Wall clock time and date at job start Fri Apr 10 2020 18:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20916 * 124.57038 * 2 1 4 4 C 1.34166 * 112.19752 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38827 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99808 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99613 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99343 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.46681 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.67666 * 300.77472 * 9 8 7 11 11 C 1.53290 * 109.67810 * 180.25088 * 9 8 7 12 12 O 1.42965 * 109.22312 * 187.97475 * 11 9 8 13 13 C 1.42963 * 114.16610 * 62.57919 * 12 11 9 14 14 C 1.53292 * 109.22532 * 297.42646 * 13 12 11 15 15 N 1.47158 * 109.67915 * 61.28994 * 9 8 7 16 16 C 1.36934 * 120.97983 * 350.23382 * 15 9 8 17 17 H 1.07994 * 120.00899 * 31.06197 * 16 15 9 18 18 C 1.38819 * 119.99490 * 211.05653 * 16 15 9 19 19 N 1.31617 * 120.00205 * 10.77854 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 190.77272 * 18 16 15 21 21 H 1.48500 * 109.46826 * 90.00417 * 20 18 16 22 22 H 1.48501 * 109.46961 * 209.99930 * 20 18 16 23 23 H 1.48499 * 109.47048 * 330.00203 * 20 18 16 24 24 C 1.36317 * 107.22435 * 0.22109 * 4 3 2 25 25 C 1.34833 * 124.56577 * 179.97438 * 2 1 3 26 26 O 1.21979 * 127.14995 * 0.05192 * 25 2 1 27 27 H 1.09000 * 109.47364 * 0.02794 * 1 2 3 28 28 H 1.09004 * 109.47114 * 120.02666 * 1 2 3 29 29 H 1.08996 * 109.47351 * 240.02648 * 1 2 3 30 30 H 0.96998 * 120.00583 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47415 * 59.99916 * 8 7 5 32 32 H 1.09001 * 109.47231 * 299.99144 * 8 7 5 33 33 H 1.08997 * 109.51751 * 307.90256 * 11 9 8 34 34 H 1.09002 * 109.51506 * 68.00569 * 11 9 8 35 35 H 1.09009 * 109.50713 * 57.34912 * 13 12 11 36 36 H 1.08994 * 109.51405 * 177.49559 * 13 12 11 37 37 H 1.09000 * 109.68459 * 172.02205 * 14 13 12 38 38 H 1.09003 * 109.68091 * 292.57435 * 14 13 12 39 39 H 0.96998 * 120.00306 * 180.02562 * 19 18 16 40 40 H 1.07999 * 127.99343 * 179.73704 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7082 0.0006 5 6 4.5760 1.6851 0.0002 6 8 5.7264 1.2944 0.0003 7 7 4.3133 3.0070 -0.0003 8 6 5.4150 3.9728 -0.0012 9 6 4.8475 5.3937 -0.0022 10 1 4.2236 5.5391 -0.8841 11 6 5.9965 6.4084 -0.0095 12 8 5.4652 7.7225 0.1769 13 6 4.8042 7.9143 1.4299 14 6 3.5942 6.9766 1.5110 15 7 4.0458 5.6080 1.2130 16 6 3.7298 4.5650 2.0420 17 1 4.4069 3.7295 2.1411 18 6 2.5390 4.5815 2.7553 19 7 1.6203 5.4833 2.4814 20 14 2.2406 3.3239 4.1039 21 1 2.7346 3.8591 5.3980 22 1 0.7857 3.0444 4.2069 23 1 2.9640 2.0684 3.7788 24 6 3.5769 -0.6501 -0.0041 25 6 2.2300 -1.1103 0.0005 26 8 1.8473 -2.2685 0.0001 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3634 -0.5134 0.8902 30 1 3.3948 3.3190 -0.0007 31 1 6.0265 3.8255 -0.8914 32 1 6.0273 3.8264 0.8886 33 1 6.6907 6.1783 0.7987 34 1 6.5201 6.3587 -0.9643 35 1 5.4941 7.6897 2.2435 36 1 4.4695 8.9484 1.5105 37 1 3.1685 7.0125 2.5138 38 1 2.8437 7.2819 0.7819 39 1 0.7884 5.4951 2.9801 40 1 4.4812 -1.2405 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050889360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:34 Heat of formation + Delta-G solvation = 2.529448 kcal Electronic energy + Delta-G solvation = -27086.947769 eV Core-core repulsion = 23101.222906 eV Total energy + Delta-G solvation = -3985.724863 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -44.98221 -39.63265 -38.46439 -38.04020 -35.59149 -34.24096 -33.83007 -32.12030 -31.76640 -30.58574 -28.21689 -27.30138 -25.81988 -23.62758 -23.53763 -23.05089 -21.73442 -20.15117 -19.75760 -18.57958 -18.28097 -17.31259 -16.56784 -16.19305 -15.98351 -15.39040 -15.00810 -14.85320 -14.79507 -14.56398 -14.06643 -13.97275 -13.67921 -13.66017 -13.52473 -13.34208 -13.10496 -12.92762 -12.77877 -12.09871 -11.70303 -11.16646 -11.01076 -10.91550 -10.54575 -10.39600 -10.35361 -10.18786 -10.01127 -9.90234 -9.76027 -9.12540 -8.88294 -8.59647 -8.45018 -6.87072 -6.04006 -3.54561 0.68973 1.68260 2.69167 2.95838 3.18483 3.21469 3.26884 3.29922 3.59564 4.21973 4.42754 4.70492 4.80643 5.00188 5.04214 5.10029 5.13832 5.19788 5.33605 5.39606 5.59357 5.71169 5.84547 5.86135 5.90795 5.93347 6.02887 6.09018 6.22820 6.40643 6.53945 6.67329 6.96238 7.38901 7.54112 7.56011 7.75467 7.78727 8.04721 8.15101 8.23977 8.91736 9.52315 10.11354 11.01873 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.005177 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.968799 B = 5407.303980 C = 6493.417644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.452 5.452 3 O 0.006 5.994 4 C 0.049 3.951 5 C 0.592 3.408 6 O -0.518 6.518 7 N -0.671 5.671 8 C 0.132 3.868 9 C 0.124 3.876 10 H 0.044 0.956 11 C 0.056 3.944 12 O -0.391 6.391 13 C 0.034 3.966 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.262 4.262 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.255 4.255 25 C 0.480 3.520 26 O -0.532 6.532 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.423 0.577 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.257 0.743 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -1.941 -5.453 5.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.214 5.214 3 O -0.005 6.005 4 C -0.010 4.010 5 C 0.373 3.627 6 O -0.396 6.396 7 N -0.321 5.321 8 C 0.008 3.992 9 C 0.017 3.983 10 H 0.062 0.938 11 C -0.023 4.023 12 O -0.310 6.310 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.318 5.318 16 C -0.391 4.391 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.538 5.538 20 Si 0.722 3.278 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.280 4.280 25 C 0.279 3.721 26 O -0.414 6.414 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.262 0.738 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.896 -2.420 -5.509 6.083 hybrid contribution -0.786 -0.644 1.167 1.547 sum 0.110 -3.063 -4.342 5.315 Atomic orbital electron populations 1.22122 0.70821 1.05517 1.04401 1.46068 1.05956 0.99962 1.69408 1.84120 1.15312 1.20719 1.80354 1.23617 0.81707 0.96417 0.99234 1.16701 0.85200 0.81844 0.78973 1.90833 1.18177 1.78860 1.51733 1.46038 1.12769 1.03896 1.69418 1.21379 0.88596 0.87370 1.01830 1.21452 0.93384 0.91512 0.91968 0.93821 1.22849 0.94941 0.83842 1.00648 1.87814 1.74938 1.29907 1.38335 1.23360 0.96054 1.00025 0.84908 1.21428 0.91807 0.82550 1.02365 1.44085 1.61622 1.04185 1.21860 1.19195 1.00287 1.00124 1.19513 0.91002 1.25120 0.95181 0.98076 1.00176 1.69970 1.06803 1.35974 1.41067 0.86440 0.77308 0.81407 0.82635 1.21063 1.21480 1.20293 1.23202 0.99478 0.93353 1.11971 1.18331 0.86731 0.85454 0.81598 1.90930 1.79221 1.15911 1.55375 0.87996 0.89298 0.89362 0.73808 0.91315 0.90561 0.93378 0.89764 0.94049 0.90171 0.88919 0.95169 0.93315 0.79214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.13 11.18 59.85 0.67 1.80 16 2 N -0.45 -6.69 3.68 -69.77 -0.26 -6.94 16 3 O 0.01 0.10 10.69 16.84 0.18 0.28 16 4 C 0.05 0.79 7.25 -36.18 -0.26 0.53 16 5 C 0.59 10.10 7.84 -12.17 -0.10 10.00 16 6 O -0.52 -9.72 16.89 5.37 0.09 -9.63 16 7 N -0.67 -11.34 3.80 -61.13 -0.23 -11.57 16 8 C 0.13 2.13 4.44 -4.03 -0.02 2.11 16 9 C 0.12 2.17 3.20 -67.42 -0.22 1.96 16 10 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 11 C 0.06 0.90 6.29 37.31 0.23 1.13 16 12 O -0.39 -7.06 10.74 -35.23 -0.38 -7.44 16 13 C 0.03 0.62 6.99 37.31 0.26 0.88 16 14 C 0.14 3.05 5.38 -3.53 -0.02 3.03 16 15 N -0.59 -12.56 3.03 -164.29 -0.50 -13.06 16 16 C -0.26 -6.04 7.11 -15.06 -0.11 -6.14 16 17 H 0.07 1.68 5.81 -52.49 -0.30 1.37 16 18 C 0.01 0.36 5.06 -17.43 -0.09 0.27 16 19 N -0.90 -22.74 11.13 55.49 0.62 -22.13 16 20 Si 0.89 20.00 29.57 -169.99 -5.03 14.97 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.26 -4.01 10.94 -38.70 -0.42 -4.44 16 25 C 0.48 8.05 8.02 -14.66 -0.12 7.93 16 26 O -0.53 -10.20 17.92 4.94 0.09 -10.11 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.42 7.55 7.19 -40.82 -0.29 7.26 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 2.19 6.32 -51.93 -0.33 1.86 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -29.60 337.10 -5.62 -35.22 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.10 Total: 6.27 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -0.18 Total: 19.07 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.37 Total: -53.70 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.02 Total: -26.91 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.60 -5.62 -35.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050889360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.750 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds