * 119.99435 * 14.13106 * 16 15 14 18 18 C 1.38802 * 120.00337 * 194.13818 * 16 15 14 19 19 N 1.31616 * 120.00245 * 28.03985 * 18 16 15 20 20 Si 1.86807 * 120.00140 * 208.04252 * 18 16 15 21 21 H 1.48498 * 109.47496 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47140 * 59.99157 * 20 18 16 23 23 H 1.48511 * 109.46599 * 299.99744 * 20 18 16 24 24 C 1.47425 * 108.70588 * 1.28655 * 15 14 12 25 25 C 1.55131 * 104.71701 * 335.55383 * 24 15 14 26 26 H 1.08997 * 111.19227 * 279.18704 * 25 24 15 27 27 O 1.42905 * 110.93866 * 155.28881 * 25 24 15 28 28 H 1.08994 * 109.46959 * 274.76990 * 1 2 3 29 29 H 1.09001 * 109.46810 * 34.76778 * 1 2 3 30 30 H 1.09000 * 109.46867 * 154.76844 * 1 2 3 31 31 H 1.07995 * 127.99801 * 359.97438 * 6 5 3 32 32 H 1.08998 * 109.47129 * 89.99751 * 10 9 7 33 33 H 1.09001 * 109.46745 * 209.99903 * 10 9 7 34 34 H 1.08996 * 109.46706 * 329.99477 * 10 9 7 35 35 H 1.09002 * 109.88797 * 21.31859 * 14 12 2 36 36 H 1.09004 * 110.01510 * 260.22250 * 14 12 2 37 37 H 0.97003 * 120.00137 * 6.20336 * 19 18 16 38 38 H 1.08994 * 110.36777 * 94.48271 * 24 15 14 39 39 H 1.09002 * 110.36790 * 216.80572 * 24 15 14 40 40 H 0.96704 * 113.99746 * 67.95467 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3499 1.1695 -0.0987 5 6 1.4028 2.4478 0.1204 6 6 1.9337 3.6988 0.0134 7 6 0.8194 4.5636 0.2050 8 8 0.8228 5.7832 0.1924 9 7 -0.2407 3.7543 0.4033 10 6 -1.6087 4.2202 0.6438 11 8 0.0889 2.5920 0.3503 12 6 2.1975 -1.2687 0.0006 13 1 3.2726 -1.0918 -0.0295 14 6 1.8182 -2.1176 1.2323 15 7 1.7366 -3.5171 0.7895 16 6 1.4058 -4.5861 1.5789 17 1 0.9599 -4.4234 2.5491 18 6 1.6437 -5.8786 1.1324 19 7 2.6241 -6.1126 0.2861 20 14 0.5722 -7.2863 1.7326 21 1 1.0294 -8.5557 1.1124 22 1 -0.8403 -7.0298 1.3531 23 1 0.6763 -7.3923 3.2103 24 6 2.0759 -3.5801 -0.6438 25 6 1.7549 -2.1631 -1.1875 26 1 0.6893 -2.0495 -1.3863 27 8 2.5246 -1.8785 -2.3574 28 1 -0.3633 0.0855 1.0241 29 1 -0.3633 0.8442 -0.5860 30 1 -0.3633 -0.9296 -0.4381 31 1 2.9619 3.9709 -0.1735 32 1 -2.1292 4.3256 -0.3081 33 1 -2.1344 3.4972 1.2674 34 1 -1.5800 5.1846 1.1509 35 1 0.8525 -1.7951 1.6217 36 1 2.5813 -2.0169 2.0041 37 1 3.2362 -5.4000 0.0439 38 1 3.1338 -3.8081 -0.7735 39 1 1.4616 -4.3271 -1.1466 40 1 2.2838 -2.4133 -3.1263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047363556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:17 Heat of formation + Delta-G solvation = 11.508343 kcal Electronic energy + Delta-G solvation = -26571.276031 eV Core-core repulsion = 22585.940523 eV Total energy + Delta-G solvation = -3985.335508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.36150 -40.31557 -38.39511 -38.26570 -35.63047 -35.23610 -34.54681 -32.48794 -32.16473 -29.15540 -28.16655 -27.68924 -26.93168 -24.66686 -23.88939 -23.33123 -20.81030 -20.65279 -19.59485 -18.70728 -18.44520 -17.79754 -17.65936 -17.07217 -16.25980 -15.68064 -15.46289 -15.14878 -14.69823 -14.26458 -14.08073 -13.95674 -13.92315 -13.78122 -13.66831 -13.38330 -13.25691 -13.24226 -12.61097 -12.40733 -12.27199 -11.86694 -11.51441 -10.86306 -10.72909 -10.66714 -10.36656 -10.32635 -10.25467 -10.10672 -9.89481 -9.53269 -8.86765 -8.72640 -8.56265 -7.15125 -6.23128 -3.29117 0.30631 1.30313 2.33321 2.44414 2.77812 3.04672 3.42706 3.45317 3.64066 4.07160 4.27326 4.39402 4.49708 4.69761 4.72149 4.77575 4.88259 4.95880 5.00679 5.12811 5.17377 5.32202 5.36433 5.45543 5.51629 5.54752 5.70451 5.72308 5.76923 6.11671 6.36007 6.49724 6.64010 6.79011 7.01773 7.31138 7.56880 7.63313 7.73781 7.85410 8.32333 8.84635 9.65295 10.14643 11.09273 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.003265 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.391728 B = 8572.748441 C = 9132.485263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.599 3.401 4 O -0.492 6.492 5 C 0.041 3.959 6 C -0.240 4.240 7 C 0.482 3.518 8 O -0.525 6.525 9 N -0.457 5.457 10 C 0.107 3.893 11 O 0.000 6.000 12 C 0.136 3.864 13 H 0.119 0.881 14 C 0.131 3.869 15 N -0.597 5.597 16 C -0.342 4.342 17 H 0.070 0.930 18 C -0.022 4.022 19 N -0.914 5.914 20 Si 1.065 2.935 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.120 3.880 25 C 0.074 3.926 26 H 0.068 0.932 27 O -0.559 6.559 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.193 0.807 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.270 0.730 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 15.502 -2.289 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.315 5.315 3 C 0.382 3.618 4 O -0.366 6.366 5 C -0.017 4.017 6 C -0.265 4.265 7 C 0.280 3.720 8 O -0.406 6.406 9 N -0.221 5.221 10 C -0.030 4.030 11 O -0.011 6.011 12 C 0.033 3.967 13 H 0.137 0.863 14 C 0.004 3.996 15 N -0.326 5.326 16 C -0.469 4.469 17 H 0.088 0.912 18 C -0.224 4.224 19 N -0.555 5.555 20 Si 0.894 3.106 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.007 4.007 25 C 0.013 3.987 26 H 0.086 0.914 27 O -0.364 6.364 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.210 0.790 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.282 14.772 -1.974 17.557 hybrid contribution -0.006 1.207 -0.074 1.209 sum -9.288 15.978 -2.048 18.595 Atomic orbital electron populations 1.22015 0.78617 1.03801 1.02905 1.47716 1.07641 1.05392 1.70762 1.16796 0.86036 0.80636 0.78283 1.90897 1.11762 1.84832 1.49148 1.23459 0.80972 0.97424 0.99888 1.23326 1.02403 0.90861 1.09910 1.18332 0.83317 0.88827 0.81505 1.90961 1.83754 1.10353 1.55546 1.46126 1.11675 0.96303 1.67959 1.22131 0.75684 1.01571 1.03581 1.84238 1.24869 1.12588 1.79430 1.22312 0.98332 0.80712 0.95335 0.86318 1.21580 0.98953 0.85789 0.93230 1.44378 1.82221 1.01607 1.04399 1.19759 1.39364 0.85373 1.02448 0.91187 1.25788 0.99103 0.97836 0.99709 1.70800 1.12714 1.35431 1.36550 0.83523 0.75523 0.76073 0.75442 1.20997 1.22029 1.21899 1.22227 0.99394 0.92910 0.86163 1.23535 0.94020 0.96151 0.84998 0.91417 1.86487 1.63251 1.65227 1.21419 0.91427 0.90721 0.89299 0.78973 0.90090 0.88752 0.87721 0.94546 0.94598 0.91831 0.94196 0.92174 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.15 59.85 0.49 1.22 16 2 N -0.58 -8.20 2.89 -172.82 -0.50 -8.70 16 3 C 0.60 8.72 7.68 -12.17 -0.09 8.62 16 4 O -0.49 -8.69 16.28 5.37 0.09 -8.60 16 5 C 0.04 0.49 6.80 -36.18 -0.25 0.25 16 6 C -0.24 -2.95 10.94 -38.70 -0.42 -3.37 16 7 C 0.48 6.20 8.02 -14.65 -0.12 6.08 16 8 O -0.53 -8.28 17.84 4.94 0.09 -8.19 16 9 N -0.46 -4.53 3.68 -69.77 -0.26 -4.78 16 10 C 0.11 0.58 11.22 59.85 0.67 1.25 16 11 O 0.00 0.00 7.87 16.83 0.13 0.13 16 12 C 0.14 2.33 3.08 -66.10 -0.20 2.13 16 13 H 0.12 2.28 7.00 -51.93 -0.36 1.92 16 14 C 0.13 2.55 6.88 -3.07 -0.02 2.53 16 15 N -0.60 -14.13 3.32 -169.94 -0.56 -14.70 16 16 C -0.34 -9.13 10.03 -15.06 -0.15 -9.28 16 17 H 0.07 1.85 7.97 -52.48 -0.42 1.43 16 18 C -0.02 -0.61 5.08 -17.44 -0.09 -0.70 16 19 N -0.91 -26.50 12.84 55.49 0.71 -25.78 16 20 Si 1.07 24.06 30.00 -169.99 -5.10 18.96 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.12 2.58 4.98 -2.41 -0.01 2.57 16 25 C 0.07 1.25 3.96 -24.46 -0.10 1.15 16 26 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 27 O -0.56 -8.95 13.47 -35.23 -0.47 -9.43 16 28 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 29 H 0.07 0.66 5.96 -51.93 -0.31 0.35 16 30 H 0.09 0.96 6.14 -51.93 -0.32 0.64 16 31 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 35 H 0.04 0.66 7.05 -51.93 -0.37 0.30 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.27 7.87 5.95 -40.82 -0.24 7.62 16 38 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 39 H 0.06 1.39 7.78 -51.93 -0.40 0.98 16 40 H 0.38 4.41 9.12 45.56 0.42 4.83 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -34.92 334.87 -5.13 -40.05 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.00 Total: 3.55 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.29 Total: 12.46 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.61 Total: -53.96 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.17 Total: -26.09 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.10 Total: 18.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.92 -5.13 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047363556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.554 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds